Mercurial > repos > iuc > mummer_mummer
view test-data/report.txt @ 5:57f042937ba7 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit 026db7297e987c1b7ce7f5dd4f8746d1bd435538
| author | iuc |
|---|---|
| date | Mon, 18 Mar 2024 12:41:39 +0000 |
| parents | bcd65de9725b |
| children |
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/tmp/tmpmprg208i/files/f/1/b/dataset_f1b7734e-9d42-4c7c-9775-5f18da934854.dat /tmp/tmpmprg208i/files/6/f/5/dataset_6f561e62-f409-4d5b-9469-6080685d3666.dat NUCMER [REF] [QRY] [Sequences] TotalSeqs 1 1 AlignedSeqs 1(100.0000%) 1(100.0000%) UnalignedSeqs 0(0.0000%) 0(0.0000%) [Bases] TotalBases 6480 5460 AlignedBases 670(10.3395%) 663(12.1429%) UnalignedBases 5810(89.6605%) 4797(87.8571%) [Alignments] 1-to-1 2 2 TotalLength 670 663 AvgLength 335.0000 331.5000 AvgIdentity 86.4791 86.4791 M-to-M 2 2 TotalLength 670 663 AvgLength 335.0000 331.5000 AvgIdentity 86.4791 86.4791 [Feature Estimates] Breakpoints 4 4 Relocations 0 0 Translocations 0 0 Inversions 0 0 Insertions 3 3 InsertionSum 5810 4797 InsertionAvg 1936.6667 1599.0000 TandemIns 0 0 TandemInsSum 0 0 TandemInsAvg 0.0000 0.0000 [SNPs] TotalSNPs 78 78 AT 2(2.5641%) 2(2.5641%) AC 6(7.6923%) 5(6.4103%) AG 2(2.5641%) 5(6.4103%) TA 2(2.5641%) 2(2.5641%) TG 2(2.5641%) 5(6.4103%) TC 9(11.5385%) 28(35.8974%) CT 28(35.8974%) 9(11.5385%) CA 5(6.4103%) 6(7.6923%) CG 6(7.6923%) 6(7.6923%) GT 5(6.4103%) 2(2.5641%) GA 5(6.4103%) 2(2.5641%) GC 6(7.6923%) 6(7.6923%) TotalGSNPs 1 1 GT 0(0.0000%) 0(0.0000%) GA 0(0.0000%) 0(0.0000%) GC 0(0.0000%) 0(0.0000%) CG 0(0.0000%) 0(0.0000%) CT 0(0.0000%) 0(0.0000%) CA 0(0.0000%) 1(100.0000%) TC 0(0.0000%) 0(0.0000%) TG 0(0.0000%) 0(0.0000%) TA 0(0.0000%) 0(0.0000%) AT 0(0.0000%) 0(0.0000%) AG 0(0.0000%) 0(0.0000%) AC 1(100.0000%) 0(0.0000%) TotalIndels 13 13 A. 3(23.0769%) 0(0.0000%) T. 0(0.0000%) 2(15.3846%) C. 5(38.4615%) 0(0.0000%) G. 2(15.3846%) 1(7.6923%) .A 0(0.0000%) 3(23.0769%) .T 2(15.3846%) 0(0.0000%) .C 0(0.0000%) 5(38.4615%) .G 1(7.6923%) 2(15.3846%) TotalGIndels 0 0 G. 0(0.0000%) 0(0.0000%) C. 0(0.0000%) 0(0.0000%) T. 0(0.0000%) 0(0.0000%) A. 0(0.0000%) 0(0.0000%) .C 0(0.0000%) 0(0.0000%) .G 0(0.0000%) 0(0.0000%) .A 0(0.0000%) 0(0.0000%) .T 0(0.0000%) 0(0.0000%)