--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/genome_results.txt	Sat May 16 09:40:45 2020 -0400
@@ -0,0 +1,135 @@
+BamQC report
+-----------------------------------
+
+>>>>>>> Input
+
+     bam file = x_bam
+     outfile = results/genome_results.txt
+
+
+>>>>>>> Reference
+
+     number of bases = 1,817,261 bp
+     number of contigs = 1
+
+
+>>>>>>> Globals
+
+     number of windows = 400
+
+     number of reads = 1,248,774
+     number of mapped reads = 1,242,183 (99.47%)
+     number of supplementary alignments = 3,386 (0.27%)
+     number of secondary alignments = 0
+
+     number of mapped paired reads (first in pair) = 623,192
+     number of mapped paired reads (second in pair) = 618,991
+     number of mapped paired reads (both in pair) = 1,237,764
+     number of mapped paired reads (singletons) = 4,419
+     number of overlapping read pairs = 463,596
+
+     number of mapped bases = 366,875,582 bp
+     number of sequenced bases = 366,823,893 bp
+     number of aligned bases = 0 bp
+     number of duplicated reads (estimated) = 673,527
+     duplication rate = 47.01%
+
+
+>>>>>>> Insert size
+
+     mean insert size = 1,097.678
+     std insert size = 27,365.2401
+     median insert size = 524
+
+
+>>>>>>> Mapping quality
+
+     mean mapping quality = 58.4552
+
+
+>>>>>>> ACTG content
+
+     number of A's = 109,576,306 bp (29.87%)
+     number of C's = 73,524,910 bp (20.04%)
+     number of T's = 111,308,231 bp (30.34%)
+     number of G's = 72,414,446 bp (19.74%)
+     number of N's = 0 bp (0%)
+
+     GC percentage = 39.78%
+
+
+>>>>>>> Mismatches and indels
+
+    general error rate = 0.0098
+    number of mismatches = 3,560,959
+    number of insertions = 7,229
+    mapped reads with insertion percentage = 0.56%
+    number of deletions = 14,669
+    mapped reads with deletion percentage = 1.15%
+    homopolymer indels = 46.92%
+
+
+>>>>>>> Coverage
+
+     mean coverageData = 201.8838X
+     std coverageData = 112.2733X
+     paired-end adapted mean coverage = 177.4988X
+
+     There is a 99.81% of reference with a coverageData >= 1X
+     There is a 99.77% of reference with a coverageData >= 2X
+     There is a 99.74% of reference with a coverageData >= 3X
+     There is a 99.7% of reference with a coverageData >= 4X
+     There is a 99.66% of reference with a coverageData >= 5X
+     There is a 99.6% of reference with a coverageData >= 6X
+     There is a 99.53% of reference with a coverageData >= 7X
+     There is a 99.41% of reference with a coverageData >= 8X
+     There is a 99.3% of reference with a coverageData >= 9X
+     There is a 99.21% of reference with a coverageData >= 10X
+     There is a 99.11% of reference with a coverageData >= 11X
+     There is a 98.99% of reference with a coverageData >= 12X
+     There is a 98.87% of reference with a coverageData >= 13X
+     There is a 98.76% of reference with a coverageData >= 14X
+     There is a 98.63% of reference with a coverageData >= 15X
+     There is a 98.5% of reference with a coverageData >= 16X
+     There is a 98.35% of reference with a coverageData >= 17X
+     There is a 98.16% of reference with a coverageData >= 18X
+     There is a 97.97% of reference with a coverageData >= 19X
+     There is a 97.79% of reference with a coverageData >= 20X
+     There is a 97.59% of reference with a coverageData >= 21X
+     There is a 97.37% of reference with a coverageData >= 22X
+     There is a 97.16% of reference with a coverageData >= 23X
+     There is a 96.95% of reference with a coverageData >= 24X
+     There is a 96.71% of reference with a coverageData >= 25X
+     There is a 96.48% of reference with a coverageData >= 26X
+     There is a 96.24% of reference with a coverageData >= 27X
+     There is a 95.99% of reference with a coverageData >= 28X
+     There is a 95.73% of reference with a coverageData >= 29X
+     There is a 95.49% of reference with a coverageData >= 30X
+     There is a 95.23% of reference with a coverageData >= 31X
+     There is a 94.99% of reference with a coverageData >= 32X
+     There is a 94.75% of reference with a coverageData >= 33X
+     There is a 94.51% of reference with a coverageData >= 34X
+     There is a 94.27% of reference with a coverageData >= 35X
+     There is a 94.01% of reference with a coverageData >= 36X
+     There is a 93.8% of reference with a coverageData >= 37X
+     There is a 93.55% of reference with a coverageData >= 38X
+     There is a 93.31% of reference with a coverageData >= 39X
+     There is a 93.04% of reference with a coverageData >= 40X
+     There is a 92.77% of reference with a coverageData >= 41X
+     There is a 92.52% of reference with a coverageData >= 42X
+     There is a 92.27% of reference with a coverageData >= 43X
+     There is a 91.99% of reference with a coverageData >= 44X
+     There is a 91.72% of reference with a coverageData >= 45X
+     There is a 91.44% of reference with a coverageData >= 46X
+     There is a 91.17% of reference with a coverageData >= 47X
+     There is a 90.9% of reference with a coverageData >= 48X
+     There is a 90.64% of reference with a coverageData >= 49X
+     There is a 90.4% of reference with a coverageData >= 50X
+     There is a 90.15% of reference with a coverageData >= 51X
+
+
+>>>>>>> Coverage per contig
+
+	NZ_CP031250.1	1817261	366875582	201.88381415768015	112.27329056357358
+
+