Mercurial > repos > iuc > multiqc
view test-data/post_aligner_soft_stats.tabular @ 11:f0ec41881020 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit c9c5c4dd15aed950ed9b43a294ce6c41f5732a23
| author | iuc |
|---|---|
| date | Mon, 06 Aug 2018 10:42:11 -0400 |
| parents | e0f4a651c6b9 |
| children | 1c2db0054039 |
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Sample QUAST_mqc-generalstats-N50 QUAST_mqc-generalstats-Total_length featureCounts_mqc-generalstats-percent_assigned featureCounts_mqc-generalstats-Assigned Picard_mqc-generalstats-PCT_PF_READS_ALIGNED Prokka_mqc-generalstats-contigs Prokka_mqc-generalstats-organism Prokka_mqc-generalstats-bases Prokka_mqc-generalstats-CDS Bcftools Stats_mqc-generalstats-tstv Bcftools Stats_mqc-generalstats-number_of_MNPs Bcftools Stats_mqc-generalstats-number_of_indels Bcftools Stats_mqc-generalstats-number_of_SNPs Bcftools Stats_mqc-generalstats-number_of_records Bamtools_mqc-generalstats-duplicates_pct Bamtools_mqc-generalstats-mapped_reads_pct Picard_mqc-generalstats-PERCENT_DUPLICATION Picard_mqc-generalstats-summed_median Picard_mqc-generalstats-summed_mean GATK VariantEval_mqc-generalstats-known_titv GATK VariantEval_mqc-generalstats-novel_titv HTSeq Count_mqc-generalstats-percent_assigned HTSeq Count_mqc-generalstats-assigned Picard_mqc-generalstats-PCT_MRNA_BASES Picard_mqc-generalstats-PCT_RIBOSOMAL_BASES Samtools Flagstat_mqc-generalstats-mapped_passed Samtools Stats_mqc-generalstats-raw_total_sequences Samtools Stats_mqc-generalstats-non_primary_alignments Samtools Stats_mqc-generalstats-reads_mapped Samtools Stats_mqc-generalstats-error_rate Samtools Stats_mqc-generalstats-reads_mapped_percent SnpEff_mqc-generalstats-Ts_Tv_ratio SnpEff_mqc-generalstats-Number_of_variants_before_filter SnpEff_mqc-generalstats-Change_rate Samblaster_mqc-generalstats-pct_dups 14892_1#15 115136.0 18435361.0 70: TopHat on data 1, data 4, and data 3: accepted_hits 70.82267755353567 321797 75: TopHat on data 1, data 6, and data 5: accepted_hits 69.58585803304067 445012 80: TopHat on data 1, data 8, and data 7: accepted_hits 71.76957768385707 394981 85: TopHat on data 1, data 10, and data 9: accepted_hits 72.02454351337069 437485 90: TopHat on data 1, data 12, and data 11: accepted_hits 71.33130826437625 388170 95: TopHat on data 1, data 14, and data 13: accepted_hits 70.72517103678439 453929 D11_H4K16ac_Rep1_R1_fastq_gz 0.983085 Sample1 30 Helicobacter pylori 1629978 1548 Sample2 52 Escherichia coli 162997532523 1548 Test1 1.97 72330.0 902934.0 4474244.0 5522770.0 bamtools 0.0 93.125 dataset_114 0.005582 dataset_197 176 271.809759 gatk_varianteval 0.0 2.2 htseq 0.0 0 picard_CollectRnaSeqMetrics_bam 79.62310000000001 samtools_flagstat 20689039 samtools_stats 641821.0 12111.0 641821.0 0.004248509 100.0 snpeff 0.0 972155.0 3190.0 virtual-normal 1.28