view test-data/samtools_flagstat_stats.tabular @ 9:df99138d2776 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 31d721c19f5681dfe542dd23185c06c8f29f1945
author iuc
date Wed, 25 Apr 2018 07:59:52 -0400
parents e0f4a651c6b9
children
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Sample	read2_passed	mapped_failed_pct	with mate mapped to a different chr (mapQ >= 5)_passed	properly paired_passed	read1_passed	total_passed	supplementary_failed	duplicates_failed	singletons_failed	mapped_passed_pct	secondary_passed	properly paired_passed_pct	properly paired_failed_pct	singletons_passed	with mate mapped to a different chr (mapQ >= 5)_failed	supplementary_passed	duplicates_passed	flagstat_total	mapped_passed	with mate mapped to a different chr_failed	secondary_failed	properly paired_failed	with itself and mate mapped_failed	with mate mapped to a different chr_passed	paired in sequencing_failed	with itself and mate mapped_passed	singletons_passed_pct	total_failed	paired in sequencing_passed	read1_failed	mapped_failed	read2_failed	singletons_failed_pct
samtools_flagstat	0	nan	0	0	0	21040602	0	0	0	98.33	0	nan	nan	0	0	0	5448463	21040602	20689039	0	0	0	0	0	0	0	nan	0	0	0	0	0	nan