Mercurial > repos > iuc > mummer_dnadiff

comparison test-data/report.txt @ 4:5561a1193611 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit 026db7297e987c1b7ce7f5dd4f8746d1bd435538
author iuc
date Mon, 18 Mar 2024 12:40:51 +0000
parents c9685bc0407c
children
comparison
equal deleted inserted replaced
3:c9685bc0407c 4:5561a1193611
1 /tmp/tmpm1aw7z9b/files/6/1/9/dataset_619c747c-cdb5-4d85-adda-e0ec5f7fa2fe.dat /tmp/tmpm1aw7z9b/files/f/e/c/dataset_fec4ecfe-55bb-4ff9-86e1-292952d00dd1.dat 1 /tmp/tmpmprg208i/files/f/1/b/dataset_f1b7734e-9d42-4c7c-9775-5f18da934854.dat /tmp/tmpmprg208i/files/6/f/5/dataset_6f561e62-f409-4d5b-9469-6080685d3666.dat
2 NUCMER 2 NUCMER
3 3
4 [REF] [QRY] 4 [REF] [QRY]
5 [Sequences] 5 [Sequences]
6 TotalSeqs 1 1 6 TotalSeqs 1 1
37 TandemInsSum 0 0 37 TandemInsSum 0 0
38 TandemInsAvg 0.0000 0.0000 38 TandemInsAvg 0.0000 0.0000
39 39
40 [SNPs] 40 [SNPs]
41 TotalSNPs 78 78 41 TotalSNPs 78 78
42 AT 2(2.5641%) 2(2.5641%)
43 AC 6(7.6923%) 5(6.4103%)
44 AG 2(2.5641%) 5(6.4103%)
45 TA 2(2.5641%) 2(2.5641%)
42 TG 2(2.5641%) 5(6.4103%) 46 TG 2(2.5641%) 5(6.4103%)
43 TC 9(11.5385%) 28(35.8974%) 47 TC 9(11.5385%) 28(35.8974%)
44 TA 2(2.5641%) 2(2.5641%)
45 GC 6(7.6923%) 6(7.6923%)
46 GA 5(6.4103%) 2(2.5641%)
47 GT 5(6.4103%) 2(2.5641%)
48 CT 28(35.8974%) 9(11.5385%) 48 CT 28(35.8974%) 9(11.5385%)
49 CA 5(6.4103%) 6(7.6923%) 49 CA 5(6.4103%) 6(7.6923%)
50 CG 6(7.6923%) 6(7.6923%) 50 CG 6(7.6923%) 6(7.6923%)
51 AT 2(2.5641%) 2(2.5641%) 51 GT 5(6.4103%) 2(2.5641%)
52 AG 2(2.5641%) 5(6.4103%) 52 GA 5(6.4103%) 2(2.5641%)
53 AC 6(7.6923%) 5(6.4103%) 53 GC 6(7.6923%) 6(7.6923%)
54 54
55 TotalGSNPs 1 1 55 TotalGSNPs 1 1
56 GT 0(0.0000%) 0(0.0000%)
57 GA 0(0.0000%) 0(0.0000%)
58 GC 0(0.0000%) 0(0.0000%)
59 CG 0(0.0000%) 0(0.0000%)
60 CT 0(0.0000%) 0(0.0000%)
61 CA 0(0.0000%) 1(100.0000%)
62 TC 0(0.0000%) 0(0.0000%)
63 TG 0(0.0000%) 0(0.0000%)
56 TA 0(0.0000%) 0(0.0000%) 64 TA 0(0.0000%) 0(0.0000%)
57 TG 0(0.0000%) 0(0.0000%) 65 AT 0(0.0000%) 0(0.0000%)
58 TC 0(0.0000%) 0(0.0000%)
59 AG 0(0.0000%) 0(0.0000%) 66 AG 0(0.0000%) 0(0.0000%)
60 AC 1(100.0000%) 0(0.0000%) 67 AC 1(100.0000%) 0(0.0000%)
61 AT 0(0.0000%) 0(0.0000%)
62 GC 0(0.0000%) 0(0.0000%)
63 GA 0(0.0000%) 0(0.0000%)
64 GT 0(0.0000%) 0(0.0000%)
65 CT 0(0.0000%) 0(0.0000%)
66 CG 0(0.0000%) 0(0.0000%)
67 CA 0(0.0000%) 1(100.0000%)
68 68
69 TotalIndels 13 13 69 TotalIndels 13 13
70 A. 3(23.0769%) 0(0.0000%)
70 T. 0(0.0000%) 2(15.3846%) 71 T. 0(0.0000%) 2(15.3846%)
72 C. 5(38.4615%) 0(0.0000%)
71 G. 2(15.3846%) 1(7.6923%) 73 G. 2(15.3846%) 1(7.6923%)
72 C. 5(38.4615%) 0(0.0000%)
73 A. 3(23.0769%) 0(0.0000%)
74 .G 1(7.6923%) 2(15.3846%)
75 .C 0(0.0000%) 5(38.4615%)
76 .A 0(0.0000%) 3(23.0769%) 74 .A 0(0.0000%) 3(23.0769%)
77 .T 2(15.3846%) 0(0.0000%) 75 .T 2(15.3846%) 0(0.0000%)
76 .C 0(0.0000%) 5(38.4615%)
77 .G 1(7.6923%) 2(15.3846%)
78 78
79 TotalGIndels 0 0 79 TotalGIndels 0 0
80 G. 0(0.0000%) 0(0.0000%)
81 C. 0(0.0000%) 0(0.0000%)
80 T. 0(0.0000%) 0(0.0000%) 82 T. 0(0.0000%) 0(0.0000%)
81 A. 0(0.0000%) 0(0.0000%) 83 A. 0(0.0000%) 0(0.0000%)
82 G. 0(0.0000%) 0(0.0000%)
83 C. 0(0.0000%) 0(0.0000%)
84 .A 0(0.0000%) 0(0.0000%)
85 .C 0(0.0000%) 0(0.0000%) 84 .C 0(0.0000%) 0(0.0000%)
86 .G 0(0.0000%) 0(0.0000%) 85 .G 0(0.0000%) 0(0.0000%)
86 .A 0(0.0000%) 0(0.0000%)
87 .T 0(0.0000%) 0(0.0000%) 87 .T 0(0.0000%) 0(0.0000%)