Mercurial > repos > iuc > multiqc
view test-data/fastp2.json.txt @ 18:c19b16e5729c draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 263b1803fbf2622dbeb283b1d965690a5dc24ec9"
| author | iuc |
|---|---|
| date | Thu, 19 Nov 2020 21:54:37 +0000 |
| parents | 1c2db0054039 |
| children |
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{ "summary": { "before_filtering": { "total_reads":198, "total_bases":49698, "q20_bases":45944, "q30_bases":43923, "q20_rate":0.924464, "q30_rate":0.883798, "read1_mean_length":251, "read2_mean_length":251, "gc_content":0.480422 }, "after_filtering": { "total_reads":194, "total_bases":45884, "q20_bases":43215, "q30_bases":41653, "q20_rate":0.941832, "q30_rate":0.907789, "read1_mean_length":236, "read2_mean_length":236, "gc_content":0.479928 } }, "filtering_result": { "passed_filter_reads": 194, "low_quality_reads": 2, "too_many_N_reads": 2, "too_short_reads": 0, "too_long_reads": 0 }, "duplication": { "rate": 0, "histogram": [69,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0], "mean_gc": [0.396022,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0] }, "insert_size": { "peak": 308, "unknown": 4, "histogram": 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"GCGCC":0, "GCGCG":0, "GCGGA":0, "GCGGT":1, "GCGGC":0, "GCGGG":1, "GGAAA":2, "GGAAT":39, "GGAAC":34, "GGAAG":0, "GGATA":16, "GGATT":0, "GGATC":52, "GGATG":40, "GGACA":2, "GGACT":1, "GGACC":0, "GGACG":0, "GGAGA":44, "GGAGT":2, "GGAGC":153, "GGAGG":0, "GGTAA":3, "GGTAT":53, "GGTAC":0, "GGTAG":11, "GGTTA":43, "GGTTT":20, "GGTTC":33, "GGTTG":1, "GGTCA":38, "GGTCT":52, "GGTCC":0, "GGTCG":1, "GGTGA":33, "GGTGT":53, "GGTGC":80, "GGTGG":2, "GGCAA":0, "GGCAT":0, "GGCAC":1, "GGCAG":40, "GGCTA":19, "GGCTT":1, "GGCTC":48, "GGCTG":0, "GGCCA":0, "GGCCT":0, "GGCCC":4, "GGCCG":0, "GGCGA":7, "GGCGT":0, "GGCGC":0, "GGCGG":0, "GGGAA":24, "GGGAT":12, "GGGAC":0, "GGGAG":53, "GGGTA":13, "GGGTT":3, "GGGTC":38, "GGGTG":131, "GGGCA":1, "GGGCT":22, "GGGCC":3, "GGGCG":0, "GGGGA":35, "GGGGT":64, "GGGGC":2, "GGGGG":126 }, "overrepresented_sequences": { } }, "command": "fastp --thread 1 --report_title fastp report for bwa-mem-fastq1_fq.fastq -i bwa-mem-fastq1_fq.fastq -o first.fastq -I bwa-mem-fastq2_fq.fastq -O second.fastq " }