Mercurial > repos > iuc > mummer_dnadiff

diff dnadiff.xml @ 4:5561a1193611 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit 026db7297e987c1b7ce7f5dd4f8746d1bd435538
author iuc
date Mon, 18 Mar 2024 12:40:51 +0000
parents c9685bc0407c
children
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line diff
--- a/dnadiff.xml	Sat Nov 27 09:58:09 2021 +0000
+++ b/dnadiff.xml	Mon Mar 18 12:40:51 2024 +0000
@@ -12,7 +12,7 @@
         dnadiff
             'reference.fa' 'query.fa'
 
-        ]]>  
+        ]]>
     </command>
     <inputs>
         <param name="reference_sequence" type="data" format="fasta" label="Reference Sequence" help="FastA or multi-FastA" />
@@ -48,7 +48,7 @@
         <data name="snps" format="tabular" from_work_dir="out.snps" label="${tool.name} on ${on_string}: snps" >
             <filter> report_only == 'no' </filter>
             <actions>
-            	<action name="column_names" type="metadata" default="[P1], [REF SUB], [QUERY SUB], [P2], [BUFF], [DIST], [LEN REF], [LEN QUERY], [REF FRAME], [QUERY FRAME], [REF TAG], [QUERY TAG]" />
+                <action name="column_names" type="metadata" default="[P1], [REF SUB], [QUERY SUB], [P2], [BUFF], [DIST], [LEN REF], [LEN QUERY], [REF FRAME], [QUERY FRAME], [REF TAG], [QUERY TAG]" />
             </actions>
         </data>
         <data name="rdiff" format="tabular" from_work_dir="out.rdiff" label="${tool.name} on ${on_string}: rdiff" >
@@ -65,7 +65,7 @@
         </data>
     </outputs>
     <tests>
-        <test>
+        <test  expect_num_outputs="9">
             <param name="reference_sequence" ftype="fasta" value="human_aqp3.fasta" />
             <param name="query_sequence" ftype="fasta" value="mouse_aqp3.fasta"/>
             <param name="report_only" value="no" />