Mercurial > repos > iuc > multiqc
view test-data/pre_alignment_soft_log.txt @ 13:161f4383df15 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 8ebda44b3ef25ef8ba030460134560547082289b
| author | iuc |
|---|---|
| date | Sun, 20 Jan 2019 05:20:30 -0500 |
| parents | e0f4a651c6b9 |
| children |
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[2018-04-05 12:06:46,534] multiqc [DEBUG ] No MultiQC config found: /Users/bebatut/miniconda3/envs/multiqc/lib/python3.5/site-packages/multiqc_config.yaml [2018-04-05 12:06:46,534] multiqc [DEBUG ] No MultiQC config found: /Users/bebatut/.multiqc_config.yaml [2018-04-05 12:06:46,534] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2018-04-05 12:06:46,534] multiqc [DEBUG ] Command used: /Users/bebatut/miniconda3/envs/multiqc/bin/multiqc multiqc_WDir [2018-04-05 12:06:47,547] multiqc [DEBUG ] Latest MultiQC version is v1.5 [2018-04-05 12:06:47,547] multiqc [INFO ] This is MultiQC v1.5 [2018-04-05 12:06:47,548] multiqc [DEBUG ] Command : /Users/bebatut/miniconda3/envs/multiqc/bin/multiqc multiqc_WDir [2018-04-05 12:06:47,548] multiqc [DEBUG ] Working dir : /Users/bebatut/Documents/galaxy/tools/tools-iuc/tools/multiqc [2018-04-05 12:06:47,548] multiqc [INFO ] Template : default [2018-04-05 12:06:47,548] multiqc [INFO ] Searching 'multiqc_WDir' [2018-04-05 12:06:47,549] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, methylQA, qualimap, preseq, quast, qorts, rna_seqc, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, dedup, picard, prokka, samblaster, samtools, bamtools, jellyfish, vcftools, bbmap, bismark, hicexplorer, hicup, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, trimmomatic, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastqc, clusterflow, bcl2fastq, interop [2018-04-05 12:06:47,554] multiqc [DEBUG ] Using temporary directory for creating report: /var/folders/rp/scmd2sr56nq9cb0x9d_6_49m000dft/T/tmpd75q9s93 [2018-04-05 12:06:48,019] multiqc [DEBUG ] No samples found: custom_content [2018-04-05 12:06:48,025] multiqc [DEBUG ] No samples found: conpair [2018-04-05 12:06:48,030] multiqc [DEBUG ] No samples found: peddy [2018-04-05 12:06:48,035] multiqc [DEBUG ] No samples found: methylQA [2018-04-05 12:06:48,040] multiqc [DEBUG ] No samples found: qualimap [2018-04-05 12:06:48,045] multiqc [DEBUG ] No samples found: preseq [2018-04-05 12:06:48,050] multiqc [DEBUG ] No samples found: quast [2018-04-05 12:06:48,054] multiqc [DEBUG ] No samples found: qorts [2018-04-05 12:06:48,059] multiqc [DEBUG ] No samples found: rna_seqc [2018-04-05 12:06:48,063] multiqc [DEBUG ] No samples found: rsem [2018-04-05 12:06:48,070] multiqc [DEBUG ] No samples found: rseqc [2018-04-05 12:06:48,074] multiqc [DEBUG ] No samples found: busco [2018-04-05 12:06:48,079] multiqc [DEBUG ] No samples found: goleft_indexcov [2018-04-05 12:06:48,083] multiqc [DEBUG ] No samples found: disambiguate [2018-04-05 12:06:48,088] multiqc [DEBUG ] No samples found: supernova [2018-04-05 12:06:48,097] multiqc [DEBUG ] No samples found: deeptools [2018-04-05 12:06:48,103] multiqc [DEBUG ] No samples found: sargasso [2018-04-05 12:06:48,108] multiqc [DEBUG ] No samples found: verifybamid [2018-04-05 12:06:48,113] multiqc [DEBUG ] No samples found: homer [2018-04-05 12:06:48,118] multiqc [DEBUG ] No samples found: macs2 [2018-04-05 12:06:48,124] multiqc [DEBUG ] No samples found: theta2 [2018-04-05 12:06:48,130] multiqc [DEBUG ] No samples found: snpeff [2018-04-05 12:06:48,136] multiqc [DEBUG ] No samples found: gatk [2018-04-05 12:06:48,141] multiqc [DEBUG ] No samples found: htseq [2018-04-05 12:06:48,145] multiqc [DEBUG ] No samples found: bcftools [2018-04-05 12:06:48,151] multiqc [DEBUG ] No samples found: featureCounts [2018-04-05 12:06:48,157] multiqc [DEBUG ] No samples found: dedup [2018-04-05 12:06:48,166] multiqc [DEBUG ] No samples found: picard [2018-04-05 12:06:48,170] multiqc [DEBUG ] No samples found: prokka [2018-04-05 12:06:48,174] multiqc [DEBUG ] No samples found: samblaster [2018-04-05 12:06:48,180] multiqc [DEBUG ] No samples found: samtools [2018-04-05 12:06:48,184] multiqc [DEBUG ] No samples found: bamtools [2018-04-05 12:06:48,189] multiqc [DEBUG ] No samples found: jellyfish [2018-04-05 12:06:48,194] multiqc [DEBUG ] No samples found: vcftools [2018-04-05 12:06:48,202] multiqc [DEBUG ] No samples found: bbmap [2018-04-05 12:06:48,206] multiqc [DEBUG ] No samples found: bismark [2018-04-05 12:06:48,211] multiqc [DEBUG ] No samples found: hicexplorer [2018-04-05 12:06:48,215] multiqc [DEBUG ] No samples found: hicup [2018-04-05 12:06:48,219] multiqc [DEBUG ] No samples found: salmon [2018-04-05 12:06:48,225] multiqc [DEBUG ] No samples found: kallisto [2018-04-05 12:06:48,231] multiqc [DEBUG ] No samples found: slamdunk [2018-04-05 12:06:48,236] multiqc [DEBUG ] No samples found: star [2018-04-05 12:06:48,242] multiqc [DEBUG ] No samples found: hisat2 [2018-04-05 12:06:48,246] multiqc [DEBUG ] No samples found: tophat [2018-04-05 12:06:48,250] multiqc [DEBUG ] No samples found: bowtie2 [2018-04-05 12:06:48,255] multiqc [DEBUG ] No samples found: bowtie1 [2018-04-05 12:06:48,259] multiqc [DEBUG ] No samples found: leehom [2018-04-05 12:06:48,263] multiqc [DEBUG ] No samples found: adapterRemoval [2018-04-05 12:06:48,268] multiqc [DEBUG ] No samples found: clipandmerge [2018-04-05 12:06:48,276] multiqc.modules.cutadapt.cutadapt [INFO ] Found 1 reports [2018-04-05 12:06:48,307] multiqc.modules.flexbar.flexbar [INFO ] Found 1 logs [2018-04-05 12:06:48,318] multiqc.modules.trimmomatic.trimmomatic [INFO ] Found 1 logs [2018-04-05 12:06:48,325] multiqc [DEBUG ] No samples found: skewer [2018-04-05 12:06:48,334] multiqc.modules.sortmerna.sortmerna [INFO ] Found 1 logs [2018-04-05 12:06:48,339] multiqc [DEBUG ] No samples found: biobloomtools [2018-04-05 12:06:48,346] multiqc [DEBUG ] No samples found: fastq_screen [2018-04-05 12:06:48,352] multiqc [DEBUG ] No samples found: afterqc [2018-04-05 12:06:48,434] multiqc.modules.fastqc.fastqc [INFO ] Found 2 reports [2018-04-05 12:06:48,495] multiqc [DEBUG ] No samples found: clusterflow [2018-04-05 12:06:48,500] multiqc [DEBUG ] No samples found: bcl2fastq [2018-04-05 12:06:48,505] multiqc [DEBUG ] No samples found: interop [2018-04-05 12:06:48,514] multiqc [INFO ] Compressing plot data [2018-04-05 12:06:48,596] multiqc [INFO ] Report : multiqc_report.html [2018-04-05 12:06:48,597] multiqc [INFO ] Data : multiqc_data [2018-04-05 12:06:48,597] multiqc [DEBUG ] Moving data file from '/var/folders/rp/scmd2sr56nq9cb0x9d_6_49m000dft/T/tmpd75q9s93/multiqc_data/multiqc_cutadapt.txt' to '/Users/bebatut/Documents/galaxy/tools/tools-iuc/tools/multiqc/multiqc_data' [2018-04-05 12:06:48,597] multiqc [DEBUG ] Moving data file from '/var/folders/rp/scmd2sr56nq9cb0x9d_6_49m000dft/T/tmpd75q9s93/multiqc_data/multiqc_data.json' to '/Users/bebatut/Documents/galaxy/tools/tools-iuc/tools/multiqc/multiqc_data' [2018-04-05 12:06:48,598] multiqc [DEBUG ] Moving data file from '/var/folders/rp/scmd2sr56nq9cb0x9d_6_49m000dft/T/tmpd75q9s93/multiqc_data/multiqc_fastqc.txt' to '/Users/bebatut/Documents/galaxy/tools/tools-iuc/tools/multiqc/multiqc_data' [2018-04-05 12:06:48,598] multiqc [DEBUG ] Moving data file from '/var/folders/rp/scmd2sr56nq9cb0x9d_6_49m000dft/T/tmpd75q9s93/multiqc_data/multiqc_flexbar.txt' to '/Users/bebatut/Documents/galaxy/tools/tools-iuc/tools/multiqc/multiqc_data' [2018-04-05 12:06:48,598] multiqc [DEBUG ] Moving data file from '/var/folders/rp/scmd2sr56nq9cb0x9d_6_49m000dft/T/tmpd75q9s93/multiqc_data/multiqc_general_stats.txt' to '/Users/bebatut/Documents/galaxy/tools/tools-iuc/tools/multiqc/multiqc_data' [2018-04-05 12:06:48,598] multiqc [DEBUG ] Moving data file from '/var/folders/rp/scmd2sr56nq9cb0x9d_6_49m000dft/T/tmpd75q9s93/multiqc_data/multiqc_sortmerna.txt' to '/Users/bebatut/Documents/galaxy/tools/tools-iuc/tools/multiqc/multiqc_data' [2018-04-05 12:06:48,598] multiqc [DEBUG ] Moving data file from '/var/folders/rp/scmd2sr56nq9cb0x9d_6_49m000dft/T/tmpd75q9s93/multiqc_data/multiqc_sources.txt' to '/Users/bebatut/Documents/galaxy/tools/tools-iuc/tools/multiqc/multiqc_data' [2018-04-05 12:06:48,599] multiqc [DEBUG ] Moving data file from '/var/folders/rp/scmd2sr56nq9cb0x9d_6_49m000dft/T/tmpd75q9s93/multiqc_data/multiqc_trimmomatic.txt' to '/Users/bebatut/Documents/galaxy/tools/tools-iuc/tools/multiqc/multiqc_data' [2018-04-05 12:06:48,809] multiqc [INFO ] MultiQC complete