# HG changeset patch
# User iuc
# Date 1602255419 0
# Node ID 5e33b465d8d52f36920006ab30f725da85c296bc
# Parent  bf675f34b0560b29f3eca1a4a15b4e1218d09590
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 4eb6628314458d9426ea9e6fbf6e225d93e3d0fc"

diff -r bf675f34b056 -r 5e33b465d8d5 multiqc.xml
--- a/multiqc.xml	Sat May 16 09:40:45 2020 -0400
+++ b/multiqc.xml	Fri Oct 09 14:56:59 2020 +0000
@@ -1,4 +1,4 @@
-<tool id="multiqc" name="MultiQC" version="@WRAPPER_VERSION@+galaxy0">
+<tool id="multiqc" name="MultiQC" version="@WRAPPER_VERSION@+galaxy1">
     <description>aggregate results from bioinformatics analyses into a single report</description>
     <macros>
         <token name="@WRAPPER_VERSION@">1.8</token>
@@ -115,7 +115,7 @@
             #end if
         #end for
     #elif str($repeat.software_cond.software) == "bowtie2"
-        #set $pattern = "reads; of these:"
+        #set $pattern = "% overall alignment rate"
         @LN_FILES@
     #elif str($repeat.software_cond.software) == "busco"
         ## Searches for files "short_summary_[samplename].txt"
@@ -250,7 +250,7 @@
                 #set $pattern = "picard.analysis.InsertSizeMetrics"
                 @LN_2_FILES@
             #elif str($repeat2.type) == "markdups"
-                #set $pattern = "picard.sam.DuplicationMetrics"
+                #set $pattern = "MarkDuplicates"
                 @LN_2_FILES@
             #elif str($repeat2.type) == "oxogmetrics"
                 #set $pattern = "picard.analysis.CollectOxoGMetrics"
@@ -1301,7 +1301,9 @@
 
 ----
 
-The first integration of this tool was made by Cyril Monjeaud and Yvan Le Bras (`Enancio <http://enancio.fr/>`_ and Rennes GenOuest Bio-informatics Core Facility). It is now maintained by the `Intergalactic Utilities Commission <https://galaxyproject.org/iuc>`_.
+The first integration of this tool was made by
+`@cmonjeau <https://github.com/cmonjeau>`_ and `@yvanlebras <https://github.com/yvanlebras>`_.
+It is now maintained by the `Intergalactic Utilities Commission <https://galaxyproject.org/iuc>`_.
     ]]></help>
     <citations>
         <citation type="doi">10.1093/bioinformatics/btw354</citation>