Mercurial > repos > iuc > multiqc
diff multiqc.xml @ 9:df99138d2776 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 31d721c19f5681dfe542dd23185c06c8f29f1945
| author | iuc |
|---|---|
| date | Wed, 25 Apr 2018 07:59:52 -0400 |
| parents | e0f4a651c6b9 |
| children | ce0f144f4835 |
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--- a/multiqc.xml Fri Apr 20 01:06:25 2018 -0400 +++ b/multiqc.xml Wed Apr 25 07:59:52 2018 -0400 @@ -8,6 +8,10 @@ ]]></token> <token name="@CHECK_LN_FILE@"> <![CDATA[ +#if $file_path in $file_paths + #set $file_path += '_' + str($file_paths.count($file_path)) +#end if +#set $file_paths += [$file_path] grep -q "$pattern" $file || die "Module '${repeat.software_cond.software}: '$pattern' not found in the file '$identifier'" && ln -s '$file' '$file_path' && ]]></token> @@ -23,6 +27,7 @@ ]]></token> <token name="@LN_FILES@"> <![CDATA[ +#set file_paths = [] #for $file in $repeat.software_cond.input @ESCAPE_IDENTIFIER@ #set file_path = os.path.join($software_dir, str($identifier)) @@ -31,6 +36,7 @@ ]]></token> <token name="@LN_2_FILES@"> <![CDATA[ +#set file_paths = [] @CREATE_REPEAT_DIR_1@ #for $file in $repeat2.input #set identifier = re.sub('[^\s\w\-]', '_', str($file.element_identifier)) @@ -40,6 +46,7 @@ ]]></token> <token name="@LN_3_FILES@"> <![CDATA[ +#set file_paths = [] #for $file in $repeat2.type.input #set identifier = re.sub('[^\s\w\-]', '_', str($file.element_identifier)) #set file_path = os.path.join($repeat_dir, str($identifier)) @@ -868,7 +875,7 @@ <repeat name="results"> <conditional name="software_cond"> <param name="software" value="hicexplorer" /> - <param name="input" value="hicexplorer1.log,hicexplorer2.log" /> + <param name="input" value="hicexplorer1.log,hicexplorer1.log,hicexplorer2.log" /> </conditional> </repeat> <repeat name="results"> @@ -910,7 +917,7 @@ <has_text text="star_alignment_plot" /> <has_text text="tophat_alignment" /> <has_text text="hicexplorer" /> - + <has_text text="hicexplorer1_log_1" /> </assert_contents> </output> <output_collection name="stats" type="list">