Mercurial > repos > iuc > multiqc
view test-data/bcftools.txt @ 0:3bad335ccea9 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 264fd61d39f252ebb81731bf6cd3349fdb39b306
author | iuc |
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date | Tue, 24 Oct 2017 06:29:59 -0400 |
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# This file was produced by bcftools stats (1.3.1+htslib-1.3.1) and can be plotted using plot-vcfstats. # The command line was: bcftools stats Test1.vcf.gz # # Definition of sets: # ID [2]id [3]tab-separated file names ID 0 Test1.vcf.gz # SN, Summary numbers: # SN [2]id [3]key [4]value SN 0 number of samples: 1 SN 0 number of records: 5522770 SN 0 number of no-ALTs: 0 SN 0 number of SNPs: 4474244 SN 0 number of MNPs: 72330 SN 0 number of indels: 902934 SN 0 number of others: 73262 SN 0 number of multiallelic sites: 0 SN 0 number of multiallelic SNP sites: 0 # TSTV, transitions/transversions: # TSTV [2]id [3]ts [4]tv [5]ts/tv [6]ts (1st ALT) [7]tv (1st ALT) [8]ts/tv (1st ALT) TSTV 0 2968539 1505704 1.97 2968539 1505704 1.97 # SiS, Singleton stats: # SiS [2]id [3]allele count [4]number of SNPs [5]number of transitions [6]number of transversions [7]number of indels [8]repeat-consistent [9]repeat-inconsistent [10]not applicable SiS 0 1 4474243 2968539 1505704 902934 0 0 902934 # AF, Stats by non-reference allele frequency: # AF [2]id [3]allele frequency [4]number of SNPs [5]number of transitions [6]number of transversions [7]number of indels [8]repeat-consistent [9]repeat-inconsistent [10]not applicable AF 0 0.000000 4474243 2968539 1505704 902934 0 0 902934 # QUAL, Stats by quality: # QUAL [2]id [3]Quality [4]number of SNPs [5]number of transitions (1st ALT) [6]number of transversions (1st ALT) [7]number of indels QUAL 0 25 0 0 0 2 QUAL 0 26 0 0 0 14 QUAL 0 27 330 117 213 52 QUAL 0 28 0 0 0 36 QUAL 0 29 698 273 425 136 QUAL 0 30 0 0 0 70 QUAL 0 31 0 0 0 70 QUAL 0 32 1071 538 533 242 QUAL 0 33 0 0 0 134 QUAL 0 34 2006 1108 898 483 QUAL 0 35 0 0 0 169 QUAL 0 36 0 0 0 114 QUAL 0 37 3117 1822 1295 717 QUAL 0 38 0 0 0 203 QUAL 0 39 4890 2607 2283 794 QUAL 0 40 475 251 224 194 QUAL 0 41 0 0 0 100 QUAL 0 42 9823 5611 4212 1577 QUAL 0 43 0 0 0 44 QUAL 0 44 1294 671 623 107 QUAL 0 45 575 308 267 113 QUAL 0 46 0 0 0 53 QUAL 0 47 1220 724 496 137 QUAL 0 48 755 419 336 160 QUAL 0 49 0 0 0 78 QUAL 0 50 2490 1450 1040 280 QUAL 0 51 389 160 229 161 QUAL 0 52 0 0 0 103 QUAL 0 53 1428 759 669 291 QUAL 0 54 170 93 77 179 QUAL 0 55 1497 897 600 419 QUAL 0 56 810 385 425 214 QUAL 0 57 0 0 0 186 QUAL 0 58 2427 1436 991 501 QUAL 0 59 1370 675 695 333 QUAL 0 60 180 97 83 185 QUAL 0 61 4117 2446 1671 678 QUAL 0 62 756 376 380 329 QUAL 0 63 3582 2107 1475 672 QUAL 0 64 2047 1062 985 355 QUAL 0 65 404 190 214 277 QUAL 0 66 7220 4196 3024 1273 QUAL 0 67 502 248 254 266 QUAL 0 68 1707 962 745 230 QUAL 0 69 2503 1319 1184 492 QUAL 0 70 0 0 0 231 QUAL 0 71 3085 1777 1308 644 QUAL 0 72 142 58 84 298 QUAL 0 73 1880 1048 832 389 QUAL 0 74 2127 1225 902 646 QUAL 0 75 1181 691 490 404 QUAL 0 76 3685 2138 1547 709 QUAL 0 77 715 403 312 398 QUAL 0 78 3041 1780 1261 641 QUAL 0 79 3287 1867 1420 790 QUAL 0 80 2149 1253 896 592 QUAL 0 81 4668 2759 1909 964 QUAL 0 82 1655 910 745 529 QUAL 0 83 3422 2034 1388 604 QUAL 0 84 5891 3393 2498 1272 QUAL 0 85 3175 1872 1303 701 QUAL 0 86 1797 1052 745 474 QUAL 0 87 2673 1550 1123 627 QUAL 0 88 3927 2334 1593 783 QUAL 0 89 2503 1498 1005 632 QUAL 0 90 4171 2440 1731 884 QUAL 0 91 3268 2019 1249 735 QUAL 0 92 3328 1950 1378 929 QUAL 0 93 4280 2602 1678 764 QUAL 0 94 1197 692 505 640 QUAL 0 95 7503 4457 3046 1207 QUAL 0 96 914 533 381 683 QUAL 0 97 7986 4762 3224 1443 QUAL 0 98 1750 1062 688 496 QUAL 0 99 3108 1917 1191 845 QUAL 0 100 3476 2094 1382 734 QUAL 0 101 3338 2007 1331 824 QUAL 0 102 3860 2320 1540 933 QUAL 0 103 3775 2295 1480 840 QUAL 0 104 3468 2115 1353 1002 QUAL 0 105 4727 2877 1850 1006 QUAL 0 106 4536 2690 1846 976 QUAL 0 107 3022 1895 1127 874 QUAL 0 108 5322 3178 2144 1189 QUAL 0 109 3979 2458 1521 957 QUAL 0 110 2929 1739 1190 787 QUAL 0 111 3070 1833 1237 818 QUAL 0 112 5040 3031 2009 1124 QUAL 0 113 4212 2576 1636 1001 QUAL 0 114 3621 2186 1435 968 QUAL 0 115 5099 2986 2113 1122 QUAL 0 116 3852 2361 1491 949 QUAL 0 117 4707 2837 1870 1269 QUAL 0 118 3947 2396 1551 879 QUAL 0 119 3287 1983 1304 823 QUAL 0 120 5247 3143 2104 1090 QUAL 0 121 2306 1414 892 808 QUAL 0 122 6622 4048 2574 1269 QUAL 0 123 1732 1099 633 749 QUAL 0 124 6548 3882 2666 1262 QUAL 0 125 2220 1308 912 753 QUAL 0 126 6761 4055 2706 1409 QUAL 0 127 5667 3398 2269 1053 QUAL 0 128 1392 861 531 654 QUAL 0 129 6512 3880 2632 1259 QUAL 0 130 2571 1566 1005 825 QUAL 0 131 4866 2920 1946 1007 QUAL 0 132 5050 3107 1943 1046 QUAL 0 133 4195 2459 1736 965 QUAL 0 134 3776 2315 1461 932 QUAL 0 135 3828 2338 1490 954 QUAL 0 136 4106 2495 1611 868 QUAL 0 137 4609 2828 1781 978 QUAL 0 138 2879 1792 1087 854 QUAL 0 139 4686 2851 1835 1092 QUAL 0 140 3988 2391 1597 997 QUAL 0 141 2942 1816 1126 802 QUAL 0 142 3706 2258 1448 928 QUAL 0 143 4544 2714 1830 1124 QUAL 0 144 3151 1878 1273 748 QUAL 0 145 3459 2069 1390 928 QUAL 0 146 3747 2282 1465 1003 QUAL 0 147 3272 2000 1272 813 QUAL 0 148 2796 1665 1131 834 QUAL 0 149 3762 2273 1489 924 QUAL 0 150 3795 2321 1474 1055 QUAL 0 151 2732 1640 1092 766 QUAL 0 152 2689 1609 1080 787 QUAL 0 153 3350 2045 1305 896 QUAL 0 154 2595 1570 1025 753 QUAL 0 155 3515 2153 1362 915 QUAL 0 156 3004 1793 1211 800 QUAL 0 157 2671 1632 1039 725 QUAL 0 158 3084 1857 1227 864 QUAL 0 159 3513 2137 1376 925 QUAL 0 160 3039 1802 1237 854 QUAL 0 161 3335 2030 1305 818 QUAL 0 162 2925 1718 1207 802 QUAL 0 163 3013 1836 1177 765 QUAL 0 164 3555 2166 1389 865 QUAL 0 165 2997 1811 1186 868 QUAL 0 166 3144 1887 1257 841 QUAL 0 167 3052 1783 1269 797 QUAL 0 168 3072 1850 1222 809 QUAL 0 169 3642 2254 1388 1000 QUAL 0 170 3396 2080 1316 886 QUAL 0 171 3205 1900 1305 843 QUAL 0 172 2939 1765 1174 808 QUAL 0 173 3385 2026 1359 920 QUAL 0 174 2737 1659 1078 756 QUAL 0 175 3371 2011 1360 910 QUAL 0 176 3390 2034 1356 914 QUAL 0 177 3485 2103 1382 963 QUAL 0 178 3053 1875 1178 845 QUAL 0 179 3009 1865 1144 823 QUAL 0 180 3840 2256 1584 989 QUAL 0 181 3110 1885 1225 885 QUAL 0 182 3929 2359 1570 969 QUAL 0 183 3321 1996 1325 927 QUAL 0 184 3421 2128 1293 967 QUAL 0 185 3535 2127 1408 1027 QUAL 0 186 3167 1964 1203 953 QUAL 0 187 3520 2100 1420 968 QUAL 0 188 3673 2153 1520 1072 QUAL 0 189 3178 1924 1254 1014 QUAL 0 190 3494 2117 1377 973 QUAL 0 191 3692 2306 1386 1067 QUAL 0 192 3427 2140 1287 1045 QUAL 0 193 3637 2246 1391 1093 QUAL 0 194 3285 2037 1248 1031 QUAL 0 195 3618 2208 1410 1059 QUAL 0 196 3818 2297 1521 1181 QUAL 0 197 3471 2109 1362 1101 QUAL 0 198 3328 1998 1330 1120 QUAL 0 199 3947 2483 1464 1286 QUAL 0 200 3755 2267 1488 1205 QUAL 0 201 3501 2114 1387 1193 QUAL 0 202 3823 2346 1477 1325 QUAL 0 203 3523 2147 1376 1263 QUAL 0 204 4091 2533 1558 1419 QUAL 0 205 3760 2309 1451 1342 QUAL 0 206 3537 2182 1355 1316 QUAL 0 207 4248 2633 1615 1457 QUAL 0 208 3900 2351 1549 1566 QUAL 0 209 4094 2582 1512 1663 QUAL 0 210 3770 2386 1384 1467 QUAL 0 211 4167 2586 1581 1750 QUAL 0 212 4021 2494 1527 1756 QUAL 0 213 4136 2536 1600 1760 QUAL 0 214 4161 2579 1582 1823 QUAL 0 215 4229 2620 1609 1906 QUAL 0 216 4546 2809 1737 2015 QUAL 0 217 4317 2693 1624 2084 QUAL 0 218 4719 2969 1750 2214 QUAL 0 219 4321 2705 1616 1997 QUAL 0 220 4733 2965 1768 2398 QUAL 0 221 4658 2919 1739 2300 QUAL 0 222 5127 3193 1934 2734 QUAL 0 223 4680 2974 1706 2468 QUAL 0 224 4964 3089 1875 2679 QUAL 0 225 5306 3294 2012 2930 QUAL 0 226 5598 3584 2014 3066 QUAL 0 227 4927 3099 1828 2916 QUAL 0 228 5765 3657 2108 3459 QUAL 0 229 5454 3415 2039 3391 QUAL 0 230 6173 3964 2209 3846 QUAL 0 231 6208 3946 2262 3928 QUAL 0 232 6191 3944 2247 3925 QUAL 0 233 6870 4392 2478 4324 QUAL 0 234 6429 4138 2291 4239 QUAL 0 235 7404 4770 2634 4744 QUAL 0 236 6979 4537 2442 4492 QUAL 0 237 8025 5154 2871 5163 QUAL 0 238 7823 5057 2766 5031 QUAL 0 239 8695 5633 3062 5578 QUAL 0 240 9342 6082 3260 5915 QUAL 0 241 8878 5700 3178 5623 QUAL 0 242 10636 6929 3707 6573 QUAL 0 243 9884 6543 3341 5864 QUAL 0 244 11179 7403 3776 6915 QUAL 0 245 12194 8018 4176 6606 QUAL 0 246 12694 8423 4271 7049 QUAL 0 247 13832 9107 4725 7147 QUAL 0 248 15033 10019 5014 7726 QUAL 0 249 16340 10981 5359 8435 QUAL 0 250 15983 10606 5377 7025 QUAL 0 251 18827 12625 6202 8959 QUAL 0 252 18985 12763 6222 7352 QUAL 0 253 23285 15668 7617 9338 QUAL 0 254 22641 15257 7384 7839 QUAL 0 255 26397 17951 8446 9732 QUAL 0 256 27497 18642 8855 8767 QUAL 0 257 31232 21346 9886 9710 QUAL 0 258 32336 21819 10517 9634 QUAL 0 259 37257 25423 11834 9932 QUAL 0 260 39314 26646 12668 10972 QUAL 0 261 43915 29773 14142 9577 QUAL 0 262 47601 32214 15387 11366 QUAL 0 263 49953 33764 16189 10165 QUAL 0 264 58772 39736 19036 11729 QUAL 0 265 57526 39175 18351 10498 QUAL 0 266 63691 43209 20482 11543 QUAL 0 267 70262 47572 22690 11472 QUAL 0 268 70319 47454 22865 11939 QUAL 0 269 75576 51140 24436 11553 QUAL 0 270 85702 58010 27692 12340 QUAL 0 271 81004 54716 26288 11922 QUAL 0 272 86215 58196 28019 12002 QUAL 0 273 97568 66002 31566 13014 QUAL 0 274 87081 58937 28144 11351 QUAL 0 275 93430 63075 30355 12262 QUAL 0 276 92973 62849 30124 12156 QUAL 0 277 91424 61649 29775 11788 QUAL 0 278 86626 58166 28460 11229 QUAL 0 279 83656 56067 27589 10917 QUAL 0 280 84709 56967 27742 11398 QUAL 0 281 75864 50950 24914 10084 QUAL 0 282 68929 46480 22449 9574 QUAL 0 283 64791 43594 21197 9747 QUAL 0 284 58085 38946 19139 8586 QUAL 0 285 54168 36401 17767 8383 QUAL 0 286 43577 29332 14245 7721 QUAL 0 287 39894 26909 12985 7220 QUAL 0 288 35137 23682 11455 6763 QUAL 0 289 31305 21324 9981 6272 QUAL 0 290 24049 16134 7915 5541 QUAL 0 291 23199 15615 7584 5330 QUAL 0 292 20562 13813 6749 5093 QUAL 0 293 19040 12855 6185 4968 QUAL 0 294 16504 11102 5402 4224 QUAL 0 295 16717 11235 5482 4456 QUAL 0 296 16778 11208 5570 4300 QUAL 0 297 16919 11450 5469 4270 QUAL 0 298 18030 12205 5825 4222 QUAL 0 299 19111 12862 6249 4485 QUAL 0 300 20921 14221 6700 4708 QUAL 0 301 22989 15387 7602 4511 QUAL 0 302 25105 17180 7925 5078 QUAL 0 303 27790 18837 8953 4970 QUAL 0 304 29714 20073 9641 4946 QUAL 0 305 32569 21949 10620 5188 QUAL 0 306 35625 24264 11361 5272 QUAL 0 307 38822 26449 12373 5606 QUAL 0 308 42847 29108 13739 6084 QUAL 0 309 45378 30695 14683 5902 QUAL 0 310 48380 32640 15740 6156 QUAL 0 311 49339 33306 16033 5770 QUAL 0 312 55058 37479 17579 6323 QUAL 0 313 55811 37800 18011 6264 QUAL 0 314 56259 38020 18239 6255 QUAL 0 315 56060 38049 18011 6169 QUAL 0 316 57791 39014 18777 6194 QUAL 0 317 55214 37201 18013 5648 QUAL 0 318 55033 37054 17979 5633 QUAL 0 319 50648 34177 16471 5211 QUAL 0 320 48084 32355 15729 5109 QUAL 0 321 43805 29749 14056 4699 QUAL 0 322 38379 25723 12656 4206 QUAL 0 323 34047 22933 11114 3851 QUAL 0 324 28776 19284 9492 3431 QUAL 0 325 23696 15884 7812 2896 QUAL 0 326 18492 12386 6106 2551 QUAL 0 327 14482 9751 4731 2011 QUAL 0 328 11451 7706 3745 1718 QUAL 0 329 8817 5911 2906 1384 QUAL 0 330 6416 4309 2107 1116 QUAL 0 331 4389 2951 1438 867 QUAL 0 332 3157 2118 1039 610 QUAL 0 333 2174 1471 703 431 QUAL 0 334 1606 1040 566 326 QUAL 0 335 1195 772 423 227 QUAL 0 336 983 597 386 168 QUAL 0 337 768 486 282 139 QUAL 0 338 672 430 242 92 QUAL 0 339 678 429 249 84 QUAL 0 340 590 397 193 72 QUAL 0 341 548 346 202 66 QUAL 0 342 536 325 211 62 QUAL 0 343 518 323 195 47 QUAL 0 344 534 340 194 48 QUAL 0 345 533 348 185 50 QUAL 0 346 494 311 183 42 QUAL 0 347 489 292 197 55 QUAL 0 348 544 343 201 42 QUAL 0 349 464 288 176 49 QUAL 0 350 504 317 187 50 QUAL 0 351 511 319 192 56 QUAL 0 352 505 332 173 41 QUAL 0 353 481 297 184 48 QUAL 0 354 500 318 182 42 QUAL 0 355 459 285 174 44 QUAL 0 356 436 277 159 44 QUAL 0 357 469 302 167 35 QUAL 0 358 429 277 152 44 QUAL 0 359 432 255 177 24 QUAL 0 360 354 244 110 34 QUAL 0 361 372 236 136 35 QUAL 0 362 353 228 125 34 QUAL 0 363 360 225 135 36 QUAL 0 364 316 217 99 26 QUAL 0 365 337 219 118 25 QUAL 0 366 283 181 102 33 QUAL 0 367 298 188 110 26 QUAL 0 368 303 185 118 30 QUAL 0 369 277 171 106 27 QUAL 0 370 313 194 119 24 QUAL 0 371 245 154 91 27 QUAL 0 372 246 150 96 24 QUAL 0 373 267 169 98 20 QUAL 0 374 252 159 93 11 QUAL 0 375 244 147 97 24 QUAL 0 376 270 169 101 17 QUAL 0 377 246 157 89 22 QUAL 0 378 226 150 76 19 QUAL 0 379 245 153 92 27 QUAL 0 380 238 149 89 19 QUAL 0 381 203 126 77 24 QUAL 0 382 216 138 78 21 QUAL 0 383 220 137 83 14 QUAL 0 384 199 132 67 12 QUAL 0 385 163 104 59 18 QUAL 0 386 176 103 73 15 QUAL 0 387 146 96 50 14 QUAL 0 388 147 101 46 23 QUAL 0 389 125 81 44 14 QUAL 0 390 137 89 48 15 QUAL 0 391 123 78 45 17 QUAL 0 392 124 69 55 12 QUAL 0 393 120 86 34 14 QUAL 0 394 98 69 29 5 QUAL 0 395 87 58 29 6 QUAL 0 396 102 74 28 12 QUAL 0 397 83 52 31 12 QUAL 0 398 92 50 42 6 QUAL 0 399 75 51 24 9 QUAL 0 400 85 54 31 13 QUAL 0 401 86 55 31 11 QUAL 0 402 69 41 28 6 QUAL 0 403 67 33 34 2 QUAL 0 404 53 31 22 9 QUAL 0 405 56 35 21 6 QUAL 0 406 57 34 23 6 QUAL 0 407 51 33 18 8 QUAL 0 408 55 33 22 1 QUAL 0 409 48 34 14 4 QUAL 0 410 42 24 18 7 QUAL 0 411 45 22 23 6 QUAL 0 412 56 26 30 5 QUAL 0 413 41 26 15 4 QUAL 0 414 59 36 23 5 QUAL 0 415 40 21 19 6 QUAL 0 416 27 15 12 1 QUAL 0 417 37 24 13 2 QUAL 0 418 25 17 8 2 QUAL 0 419 24 15 9 3 QUAL 0 420 26 15 11 1 QUAL 0 421 21 9 12 1 QUAL 0 422 24 16 8 1 QUAL 0 423 25 18 7 3 QUAL 0 424 16 11 5 0 QUAL 0 425 9 5 4 2 QUAL 0 426 18 14 4 2 QUAL 0 427 15 10 5 1 QUAL 0 428 12 9 3 1 QUAL 0 429 12 9 3 2 QUAL 0 430 11 6 5 2 QUAL 0 431 12 4 8 0 QUAL 0 432 10 5 5 1 QUAL 0 433 10 6 4 0 QUAL 0 434 12 8 4 0 QUAL 0 435 8 4 4 3 QUAL 0 436 4 1 3 3 QUAL 0 437 13 6 7 0 QUAL 0 438 9 6 3 0 QUAL 0 439 5 3 2 1 QUAL 0 440 5 4 1 0 QUAL 0 441 6 4 2 3 QUAL 0 442 2 0 2 0 QUAL 0 443 3 3 0 1 QUAL 0 444 5 1 4 4 QUAL 0 445 4 3 1 0 QUAL 0 446 5 3 2 0 QUAL 0 447 4 2 2 0 QUAL 0 448 6 2 4 0 QUAL 0 449 1 1 0 2 QUAL 0 450 1 1 0 1 QUAL 0 451 4 1 3 0 QUAL 0 452 0 0 0 1 QUAL 0 453 4 4 0 3 QUAL 0 455 2 0 2 0 QUAL 0 456 4 2 2 1 QUAL 0 458 0 0 0 1 QUAL 0 459 1 0 1 0 QUAL 0 460 4 3 1 0 QUAL 0 462 2 1 1 0 QUAL 0 463 2 1 1 0 QUAL 0 464 1 1 0 0 QUAL 0 465 4 2 2 0 QUAL 0 466 2 1 1 0 QUAL 0 467 0 0 0 1 QUAL 0 468 2 1 1 0 QUAL 0 469 0 0 0 1 QUAL 0 470 1 0 1 0 QUAL 0 471 2 1 1 1 QUAL 0 472 2 0 2 2 QUAL 0 473 1 1 0 0 QUAL 0 474 1 0 1 0 QUAL 0 476 1 1 0 0 QUAL 0 477 0 0 0 1 QUAL 0 478 0 0 0 1 QUAL 0 479 2 1 1 0 QUAL 0 480 1 0 1 0 QUAL 0 481 1 1 0 1 QUAL 0 482 1 1 0 0 QUAL 0 484 3 2 1 2 QUAL 0 485 1 1 0 0 QUAL 0 486 2 1 1 0 QUAL 0 489 0 0 0 1 QUAL 0 490 0 0 0 1 QUAL 0 491 1 0 1 0 QUAL 0 492 2 1 1 1 QUAL 0 494 2 1 1 0 QUAL 0 496 1 0 1 0 QUAL 0 497 1 0 1 0 QUAL 0 499 2 2 0 0 QUAL 0 500 0 0 0 2 QUAL 0 501 2 0 2 1 QUAL 0 502 0 0 0 1 QUAL 0 503 0 0 0 2 QUAL 0 504 0 0 0 1 QUAL 0 506 1 0 1 0 QUAL 0 508 1 1 0 0 QUAL 0 509 1 1 0 0 QUAL 0 510 1 1 0 0 QUAL 0 512 2 1 1 0 QUAL 0 517 0 0 0 1 QUAL 0 518 0 0 0 1 QUAL 0 519 1 0 1 0 QUAL 0 520 1 1 0 0 QUAL 0 521 2 1 1 2 QUAL 0 524 2 1 1 0 QUAL 0 526 2 0 2 0 QUAL 0 527 2 1 1 0 QUAL 0 533 1 1 0 0 QUAL 0 537 0 0 0 1 QUAL 0 550 1 1 0 0 QUAL 0 554 1 1 0 0 QUAL 0 558 1 1 0 0 QUAL 0 560 1 0 1 1 QUAL 0 562 1 1 0 0 QUAL 0 565 1 0 1 0 QUAL 0 567 1 0 1 1 QUAL 0 575 1 1 0 0 QUAL 0 577 1 0 1 0 QUAL 0 578 2 0 2 0 QUAL 0 579 1 1 0 0 QUAL 0 580 2 0 2 0 QUAL 0 583 1 0 1 0 QUAL 0 585 1 0 1 0 QUAL 0 588 1 1 0 0 QUAL 0 594 2 0 2 0 QUAL 0 595 0 0 0 1 QUAL 0 598 0 0 0 2 QUAL 0 604 1 1 0 0 QUAL 0 608 1 0 1 0 QUAL 0 612 0 0 0 1 QUAL 0 624 1 0 1 0 QUAL 0 627 1 0 1 0 QUAL 0 664 0 0 0 1 QUAL 0 684 0 0 0 1 # IDD, InDel distribution: # IDD [2]id [3]length (deletions negative) [4]count IDD 0 -60 2761 IDD 0 -59 60 IDD 0 -58 89 IDD 0 -57 65 IDD 0 -56 141 IDD 0 -55 85 IDD 0 -54 150 IDD 0 -53 68 IDD 0 -52 146 IDD 0 -51 96 IDD 0 -50 196 IDD 0 -49 143 IDD 0 -48 251 IDD 0 -47 109 IDD 0 -46 167 IDD 0 -45 126 IDD 0 -44 219 IDD 0 -43 116 IDD 0 -42 274 IDD 0 -41 151 IDD 0 -40 452 IDD 0 -39 204 IDD 0 -38 324 IDD 0 -37 228 IDD 0 -36 476 IDD 0 -35 269 IDD 0 -34 417 IDD 0 -33 275 IDD 0 -32 682 IDD 0 -31 332 IDD 0 -30 748 IDD 0 -29 374 IDD 0 -28 983 IDD 0 -27 513 IDD 0 -26 914 IDD 0 -25 632 IDD 0 -24 1487 IDD 0 -23 627 IDD 0 -22 1253 IDD 0 -21 778 IDD 0 -20 2355 IDD 0 -19 935 IDD 0 -18 2258 IDD 0 -17 1134 IDD 0 -16 3574 IDD 0 -15 2161 IDD 0 -14 3343 IDD 0 -13 1954 IDD 0 -12 7196 IDD 0 -11 2464 IDD 0 -10 6677 IDD 0 -9 4123 IDD 0 -8 12639 IDD 0 -7 4880 IDD 0 -6 15111 IDD 0 -5 13607 IDD 0 -4 50873 IDD 0 -3 31879 IDD 0 -2 84831 IDD 0 -1 211446 IDD 0 1 204974 IDD 0 2 71798 IDD 0 3 24987 IDD 0 4 41760 IDD 0 5 10916 IDD 0 6 12286 IDD 0 7 3696 IDD 0 8 10221 IDD 0 9 3013 IDD 0 10 5210 IDD 0 11 1711 IDD 0 12 5375 IDD 0 13 1275 IDD 0 14 2243 IDD 0 15 1482 IDD 0 16 2442 IDD 0 17 731 IDD 0 18 1359 IDD 0 19 598 IDD 0 20 1581 IDD 0 21 552 IDD 0 22 716 IDD 0 23 418 IDD 0 24 1022 IDD 0 25 430 IDD 0 26 503 IDD 0 27 310 IDD 0 28 550 IDD 0 29 230 IDD 0 30 407 IDD 0 31 200 IDD 0 32 361 IDD 0 33 154 IDD 0 34 253 IDD 0 35 164 IDD 0 36 250 IDD 0 37 118 IDD 0 38 168 IDD 0 39 123 IDD 0 40 190 IDD 0 41 106 IDD 0 42 128 IDD 0 43 122 IDD 0 44 128 IDD 0 45 99 IDD 0 46 116 IDD 0 47 82 IDD 0 48 133 IDD 0 49 88 IDD 0 50 98 IDD 0 51 81 IDD 0 52 96 IDD 0 53 70 IDD 0 54 73 IDD 0 55 74 IDD 0 56 78 IDD 0 57 92 IDD 0 58 96 IDD 0 59 79 IDD 0 60 5497 # ST, Substitution types: # ST [2]id [3]type [4]count ST 0 A>C 190164 ST 0 A>G 721395 ST 0 A>T 166827 ST 0 C>A 196831 ST 0 C>G 197211 ST 0 C>T 762114 ST 0 G>A 763594 ST 0 G>C 197866 ST 0 G>T 201005 ST 0 T>A 166222 ST 0 T>C 721436 ST 0 T>G 189578 # DP, Depth distribution # DP [2]id [3]bin [4]number of genotypes [5]fraction of genotypes (%) [6]number of sites [7]fraction of sites (%) DP 0 1 0 0.000000 4 0.000072 DP 0 2 0 0.000000 1655 0.029967 DP 0 3 0 0.000000 2091 0.037861 DP 0 4 0 0.000000 2126 0.038495 DP 0 5 0 0.000000 2259 0.040903 DP 0 6 0 0.000000 2114 0.038278 DP 0 7 0 0.000000 2132 0.038604 DP 0 8 0 0.000000 2030 0.036757 DP 0 9 0 0.000000 2118 0.038350 DP 0 10 0 0.000000 2085 0.037753 DP 0 11 0 0.000000 2033 0.036811 DP 0 12 0 0.000000 2014 0.036467 DP 0 13 0 0.000000 1995 0.036123 DP 0 14 0 0.000000 1981 0.035870 DP 0 15 0 0.000000 2018 0.036540 DP 0 16 0 0.000000 2015 0.036485 DP 0 17 0 0.000000 2070 0.037481 DP 0 18 0 0.000000 1976 0.035779 DP 0 19 0 0.000000 1962 0.035526 DP 0 20 0 0.000000 1961 0.035508 DP 0 21 0 0.000000 1925 0.034856 DP 0 22 0 0.000000 1902 0.034439 DP 0 23 0 0.000000 2069 0.037463 DP 0 24 0 0.000000 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