--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/sambamba_plugin.xml	Tue Feb 11 10:13:08 2025 +0000
@@ -0,0 +1,39 @@
+<macros>
+    <token name="@SAMBAMBA_COMMAND@"><![CDATA[
+        #set $pattern = "finding positions of the duplicate reads in the file"
+        @LN_FILES@
+    ]]></token>
+    <xml name="sambamba_form">
+        <param name="input" type="data" format="txt" multiple="true" label="Output of Sambamba markdup" help="It should contain 'finding positions of the duplicate reads in the file'"/>
+    </xml>
+    <xml name="sambamba_test">
+        <test expect_num_outputs="3">
+            <repeat name="results">
+                <conditional name="software_cond">
+                    <param name="software" value="sambamba"/>
+                    <param name="input" value="sambamba.txt"/>
+                </conditional>
+            </repeat>
+            <param name="title" value="Title of the report"/>
+            <param name="comment" value="Commment for the report"/>
+            <param name="flat" value="true"/>
+            <param name="export" value="true"/>
+            <output name="html_report">
+                <assert_contents>
+                    <has_text text="Title of the report"/>
+                    <has_text text="Commment for the report"/>
+                    <has_text text="Sambamba Markdup"/>
+                </assert_contents>
+            </output>
+            <output name="stats">
+                <assert_contents>
+                    <has_text text="Sample"/>
+                    <has_text text="sambamba_markdup-duplicate_rate"/>
+                    <has_n_lines n="2"/>
+                    <has_n_columns n="2"/>
+                </assert_contents>
+            </output>
+            <output_collection name="plots" type="list" count="0"/>
+        </test>
+    </xml>
+</macros>