# HG changeset patch
# User iuc
# Date 1509147636 14400
# Node ID 6999173dc0c2ee8e73f4132ff7c65616d951c4ac
# Parent  3bad335ccea9027a4085f587a94c6638837516cc
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 110247de01764a544371d07eaed0308429a47daa

diff -r 3bad335ccea9 -r 6999173dc0c2 multiqc.xml
--- a/multiqc.xml	Tue Oct 24 06:29:59 2017 -0400
+++ b/multiqc.xml	Fri Oct 27 19:40:36 2017 -0400
@@ -108,7 +108,7 @@
         #for $file in $repeat.software_cond.input
             #set file_prefix = $software_dir + '/' + str($file.element_identifier)
             #if $file.metadata.column_names and $file.metadata.column_names.find(',') != -1
-                echo '$file.metadata.column_names.replace(',','\t').replace('__ob__u','').replace('u__sq__','').replace('__sq__','').replace('__cb__','')' >> '$file_prefix.summary' &&
+                echo '$file.metadata.column_names.replace(',','\t').replace('__ob__u','').replace('u__sq__','').replace('__sq__','').replace('__cb__','')' >> '${file_prefix}.summary' &&
                 cat '$file' >> '${file_prefix}.summary' &&
             #else
                 ln -s '$file' '${file_prefix}.summary' &&
@@ -322,7 +322,7 @@
             ln -s '$file' '${software_dir}/file_${i}_${j}' &&
             more $file &&
         #end for
-    #end if        
+    #end if
 #end for
 
 multiqc multiqc_WDir
@@ -531,7 +531,7 @@
                             </when>
                             <when value="junction_saturation">
                                 <param name="input" type="data" format="txt" multiple="true" label="RSeQC junction_saturation output"/>
-                            </when>                            
+                            </when>
                             <when value="read_distribution">
                                 <param name="input" type="data" format="txt,xls,tabular" multiple="true" label="RSeQC read_distribution output" help="It should contain 'Group               Total_bases         Tag_count           Tags/Kb'"/>
                             </when>