Mercurial > repos > iuc > multiqc
view test-data/quast.tsv @ 16:bf675f34b056 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit bd94f00ad5d023ae392ca8fc2378fd5a78bed875"
author | iuc |
---|---|
date | Sat, 16 May 2020 09:40:45 -0400 |
parents | 3bad335ccea9 |
children |
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Assembly 14892_1#15 # contigs (>= 0 bp) 545 # contigs (>= 1000 bp) 376 # contigs (>= 5000 bp) 242 # contigs (>= 10000 bp) 215 # contigs (>= 25000 bp) 181 # contigs (>= 50000 bp) 123 Total length (>= 0 bp) 18465341 Total length (>= 1000 bp) 18373173 Total length (>= 5000 bp) 18079934 Total length (>= 10000 bp) 17893099 Total length (>= 25000 bp) 17353907 Total length (>= 50000 bp) 15112131 # contigs 467 Largest contig 435484 Total length 18435361 Reference length 18916112 GC (%) 48.17 Reference GC (%) 48.21 N50 115136 NG50 112874 N75 62262 NG75 56990 L50 48 LG50 50 L75 100 LG75 106 # misassemblies 107 # misassembled contigs 82 Misassembled contigs length 4540800 # local misassemblies 132 # unaligned contigs 8 + 59 part Unaligned length 88446 Genome fraction (%) 95.482 Duplication ratio 1.016 # N's per 100 kbp 929.55 # mismatches per 100 kbp 262.21 # indels per 100 kbp 33.75 # genes 7280 + 968 part Largest alignment 356982 NA50 102129 NGA50 99244 NA75 54365 NGA75 51757 LA50 56 LGA50 59 LA75 117 LGA75 124