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diff test-data/macs_1.txt @ 11:f0ec41881020 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit c9c5c4dd15aed950ed9b43a294ce6c41f5732a23
author iuc
date Mon, 06 Aug 2018 10:42:11 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/macs_1.txt	Mon Aug 06 10:42:11 2018 -0400
@@ -0,0 +1,100 @@
+# This file is generated by MACS version 2.1.1.20160309
+# Command line: callpeak --name treat1 -t /private/var/folders/zn/m_qvr9zd7tq0wdtsbq255f8xypj_zg/T/tmpiNVEd5/files/000/dataset_1.dat -c /private/var/folders/zn/m_qvr9zd7tq0wdtsbq255f8xypj_zg/T/tmpiNVEd5/files/000/dataset_2.dat --format BED --gsize 2700000000 --keep-dup 1 --qvalue 0.05 --mfold 5 50 --bw 300
+# ARGUMENTS LIST:
+# name = treat1
+# format = BED
+# ChIP-seq file = ['/private/var/folders/zn/m_qvr9zd7tq0wdtsbq255f8xypj_zg/T/tmpiNVEd5/files/000/dataset_1.dat']
+# control file = ['/private/var/folders/zn/m_qvr9zd7tq0wdtsbq255f8xypj_zg/T/tmpiNVEd5/files/000/dataset_2.dat']
+# effective genome size = 2.70e+09
+# band width = 300
+# model fold = [5, 50]
+# qvalue cutoff = 5.00e-02
+# Larger dataset will be scaled towards smaller dataset.
+# Range for calculating regional lambda is: 1000 bps and 10000 bps
+# Broad region calling is off
+# Paired-End mode is off
+
+# tag size is determined as 100 bps
+# total tags in treatment: 199977
+# tags after filtering in treatment: 199583
+# maximum duplicate tags at the same position in treatment = 1
+# Redundant rate in treatment: 0.00
+# total tags in control: 199978
+# tags after filtering in control: 199867
+# maximum duplicate tags at the same position in control = 1
+# Redundant rate in control: 0.00
+# d = 254
+# alternative fragment length(s) may be 254 bps
+chr	start	end	length	abs_summit	pileup	-log10(pvalue)	fold_enrichment	-log10(qvalue)	name
+chr1	840082	840400	319	840240	4.00	10.71801	4.90785	7.08620	MACS2_peak_1
+chr1	919420	919785	366	919550	5.00	12.44148	5.85158	8.70936	MACS2_peak_2
+chr1	937221	937483	263	937375	4.00	10.06728	4.87632	6.61759	MACS2_peak_3
+chr1	954743	954996	254	954814	3.00	8.29236	3.92628	4.97243	MACS2_peak_4
+chr1	994763	995016	254	994906	3.00	8.29236	3.92628	4.97243	MACS2_peak_5
+chr1	1057395	1057648	254	1057509	3.00	8.29236	3.92628	4.97243	MACS2_peak_6
+chr1	1240580	1241004	425	1240777	3.00	7.77216	3.90105	4.60940	MACS2_peak_7
+chr1	1307393	1307735	343	1307601	5.00	12.44148	5.85158	8.70936	MACS2_peak_8
+chr1	1440351	1440633	283	1440462	4.00	10.71801	4.90785	7.08620	MACS2_peak_9
+chr1	1555433	1555725	293	1555571	4.00	10.71801	4.90785	7.08620	MACS2_peak_10
+chr1	1590668	1590946	279	1590840	4.00	10.06728	4.87632	6.61759	MACS2_peak_11
+chr1	1837669	1838104	436	1837886	6.00	14.88256	6.82684	10.84922	MACS2_peak_12
+chr1	1840366	1840828	463	1840547	5.00	13.22276	5.88942	9.29290	MACS2_peak_13
+chr1	1976400	1976653	254	1976469	3.00	8.29236	3.92628	4.97243	MACS2_peak_14
+chr1	2071302	2071627	326	2071423	4.00	10.71801	4.90785	7.08620	MACS2_peak_15
+chr1	2105717	2106140	424	2105919	4.00	7.70001	4.64644	4.60940	MACS2_peak_16
+chr1	2126522	2126861	340	2126648	4.00	10.06728	4.87632	6.61759	MACS2_peak_17
+chr1	2246521	2246954	434	2246712	5.00	9.59761	5.57573	6.23289	MACS2_peak_18
+chr1	2313158	2313560	403	2313353	5.00	13.22276	5.88942	9.29290	MACS2_peak_19
+chr1	2345828	2346242	415	2346028	7.00	17.38158	7.80211	13.02598	MACS2_peak_20
+chr1	2510055	2510308	254	2510213	3.00	8.29236	3.92628	4.97243	MACS2_peak_21
+chr1	3341408	3341661	254	3341461	3.00	7.77216	3.90105	4.60940	MACS2_peak_22
+chr1	3369639	3369892	254	3369863	3.00	8.29236	3.92628	4.97243	MACS2_peak_23
+chr1	3400441	3400769	329	3400610	4.00	10.71801	4.90785	7.08620	MACS2_peak_24
+chr1	3407841	3408094	254	3407975	3.00	8.29236	3.92628	4.97243	MACS2_peak_25
+chr1	3481748	3482245	498	3481863	4.00	10.71801	4.90785	7.08620	MACS2_peak_26
+chr1	3535562	3535821	260	3535663	3.00	8.29236	3.92628	4.97243	MACS2_peak_27
+chr1	3537757	3538010	254	3537960	3.00	8.29236	3.92628	4.97243	MACS2_peak_28
+chr1	3593610	3593863	254	3593838	3.00	7.77216	3.90105	4.60940	MACS2_peak_29
+chr1	3640884	3641366	483	3641134	12.00	30.54970	12.67843	24.90331	MACS2_peak_30
+chr1	3702144	3702397	254	3702260	3.00	7.77216	3.90105	4.60940	MACS2_peak_31
+chr1	3773699	3774058	360	3773876	7.00	18.42402	7.85256	13.89198	MACS2_peak_32
+chr1	3827306	3827722	417	3827525	5.00	13.22276	5.88942	9.29290	MACS2_peak_33
+chr1	4712784	4713037	254	4712904	3.00	8.29236	3.92628	4.97243	MACS2_peak_34
+chr1	4886187	4886440	254	4886326	3.00	7.77216	3.90105	4.60940	MACS2_peak_35
+chr1	5569919	5570198	280	5570056	4.00	10.71801	4.90785	7.08620	MACS2_peak_36
+chr1	5574777	5575080	304	5574838	3.00	8.29236	3.92628	4.97243	MACS2_peak_37
+chr1	5805838	5806091	254	5805965	2.00	5.96348	2.94471	2.92914	MACS2_peak_38
+chr1	5976146	5976399	254	5976235	3.00	8.29236	3.92628	4.97243	MACS2_peak_39
+chr1	6094646	6094899	254	6094678	2.00	5.96348	2.94471	2.92914	MACS2_peak_40
+chr1	6112957	6113210	254	6113135	3.00	6.57684	3.80689	3.50364	MACS2_peak_41
+chr1	6265253	6265640	388	6265437	6.00	11.56197	6.50502	7.91704	MACS2_peak_42
+chr1	6305229	6305482	254	6305299	3.00	8.29236	3.92628	4.97243	MACS2_peak_43
+chr1	6306874	6307127	254	6307013	3.00	8.29236	3.92628	4.97243	MACS2_peak_44
+chr1	6403481	6403843	363	6403679	6.00	15.79441	6.87099	11.56042	MACS2_peak_45
+chr1	6464657	6465096	440	6464869	6.00	11.56197	6.50502	7.91704	MACS2_peak_46
+chr1	6483604	6483857	254	6483739	3.00	8.29236	3.92628	4.97243	MACS2_peak_47
+chr1	6498110	6498494	385	6498258	6.00	14.88256	6.82684	10.84922	MACS2_peak_48
+chr1	6535513	6535838	326	6535591	5.00	13.22276	5.88942	9.29290	MACS2_peak_49
+chr1	6614468	6614882	415	6614708	4.00	10.06728	4.87632	6.61759	MACS2_peak_50
+chr1	6706586	6706931	346	6706743	5.00	13.22276	5.88942	9.29290	MACS2_peak_51
+chr1	6761833	6762203	371	6762039	7.00	14.98313	7.61377	10.92185	MACS2_peak_52
+chr1	6780092	6780471	380	6780329	6.00	15.79441	6.87099	11.56042	MACS2_peak_53
+chr1	6787475	6787900	426	6787704	7.00	18.42402	7.85256	13.89198	MACS2_peak_54
+chr1	6949953	6950377	425	6950153	5.00	10.64473	5.71033	7.08620	MACS2_peak_55
+chr1	7102753	7103077	325	7102915	4.00	10.71801	4.90785	7.08620	MACS2_peak_56
+chr1	7278317	7278718	402	7278483	6.00	15.79441	6.87099	11.56042	MACS2_peak_57
+chr1	7868456	7868722	267	7868577	4.00	10.71801	4.90785	7.08620	MACS2_peak_58
+chr1	7962797	7963068	272	7962862	3.00	7.77216	3.90105	4.60940	MACS2_peak_59
+chr1	8042368	8042722	355	8042491	6.00	14.88256	6.82684	10.84922	MACS2_peak_60
+chr1	8075039	8075466	428	8075252	6.00	12.78498	6.66205	9.02328	MACS2_peak_61
+chr1	8076577	8076851	275	8076739	4.00	8.57130	4.75861	5.22097	MACS2_peak_62
+chr1	8091217	8091506	290	8091352	4.00	10.71801	4.90785	7.08620	MACS2_peak_63
+chr1	8374359	8374715	357	8374570	6.00	15.79441	6.87099	11.56042	MACS2_peak_64
+chr1	8408996	8409352	357	8409218	4.00	10.71801	4.90785	7.08620	MACS2_peak_65
+chr1	8731417	8731750	334	8731570	4.00	10.06728	4.87632	6.61759	MACS2_peak_66
+chr1	8786590	8786948	359	8786756	7.00	12.59445	7.26312	8.86075	MACS2_peak_67
+chr1	8908916	8909169	254	8909002	2.00	5.57376	2.92579	2.70690	MACS2_peak_68
+chr1	8978204	8978524	321	8978356	5.00	13.22276	5.88942	9.29290	MACS2_peak_69
+chr1	9048092	9048380	289	9048260	4.00	8.57130	4.75861	5.22097	MACS2_peak_70
+chr1	9065105	9065592	488	9065349	5.00	13.22276	5.88942	9.29290	MACS2_peak_71
+chr1	9069997	9070429	433	9070211	4.00	10.71801	4.90785	7.08620	MACS2_peak_72