Mercurial > repos > iuc > multiqc
diff deeptools_plugin.xml @ 24:f7e2f1eb3a16 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit dffbb5d421a5a5773bcb7f05933b12c45461bb58
| author | iuc |
|---|---|
| date | Mon, 02 Sep 2024 14:22:54 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/deeptools_plugin.xml Mon Sep 02 14:22:54 2024 +0000 @@ -0,0 +1,39 @@ +<macros> + <token name="@DEEPTOOLS_COMMAND@"><![CDATA[ + #for $j, $repeat2 in enumerate( $repeat.software_cond.output ) + #if str($repeat2.type) == "bamPEFragmentSize" + #set $pattern = "Frag." + @LN_2_FILES@ + #elif str($repeat2.type) == "estimateReadFiltering" + #set $pattern = "Internally-determined Duplicate" + @LN_2_FILES@ + #elif str($repeat2.type) == "plotCoverageStdout" + #set $pattern = "sample" + @LN_2_FILES@ + #elif str($repeat2.type) == "plotCoverageOutRawCounts" + #set $pattern = "#plotCoverage --outRawCounts" + @LN_2_FILES@ + #elif str($repeat2.type) == "plotEnrichment" + #set $pattern = "featureReadCount" + @LN_2_FILES@ + #elif str($repeat2.type) == "plotFingerprintOutRawCounts" + #set $pattern = "#plotFingerprint --outRawCounts" + @LN_2_FILES@ + #end if + #end for + ]]></token> + <xml name="deeptools_form"> + <repeat name="output" title="deepTools output" min="1"> + <param name="type" type="select" label="deepTool used to generate the output?"> + <option value="bamPEFragmentSize">bamPEFragmentSize</option> + <option value="estimateReadFiltering">estimateReadFiltering</option> + <option value="plotCoverageStdout">plotCoverageStdout</option> + <option value="plotCoverageOutRawCounts">plotCoverageOutRawCounts</option> + <option value="plotEnrichment">plotEnrichment</option> + <option value="plotFingerprintOutRawCounts">plotFingerprintOutRawCounts</option> + <option value="plotFingerprintOutQualityMetrics">plotFingerprintOutQualityMetrics</option> + </param> + <param name="input" type="data" format="txt" label="Bismark output" multiple="true"/> + </repeat> + </xml> +</macros>