Mercurial > repos > iuc > multiqc
diff test-data/post_aligner_soft_stats.tabular @ 8:e0f4a651c6b9 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 13875b17a3a5259b9705529a3597bea12828cb20
| author | iuc |
|---|---|
| date | Fri, 20 Apr 2018 01:06:25 -0400 |
| parents | 01237d721a9f |
| children | 1c2db0054039 |
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--- a/test-data/post_aligner_soft_stats.tabular Sun Jan 14 09:55:46 2018 -0500 +++ b/test-data/post_aligner_soft_stats.tabular Fri Apr 20 01:06:25 2018 -0400 @@ -1,21 +1,22 @@ -Sample QUAST_N50-2-1 QUAST_Total_length-2-1 featureCounts_Assigned-1 featureCounts_percent_assigned-1-1 Picard_PCT_PF_READS_ALIGNED-1 Prokka_contigs-1 Prokka_bases-1 Prokka_CDS-1 Prokka_organism-1 Bcftools Stats_number_of_SNPs-1 Bcftools Stats_tstv-1 Bcftools Stats_number_of_records-1 Bcftools Stats_number_of_MNPs-1 Bcftools Stats_number_of_indels-1 Bamtools_duplicates_pct-1-1 Bamtools_mapped_reads_pct-1-1 Picard_PERCENT_DUPLICATION-1 Picard_summed_mean-1 Picard_summed_median-1 HTSeq Count_percent_assigned-2 HTSeq Count_assigned-1 Picard_PCT_RIBOSOMAL_BASES-1 Picard_PCT_MRNA_BASES-1 Samtools Flagstat_mapped_passed-1-1 Samtools Stats_reads_mapped_percent-1 Samtools Stats_raw_total_sequences-1-1 Samtools Stats_reads_mapped-1 Samtools Stats_error_rate-1 Samtools Stats_non_primary_alignments-1 GATK VariantEval_known_titv-1 GATK VariantEval_novel_titv-1 Samblaster_pct_dups-1 -14892_1#15 115136.0 18435361.0 -70: TopHat on data 1, data 4, and data 3: accepted_hits 321797 70.82267755353567 -75: TopHat on data 1, data 6, and data 5: accepted_hits 445012 69.58585803304067 -80: TopHat on data 1, data 8, and data 7: accepted_hits 394981 71.76957768385707 -85: TopHat on data 1, data 10, and data 9: accepted_hits 437485 72.02454351337069 -90: TopHat on data 1, data 12, and data 11: accepted_hits 388170 71.33130826437625 -95: TopHat on data 1, data 14, and data 13: accepted_hits 453929 70.72517103678439 -D11_H4K16ac_Rep1_R1_fastq_gz 0.983085 -Sample1 30 1629978 1548 Helicobacter pylori -Sample2 52 162997532523 1548 Escherichia coli -Test1 4474244.0 1.97 5522770.0 72330.0 902934.0 -bamtools 0.0 93.125 -dataset_114 0.005582 -dataset_197 271.809759 176 -htseq 0.0 0 -picard_CollectRnaSeqMetrics_bam 79.62310000000001 -samtools_flagstat 20689039 -samtools_stats 100.0 641821.0 641821.0 0.004248509 12111.0 -varianteval_1_gatk_varianteval 0.0 2.2 -virtual-normal 1.28 +Sample QUAST_mqc-generalstats-N50 QUAST_mqc-generalstats-Total_length featureCounts_mqc-generalstats-percent_assigned featureCounts_mqc-generalstats-Assigned Picard_mqc-generalstats-PCT_PF_READS_ALIGNED Prokka_mqc-generalstats-contigs Prokka_mqc-generalstats-organism Prokka_mqc-generalstats-bases Prokka_mqc-generalstats-CDS Bcftools Stats_mqc-generalstats-tstv Bcftools Stats_mqc-generalstats-number_of_MNPs Bcftools Stats_mqc-generalstats-number_of_indels Bcftools Stats_mqc-generalstats-number_of_SNPs Bcftools Stats_mqc-generalstats-number_of_records Bamtools_mqc-generalstats-duplicates_pct Bamtools_mqc-generalstats-mapped_reads_pct Picard_mqc-generalstats-PERCENT_DUPLICATION Picard_mqc-generalstats-summed_median Picard_mqc-generalstats-summed_mean GATK VariantEval_mqc-generalstats-known_titv GATK VariantEval_mqc-generalstats-novel_titv HTSeq Count_mqc-generalstats-percent_assigned HTSeq Count_mqc-generalstats-assigned Picard_mqc-generalstats-PCT_MRNA_BASES Picard_mqc-generalstats-PCT_RIBOSOMAL_BASES Samtools Flagstat_mqc-generalstats-mapped_passed Samtools Stats_mqc-generalstats-raw_total_sequences Samtools Stats_mqc-generalstats-non_primary_alignments Samtools Stats_mqc-generalstats-reads_mapped Samtools Stats_mqc-generalstats-error_rate Samtools Stats_mqc-generalstats-reads_mapped_percent SnpEff_mqc-generalstats-Ts_Tv_ratio SnpEff_mqc-generalstats-Number_of_variants_before_filter SnpEff_mqc-generalstats-Change_rate Samblaster_mqc-generalstats-pct_dups +14892_1#15 115136.0 18435361.0 +70: TopHat on data 1, data 4, and data 3: accepted_hits 70.82267755353567 321797 +75: TopHat on data 1, data 6, and data 5: accepted_hits 69.58585803304067 445012 +80: TopHat on data 1, data 8, and data 7: accepted_hits 71.76957768385707 394981 +85: TopHat on data 1, data 10, and data 9: accepted_hits 72.02454351337069 437485 +90: TopHat on data 1, data 12, and data 11: accepted_hits 71.33130826437625 388170 +95: TopHat on data 1, data 14, and data 13: accepted_hits 70.72517103678439 453929 +D11_H4K16ac_Rep1_R1_fastq_gz 0.983085 +Sample1 30 Helicobacter pylori 1629978 1548 +Sample2 52 Escherichia coli 162997532523 1548 +Test1 1.97 72330.0 902934.0 4474244.0 5522770.0 +bamtools 0.0 93.125 +dataset_114 0.005582 +dataset_197 176 271.809759 +gatk_varianteval 0.0 2.2 +htseq 0.0 0 +picard_CollectRnaSeqMetrics_bam 79.62310000000001 +samtools_flagstat 20689039 +samtools_stats 641821.0 12111.0 641821.0 0.004248509 100.0 +snpeff 0.0 972155.0 3190.0 +virtual-normal 1.28