Mercurial > repos > iuc > multiqc
view test-data/macs_2.txt @ 24:f7e2f1eb3a16 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit dffbb5d421a5a5773bcb7f05933b12c45461bb58
| author | iuc |
|---|---|
| date | Mon, 02 Sep 2024 14:22:54 +0000 |
| parents | f0ec41881020 |
| children |
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# This file is generated by MACS version 2.1.1.20160309 # Command line: callpeak --name treat2 -t /private/var/folders/zn/m_qvr9zd7tq0wdtsbq255f8xypj_zg/T/tmpiNVEd5/files/000/dataset_8.dat -c /private/var/folders/zn/m_qvr9zd7tq0wdtsbq255f8xypj_zg/T/tmpiNVEd5/files/000/dataset_2.dat --format BED --gsize 2700000000 --keep-dup 1 --qvalue 0.05 --mfold 5 50 --bw 300 # ARGUMENTS LIST: # name = treat2 # format = BED # ChIP-seq file = ['/private/var/folders/zn/m_qvr9zd7tq0wdtsbq255f8xypj_zg/T/tmpiNVEd5/files/000/dataset_8.dat'] # control file = ['/private/var/folders/zn/m_qvr9zd7tq0wdtsbq255f8xypj_zg/T/tmpiNVEd5/files/000/dataset_2.dat'] # effective genome size = 2.70e+09 # band width = 300 # model fold = [5, 50] # qvalue cutoff = 5.00e-02 # Larger dataset will be scaled towards smaller dataset. # Range for calculating regional lambda is: 1000 bps and 10000 bps # Broad region calling is off # Paired-End mode is off # tag size is determined as 100 bps # total tags in treatment: 100000 # tags after filtering in treatment: 99795 # maximum duplicate tags at the same position in treatment = 1 # Redundant rate in treatment: 0.00 # total tags in control: 199978 # tags after filtering in control: 199867 # maximum duplicate tags at the same position in control = 1 # Redundant rate in control: 0.00 # d = 254 # alternative fragment length(s) may be 254 bps chr start end length abs_summit pileup -log10(pvalue) fold_enrichment -log10(qvalue) name chr1 115538 115791 254 115665 1.00 4.35859 1.98140 1.67749 MACS2_peak_1 chr1 237644 237935 292 237790 2.00 6.86347 2.97210 3.86269 MACS2_peak_2 chr1 542564 542817 254 542691 1.00 4.35859 1.98140 1.67749 MACS2_peak_3 chr1 652482 652735 254 652609 1.00 4.35859 1.98140 1.67749 MACS2_peak_4 chr1 675967 676220 254 676094 1.00 4.35859 1.98140 1.67749 MACS2_peak_5 chr1 739125 739378 254 739252 1.00 4.35859 1.98140 1.67749 MACS2_peak_6 chr1 785730 785983 254 785857 1.00 4.35859 1.98140 1.67749 MACS2_peak_7 chr1 805192 805536 345 805364 2.00 6.47268 2.96243 3.63723 MACS2_peak_8 chr1 811789 812361 573 811916 1.00 3.49990 1.95053 1.44931 MACS2_peak_9 chr1 840079 840401 323 840240 4.00 12.21969 4.95350 8.64187 MACS2_peak_10 chr1 858769 859114 346 858942 2.00 6.47268 2.96243 3.63723 MACS2_peak_11 chr1 875785 876038 254 875912 1.00 4.09830 1.97495 1.67749 MACS2_peak_12 chr1 902086 902339 254 902213 1.00 4.09830 1.97495 1.67749 MACS2_peak_13 chr1 911342 911595 254 911469 1.00 4.35859 1.98140 1.67749 MACS2_peak_14 chr1 919315 919929 615 919550 5.00 14.24284 5.92486 10.53337 MACS2_peak_15 chr1 937147 937603 457 937375 4.00 11.56776 4.93738 8.14431 MACS2_peak_16 chr1 953008 953261 254 953135 1.00 4.35859 1.98140 1.67749 MACS2_peak_17 chr1 954263 955017 755 954814 3.00 9.49316 3.96280 6.20710 MACS2_peak_18 chr1 994723 995089 367 994906 3.00 9.49316 3.96280 6.20710 MACS2_peak_19 chr1 999268 999578 311 999423 2.00 6.86347 2.97210 3.86269 MACS2_peak_20 chr1 1004656 1004909 254 1004783 1.00 4.35859 1.98140 1.67749 MACS2_peak_21 chr1 1044551 1044804 254 1044678 1.00 4.35859 1.98140 1.67749 MACS2_peak_22 chr1 1057326 1057692 367 1057509 3.00 9.49316 3.96280 6.20710 MACS2_peak_23 chr1 1105615 1105868 254 1105742 1.00 3.49990 1.95053 1.44931 MACS2_peak_24 chr1 1115032 1115285 254 1115159 1.00 4.35859 1.98140 1.67749 MACS2_peak_25 chr1 1142348 1142601 254 1142475 1.00 4.09830 1.97495 1.67749 MACS2_peak_26 chr1 1143298 1143551 254 1143425 1.00 4.09830 1.97495 1.67749 MACS2_peak_27 chr1 1166225 1166478 254 1166352 1.00 4.35859 1.98140 1.67749 MACS2_peak_28 chr1 1204174 1204427 254 1204301 1.00 4.35859 1.98140 1.67749 MACS2_peak_29 chr1 1220904 1221157 254 1221031 1.00 4.09830 1.97495 1.67749 MACS2_peak_30 chr1 1225704 1225957 254 1225831 1.00 4.35859 1.98140 1.67749 MACS2_peak_31 chr1 1227178 1227443 266 1227311 2.00 6.86347 2.97210 3.86269 MACS2_peak_32 chr1 1240549 1241123 575 1240777 3.00 8.97181 3.94991 5.83616 MACS2_peak_33 chr1 1241426 1241846 421 1241636 2.00 6.47268 2.96243 3.63723 MACS2_peak_34 chr1 1284325 1284888 564 1284452 1.00 4.35859 1.98140 1.67749 MACS2_peak_35 chr1 1307376 1307825 450 1307601 5.00 14.24284 5.92486 10.53337 MACS2_peak_36 chr1 1310554 1310807 254 1310681 1.00 4.09830 1.97495 1.67749 MACS2_peak_37 chr1 1316444 1316697 254 1316571 1.00 4.09830 1.97495 1.67749 MACS2_peak_38 chr1 1318227 1318480 254 1318354 1.00 4.35859 1.98140 1.67749 MACS2_peak_39 chr1 1334774 1335027 254 1334901 1.00 3.49990 1.95053 1.44931 MACS2_peak_40 chr1 1365743 1365996 254 1365870 1.00 4.09830 1.97495 1.67749 MACS2_peak_41 chr1 1406356 1406609 254 1406483 1.00 4.35859 1.98140 1.67749 MACS2_peak_42 chr1 1440209 1440715 507 1440462 4.00 12.21969 4.95350 8.64187 MACS2_peak_43 chr1 1440989 1441242 254 1441116 1.00 4.35859 1.98140 1.67749 MACS2_peak_44 chr1 1487432 1487685 254 1487559 1.00 4.09830 1.97495 1.67749 MACS2_peak_45 chr1 1506072 1506325 254 1506199 1.00 4.09830 1.97495 1.67749 MACS2_peak_46 chr1 1549214 1549467 254 1549341 1.00 4.09830 1.97495 1.67749 MACS2_peak_47 chr1 1555404 1555738 335 1555571 4.00 12.21969 4.95350 8.64187 MACS2_peak_48 chr1 1556892 1557145 254 1557019 1.00 4.35859 1.98140 1.67749 MACS2_peak_49 chr1 1590595 1591084 490 1590840 4.00 11.56776 4.93738 8.14431 MACS2_peak_50 chr1 1609355 1609608 254 1609482 1.00 4.35859 1.98140 1.67749 MACS2_peak_51 chr1 1610353 1610772 420 1610563 2.00 6.86347 2.97210 3.86269 MACS2_peak_52 chr1 1619961 1620214 254 1620088 1.00 4.09830 1.97495 1.67749 MACS2_peak_53 chr1 1655695 1656225 531 1655822 1.00 4.09830 1.97495 1.67749 MACS2_peak_54 chr1 1657692 1657945 254 1657819 1.00 4.09830 1.97495 1.67749 MACS2_peak_55 chr1 1680363 1680616 254 1680490 1.00 4.35859 1.98140 1.67749 MACS2_peak_56 chr1 1720444 1720697 254 1720571 1.00 4.35859 1.98140 1.67749 MACS2_peak_57 chr1 1728043 1728296 254 1728170 1.00 4.09830 1.97495 1.67749 MACS2_peak_58 chr1 1734745 1734998 254 1734872 1.00 4.35859 1.98140 1.67749 MACS2_peak_59 chr1 1743661 1743914 254 1743788 1.00 4.09830 1.97495 1.67749 MACS2_peak_60 chr1 1756326 1756579 254 1756453 1.00 3.49990 1.95053 1.44931 MACS2_peak_61 chr1 1760856 1761109 254 1760983 1.00 3.49990 1.95053 1.44931 MACS2_peak_62 chr1 1766488 1766741 254 1766615 1.00 3.49990 1.95053 1.44931 MACS2_peak_63 chr1 1787177 1787430 254 1787304 1.00 4.35859 1.98140 1.67749 MACS2_peak_64 chr1 1791336 1791589 254 1791463 1.00 4.09830 1.97495 1.67749 MACS2_peak_65 chr1 1830665 1830918 254 1830792 1.00 4.09830 1.97495 1.67749 MACS2_peak_66 chr1 1837638 1838133 496 1837886 6.00 16.98484 6.91233 12.98445 MACS2_peak_67 chr1 1839919 1840172 254 1840046 1.00 4.09830 1.97495 1.67749 MACS2_peak_68 chr1 1840298 1841007 710 1840547 5.00 15.02536 5.94420 11.12772 MACS2_peak_69 chr1 1891434 1891687 254 1891561 1.00 4.35859 1.98140 1.67749 MACS2_peak_70 chr1 1938174 1938427 254 1938301 1.00 4.35859 1.98140 1.67749 MACS2_peak_71 chr1 1974716 1975076 361 1974896 2.00 6.47268 2.96243 3.63723 MACS2_peak_72