Mercurial > repos > iuc > mummer_mummerplot

comparison mummerplot.xml @ 3:4fc0cb2ac8ae draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
author iuc
date Sat, 27 Nov 2021 09:58:54 +0000
parents c0cedc12fcc5
children fb43e8887350
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2:ebe3b0f84de9 3:4fc0cb2ac8ae
1 <tool id="mummer_mummerplot" name="Mummerplot" version="@MUMMER_VERSION@@WRAPPER_VERSION@"> 1 <tool id="mummer_mummerplot" name="Mummerplot" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@PROFILE@">
2 <description>Generate 2-D dotplot of aligned sequences</description> 2 <description>Generate 2-D dotplot of aligned sequences</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="bio_tools"/>
6 <expand macro="requirements"> 7 <expand macro="requirements">
7 <expand macro="gnuplot_requirement"/> 8 <expand macro="gnuplot_requirement"/>
8 </expand> 9 </expand>
9 <command detect_errors="exit_code"> 10 <command detect_errors="exit_code">
10 <![CDATA[ 11 <![CDATA[
73 </data> 74 </data>
74 <data name="output_png" format="png" from_work_dir="out.png" label="${tool.name} on ${on_string}: plot" /> 75 <data name="output_png" format="png" from_work_dir="out.png" label="${tool.name} on ${on_string}: plot" />
75 </outputs> 76 </outputs>
76 <tests> 77 <tests>
77 <test> 78 <test>
78 <param name="delta" ftype="txt" value="nucmer.txt" /> 79 <param name="delta" value="nucmer.txt" ftype="tabular" />
79 <param name="reference_sequence" ftype="fasta" value="human_aqp3.fasta" /> 80 <param name="reference_sequence" ftype="fasta" value="human_aqp3.fasta" />
80 <param name="query_sequence" ftype="fasta" value="mouse_aqp3.fasta" /> 81 <param name="query_sequence" ftype="fasta" value="mouse_aqp3.fasta" />
81 <param name="seq_input" value="no" /> 82 <param name="seq_input" value="no" />
82 <param name="extra_outs" value="all" /> 83 <param name="extra_outs" value="all" />
83 <output name="gnuplot" ftype="txt" compare="diff" value="gnuplot.txt" /> 84 <output name="gnuplot" ftype="txt" compare="diff" value="gnuplot.txt" />