Mercurial > repos > iuc > mummer_mummer

annotate test-data/report.txt @ 5:57f042937ba7 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit 026db7297e987c1b7ce7f5dd4f8746d1bd435538
author iuc
date Mon, 18 Mar 2024 12:41:39 +0000
parents bcd65de9725b
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
5
57f042937ba7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit 026db7297e987c1b7ce7f5dd4f8746d1bd435538
iuc
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diff changeset
1 /tmp/tmpmprg208i/files/f/1/b/dataset_f1b7734e-9d42-4c7c-9775-5f18da934854.dat /tmp/tmpmprg208i/files/6/f/5/dataset_6f561e62-f409-4d5b-9469-6080685d3666.dat
4
bcd65de9725b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
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diff changeset
2 NUCMER
0
26f2cc1cc1e9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit 8133565adbfc012fa54b96449c2a18d044049107
iuc
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3
26f2cc1cc1e9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit 8133565adbfc012fa54b96449c2a18d044049107
iuc
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diff changeset
4 [REF] [QRY]
4
bcd65de9725b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
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5 [Sequences]
bcd65de9725b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
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6 TotalSeqs 1 1
bcd65de9725b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
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7 AlignedSeqs 1(100.0000%) 1(100.0000%)
bcd65de9725b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
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8 UnalignedSeqs 0(0.0000%) 0(0.0000%)
bcd65de9725b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
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9
bcd65de9725b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
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diff changeset
10 [Bases]
bcd65de9725b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
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11 TotalBases 6480 5460
bcd65de9725b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
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12 AlignedBases 670(10.3395%) 663(12.1429%)
bcd65de9725b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
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13 UnalignedBases 5810(89.6605%) 4797(87.8571%)
bcd65de9725b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
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14
bcd65de9725b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
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15 [Alignments]
0
26f2cc1cc1e9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit 8133565adbfc012fa54b96449c2a18d044049107
iuc
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16 1-to-1 2 2
4
bcd65de9725b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
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17 TotalLength 670 663
bcd65de9725b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
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diff changeset
18 AvgLength 335.0000 331.5000
bcd65de9725b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
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19 AvgIdentity 86.4791 86.4791
bcd65de9725b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
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20
bcd65de9725b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
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21 M-to-M 2 2
bcd65de9725b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
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22 TotalLength 670 663
bcd65de9725b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
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23 AvgLength 335.0000 331.5000
bcd65de9725b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
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24 AvgIdentity 86.4791 86.4791
bcd65de9725b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
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25
bcd65de9725b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
26 [Feature Estimates]
0
26f2cc1cc1e9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit 8133565adbfc012fa54b96449c2a18d044049107
iuc
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27 Breakpoints 4 4
4
bcd65de9725b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
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28 Relocations 0 0
bcd65de9725b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
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29 Translocations 0 0
0
26f2cc1cc1e9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit 8133565adbfc012fa54b96449c2a18d044049107
iuc
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30 Inversions 0 0
4
bcd65de9725b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
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31
bcd65de9725b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
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32 Insertions 3 3
bcd65de9725b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
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33 InsertionSum 5810 4797
bcd65de9725b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
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34 InsertionAvg 1936.6667 1599.0000
bcd65de9725b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
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35
0
26f2cc1cc1e9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit 8133565adbfc012fa54b96449c2a18d044049107
iuc
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diff changeset
36 TandemIns 0 0
26f2cc1cc1e9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit 8133565adbfc012fa54b96449c2a18d044049107
iuc
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37 TandemInsSum 0 0
4
bcd65de9725b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
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38 TandemInsAvg 0.0000 0.0000
bcd65de9725b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
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39
bcd65de9725b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
40 [SNPs]
0
26f2cc1cc1e9 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit 8133565adbfc012fa54b96449c2a18d044049107
iuc
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41 TotalSNPs 78 78
5
57f042937ba7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit 026db7297e987c1b7ce7f5dd4f8746d1bd435538
iuc
parents: 4
diff changeset
42 AT 2(2.5641%) 2(2.5641%)
57f042937ba7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit 026db7297e987c1b7ce7f5dd4f8746d1bd435538
iuc
parents: 4
diff changeset
43 AC 6(7.6923%) 5(6.4103%)
57f042937ba7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit 026db7297e987c1b7ce7f5dd4f8746d1bd435538
iuc
parents: 4
diff changeset
44 AG 2(2.5641%) 5(6.4103%)
57f042937ba7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit 026db7297e987c1b7ce7f5dd4f8746d1bd435538
iuc
parents: 4
diff changeset
45 TA 2(2.5641%) 2(2.5641%)
4
bcd65de9725b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
46 TG 2(2.5641%) 5(6.4103%)
bcd65de9725b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
47 TC 9(11.5385%) 28(35.8974%)
bcd65de9725b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
48 CT 28(35.8974%) 9(11.5385%)
bcd65de9725b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
49 CA 5(6.4103%) 6(7.6923%)
bcd65de9725b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
50 CG 6(7.6923%) 6(7.6923%)
5
57f042937ba7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit 026db7297e987c1b7ce7f5dd4f8746d1bd435538
iuc
parents: 4
diff changeset
51 GT 5(6.4103%) 2(2.5641%)
57f042937ba7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit 026db7297e987c1b7ce7f5dd4f8746d1bd435538
iuc
parents: 4
diff changeset
52 GA 5(6.4103%) 2(2.5641%)
57f042937ba7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit 026db7297e987c1b7ce7f5dd4f8746d1bd435538
iuc
parents: 4
diff changeset
53 GC 6(7.6923%) 6(7.6923%)
4
bcd65de9725b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
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54
bcd65de9725b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
55 TotalGSNPs 1 1
5
57f042937ba7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit 026db7297e987c1b7ce7f5dd4f8746d1bd435538
iuc
parents: 4
diff changeset
56 GT 0(0.0000%) 0(0.0000%)
57f042937ba7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit 026db7297e987c1b7ce7f5dd4f8746d1bd435538
iuc
parents: 4
diff changeset
57 GA 0(0.0000%) 0(0.0000%)
57f042937ba7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit 026db7297e987c1b7ce7f5dd4f8746d1bd435538
iuc
parents: 4
diff changeset
58 GC 0(0.0000%) 0(0.0000%)
57f042937ba7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit 026db7297e987c1b7ce7f5dd4f8746d1bd435538
iuc
parents: 4
diff changeset
59 CG 0(0.0000%) 0(0.0000%)
57f042937ba7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit 026db7297e987c1b7ce7f5dd4f8746d1bd435538
iuc
parents: 4
diff changeset
60 CT 0(0.0000%) 0(0.0000%)
57f042937ba7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit 026db7297e987c1b7ce7f5dd4f8746d1bd435538
iuc
parents: 4
diff changeset
61 CA 0(0.0000%) 1(100.0000%)
57f042937ba7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit 026db7297e987c1b7ce7f5dd4f8746d1bd435538
iuc
parents: 4
diff changeset
62 TC 0(0.0000%) 0(0.0000%)
4
bcd65de9725b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
63 TG 0(0.0000%) 0(0.0000%)
5
57f042937ba7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit 026db7297e987c1b7ce7f5dd4f8746d1bd435538
iuc
parents: 4
diff changeset
64 TA 0(0.0000%) 0(0.0000%)
57f042937ba7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit 026db7297e987c1b7ce7f5dd4f8746d1bd435538
iuc
parents: 4
diff changeset
65 AT 0(0.0000%) 0(0.0000%)
4
bcd65de9725b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
66 AG 0(0.0000%) 0(0.0000%)
bcd65de9725b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
67 AC 1(100.0000%) 0(0.0000%)
bcd65de9725b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
68
bcd65de9725b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
69 TotalIndels 13 13
5
57f042937ba7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit 026db7297e987c1b7ce7f5dd4f8746d1bd435538
iuc
parents: 4
diff changeset
70 A. 3(23.0769%) 0(0.0000%)
4
bcd65de9725b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
71 T. 0(0.0000%) 2(15.3846%)
bcd65de9725b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
72 C. 5(38.4615%) 0(0.0000%)
5
57f042937ba7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit 026db7297e987c1b7ce7f5dd4f8746d1bd435538
iuc
parents: 4
diff changeset
73 G. 2(15.3846%) 1(7.6923%)
4
bcd65de9725b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
74 .A 0(0.0000%) 3(23.0769%)
bcd65de9725b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
75 .T 2(15.3846%) 0(0.0000%)
5
57f042937ba7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit 026db7297e987c1b7ce7f5dd4f8746d1bd435538
iuc
parents: 4
diff changeset
76 .C 0(0.0000%) 5(38.4615%)
57f042937ba7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit 026db7297e987c1b7ce7f5dd4f8746d1bd435538
iuc
parents: 4
diff changeset
77 .G 1(7.6923%) 2(15.3846%)
4
bcd65de9725b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
78
bcd65de9725b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
79 TotalGIndels 0 0
5
57f042937ba7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit 026db7297e987c1b7ce7f5dd4f8746d1bd435538
iuc
parents: 4
diff changeset
80 G. 0(0.0000%) 0(0.0000%)
57f042937ba7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit 026db7297e987c1b7ce7f5dd4f8746d1bd435538
iuc
parents: 4
diff changeset
81 C. 0(0.0000%) 0(0.0000%)
4
bcd65de9725b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
82 T. 0(0.0000%) 0(0.0000%)
bcd65de9725b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
83 A. 0(0.0000%) 0(0.0000%)
bcd65de9725b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
84 .C 0(0.0000%) 0(0.0000%)
bcd65de9725b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
iuc
parents: 0
diff changeset
85 .G 0(0.0000%) 0(0.0000%)
5
57f042937ba7 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit 026db7297e987c1b7ce7f5dd4f8746d1bd435538
iuc
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bcd65de9725b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
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