view test-data/report.txt @ 5:57f042937ba7 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit 026db7297e987c1b7ce7f5dd4f8746d1bd435538
author iuc
date Mon, 18 Mar 2024 12:41:39 +0000
parents bcd65de9725b
children
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/tmp/tmpmprg208i/files/f/1/b/dataset_f1b7734e-9d42-4c7c-9775-5f18da934854.dat /tmp/tmpmprg208i/files/6/f/5/dataset_6f561e62-f409-4d5b-9469-6080685d3666.dat
NUCMER

                               [REF]                [QRY]
[Sequences]
TotalSeqs                          1                    1
AlignedSeqs              1(100.0000%)          1(100.0000%)
UnalignedSeqs             0(0.0000%)           0(0.0000%)

[Bases]
TotalBases                      6480                 5460
AlignedBases           670(10.3395%)        663(12.1429%)
UnalignedBases        5810(89.6605%)       4797(87.8571%)

[Alignments]
1-to-1                             2                    2
TotalLength                      670                  663
AvgLength                   335.0000             331.5000
AvgIdentity                  86.4791              86.4791

M-to-M                             2                    2
TotalLength                      670                  663
AvgLength                   335.0000             331.5000
AvgIdentity                  86.4791              86.4791

[Feature Estimates]
Breakpoints                        4                    4
Relocations                        0                    0
Translocations                     0                    0
Inversions                         0                    0

Insertions                         3                    3
InsertionSum                    5810                 4797
InsertionAvg               1936.6667            1599.0000

TandemIns                          0                    0
TandemInsSum                       0                    0
TandemInsAvg                  0.0000               0.0000

[SNPs]
TotalSNPs                         78                   78
AT                        2(2.5641%)           2(2.5641%)
AC                        6(7.6923%)           5(6.4103%)
AG                        2(2.5641%)           5(6.4103%)
TA                        2(2.5641%)           2(2.5641%)
TG                        2(2.5641%)           5(6.4103%)
TC                       9(11.5385%)         28(35.8974%)
CT                      28(35.8974%)          9(11.5385%)
CA                        5(6.4103%)           6(7.6923%)
CG                        6(7.6923%)           6(7.6923%)
GT                        5(6.4103%)           2(2.5641%)
GA                        5(6.4103%)           2(2.5641%)
GC                        6(7.6923%)           6(7.6923%)

TotalGSNPs                         1                    1
GT                        0(0.0000%)           0(0.0000%)
GA                        0(0.0000%)           0(0.0000%)
GC                        0(0.0000%)           0(0.0000%)
CG                        0(0.0000%)           0(0.0000%)
CT                        0(0.0000%)           0(0.0000%)
CA                        0(0.0000%)          1(100.0000%)
TC                        0(0.0000%)           0(0.0000%)
TG                        0(0.0000%)           0(0.0000%)
TA                        0(0.0000%)           0(0.0000%)
AT                        0(0.0000%)           0(0.0000%)
AG                        0(0.0000%)           0(0.0000%)
AC                       1(100.0000%)           0(0.0000%)

TotalIndels                       13                   13
A.                       3(23.0769%)           0(0.0000%)
T.                        0(0.0000%)          2(15.3846%)
C.                       5(38.4615%)           0(0.0000%)
G.                       2(15.3846%)           1(7.6923%)
.A                        0(0.0000%)          3(23.0769%)
.T                       2(15.3846%)           0(0.0000%)
.C                        0(0.0000%)          5(38.4615%)
.G                        1(7.6923%)          2(15.3846%)

TotalGIndels                       0                    0
G.                        0(0.0000%)           0(0.0000%)
C.                        0(0.0000%)           0(0.0000%)
T.                        0(0.0000%)           0(0.0000%)
A.                        0(0.0000%)           0(0.0000%)
.C                        0(0.0000%)           0(0.0000%)
.G                        0(0.0000%)           0(0.0000%)
.A                        0(0.0000%)           0(0.0000%)
.T                        0(0.0000%)           0(0.0000%)