Mercurial > repos > iuc > mummer_dnadiff
comparison test-data/report.txt @ 3:c9685bc0407c draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
author | iuc |
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date | Sat, 27 Nov 2021 09:58:09 +0000 |
parents | deacc6b40cc0 |
children | 5561a1193611 |
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2:60698466facd | 3:c9685bc0407c |
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1 | 1 /tmp/tmpm1aw7z9b/files/6/1/9/dataset_619c747c-cdb5-4d85-adda-e0ec5f7fa2fe.dat /tmp/tmpm1aw7z9b/files/f/e/c/dataset_fec4ecfe-55bb-4ff9-86e1-292952d00dd1.dat |
2 | 2 NUCMER |
3 | |
4 | |
5 | |
6 | |
7 | |
8 | |
9 | |
10 | |
11 | 3 |
12 [REF] [QRY] | 4 [REF] [QRY] |
13 .A 0(0.00%) 0(0.00%) | 5 [Sequences] |
14 .A 0(0.00%) 3(23.08%) | 6 TotalSeqs 1 1 |
15 .C 0(0.00%) 0(0.00%) | 7 AlignedSeqs 1(100.0000%) 1(100.0000%) |
16 .C 0(0.00%) 5(38.46%) | 8 UnalignedSeqs 0(0.0000%) 0(0.0000%) |
17 .G 0(0.00%) 0(0.00%) | 9 |
18 .G 1(7.69%) 2(15.38%) | 10 [Bases] |
19 .T 0(0.00%) 0(0.00%) | 11 TotalBases 6480 5460 |
20 .T 2(15.38%) 0(0.00%) | 12 AlignedBases 670(10.3395%) 663(12.1429%) |
21 /Users/nickeener/GalaxyProjects/tools-iuc/tools/mummer4/test-data/human_aqp3.fasta /Users/nickeener/GalaxyProjects/tools-iuc/tools/mummer4/test-data/mouse_aqp3.fasta | 13 UnalignedBases 5810(89.6605%) 4797(87.8571%) |
14 | |
15 [Alignments] | |
22 1-to-1 2 2 | 16 1-to-1 2 2 |
23 A. 0(0.00%) 0(0.00%) | 17 TotalLength 670 663 |
24 A. 3(23.08%) 0(0.00%) | 18 AvgLength 335.0000 331.5000 |
25 AC 6(7.69%) 5(6.41%) | 19 AvgIdentity 86.4791 86.4791 |
26 AC 1(100.00%) 0(0.00%) | 20 |
27 AG 0(0.00%) 0(0.00%) | 21 M-to-M 2 2 |
28 AG 2(2.56%) 5(6.41%) | 22 TotalLength 670 663 |
29 AT 0(0.00%) 0(0.00%) | 23 AvgLength 335.0000 331.5000 |
30 AT 2(2.56%) 2(2.56%) | 24 AvgIdentity 86.4791 86.4791 |
31 AlignedBases 670(10.34%) 663(12.14%) | 25 |
32 AlignedSeqs 1(100.00%) 1(100.00%) | 26 [Feature Estimates] |
33 AvgIdentity 86.48 86.48 | |
34 AvgIdentity 86.48 86.48 | |
35 AvgLength 335.00 331.50 | |
36 AvgLength 335.00 331.50 | |
37 Breakpoints 4 4 | 27 Breakpoints 4 4 |
38 C. 0(0.00%) 0(0.00%) | 28 Relocations 0 0 |
39 C. 5(38.46%) 0(0.00%) | 29 Translocations 0 0 |
40 CA 0(0.00%) 1(100.00%) | 30 Inversions 0 0 |
41 CA 5(6.41%) 6(7.69%) | 31 |
42 CG 0(0.00%) 0(0.00%) | 32 Insertions 3 3 |
43 CG 6(7.69%) 6(7.69%) | |
44 CT 0(0.00%) 0(0.00%) | |
45 CT 28(35.90%) 9(11.54%) | |
46 G. 0(0.00%) 0(0.00%) | |
47 G. 2(15.38%) 1(7.69%) | |
48 GA 0(0.00%) 0(0.00%) | |
49 GA 5(6.41%) 2(2.56%) | |
50 GC 0(0.00%) 0(0.00%) | |
51 GC 6(7.69%) 6(7.69%) | |
52 GT 0(0.00%) 0(0.00%) | |
53 GT 5(6.41%) 2(2.56%) | |
54 InsertionAvg 1936.67 1599.00 | |
55 InsertionSum 5810 4797 | 33 InsertionSum 5810 4797 |
56 Insertions 3 3 | 34 InsertionAvg 1936.6667 1599.0000 |
57 Inversions 0 0 | 35 |
58 M-to-M 2 2 | |
59 NUCMER | |
60 Relocations 0 0 | |
61 T. 0(0.00%) 0(0.00%) | |
62 T. 0(0.00%) 2(15.38%) | |
63 TA 0(0.00%) 0(0.00%) | |
64 TA 2(2.56%) 2(2.56%) | |
65 TC 0(0.00%) 0(0.00%) | |
66 TC 9(11.54%) 28(35.90%) | |
67 TG 0(0.00%) 0(0.00%) | |
68 TG 2(2.56%) 5(6.41%) | |
69 TandemIns 0 0 | 36 TandemIns 0 0 |
70 TandemInsAvg 0.00 0.00 | |
71 TandemInsSum 0 0 | 37 TandemInsSum 0 0 |
72 TotalBases 6480 5460 | 38 TandemInsAvg 0.0000 0.0000 |
39 | |
40 [SNPs] | |
41 TotalSNPs 78 78 | |
42 TG 2(2.5641%) 5(6.4103%) | |
43 TC 9(11.5385%) 28(35.8974%) | |
44 TA 2(2.5641%) 2(2.5641%) | |
45 GC 6(7.6923%) 6(7.6923%) | |
46 GA 5(6.4103%) 2(2.5641%) | |
47 GT 5(6.4103%) 2(2.5641%) | |
48 CT 28(35.8974%) 9(11.5385%) | |
49 CA 5(6.4103%) 6(7.6923%) | |
50 CG 6(7.6923%) 6(7.6923%) | |
51 AT 2(2.5641%) 2(2.5641%) | |
52 AG 2(2.5641%) 5(6.4103%) | |
53 AC 6(7.6923%) 5(6.4103%) | |
54 | |
55 TotalGSNPs 1 1 | |
56 TA 0(0.0000%) 0(0.0000%) | |
57 TG 0(0.0000%) 0(0.0000%) | |
58 TC 0(0.0000%) 0(0.0000%) | |
59 AG 0(0.0000%) 0(0.0000%) | |
60 AC 1(100.0000%) 0(0.0000%) | |
61 AT 0(0.0000%) 0(0.0000%) | |
62 GC 0(0.0000%) 0(0.0000%) | |
63 GA 0(0.0000%) 0(0.0000%) | |
64 GT 0(0.0000%) 0(0.0000%) | |
65 CT 0(0.0000%) 0(0.0000%) | |
66 CG 0(0.0000%) 0(0.0000%) | |
67 CA 0(0.0000%) 1(100.0000%) | |
68 | |
69 TotalIndels 13 13 | |
70 T. 0(0.0000%) 2(15.3846%) | |
71 G. 2(15.3846%) 1(7.6923%) | |
72 C. 5(38.4615%) 0(0.0000%) | |
73 A. 3(23.0769%) 0(0.0000%) | |
74 .G 1(7.6923%) 2(15.3846%) | |
75 .C 0(0.0000%) 5(38.4615%) | |
76 .A 0(0.0000%) 3(23.0769%) | |
77 .T 2(15.3846%) 0(0.0000%) | |
78 | |
73 TotalGIndels 0 0 | 79 TotalGIndels 0 0 |
74 TotalGSNPs 1 1 | 80 T. 0(0.0000%) 0(0.0000%) |
75 TotalIndels 13 13 | 81 A. 0(0.0000%) 0(0.0000%) |
76 TotalLength 670 663 | 82 G. 0(0.0000%) 0(0.0000%) |
77 TotalLength 670 663 | 83 C. 0(0.0000%) 0(0.0000%) |
78 TotalSNPs 78 78 | 84 .A 0(0.0000%) 0(0.0000%) |
79 TotalSeqs 1 1 | 85 .C 0(0.0000%) 0(0.0000%) |
80 Translocations 0 0 | 86 .G 0(0.0000%) 0(0.0000%) |
81 UnalignedBases 5810(89.66%) 4797(87.86%) | 87 .T 0(0.0000%) 0(0.0000%) |
82 UnalignedSeqs 0(0.00%) 0(0.00%) | |
83 [Alignments] | |
84 [Bases] | |
85 [Feature Estimates] | |
86 [SNPs] | |
87 [Sequences] |