comparison test-data/report.txt @ 0:e8c60daa41e0 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit 8133565adbfc012fa54b96449c2a18d044049107
author iuc
date Wed, 05 Dec 2018 02:36:43 -0500
parents
children 4fc0cb2ac8ae
comparison
equal deleted inserted replaced
-1:000000000000 0:e8c60daa41e0
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12 [REF] [QRY]
13 .A 0(0.00%) 0(0.00%)
14 .A 0(0.00%) 3(23.08%)
15 .C 0(0.00%) 0(0.00%)
16 .C 0(0.00%) 5(38.46%)
17 .G 0(0.00%) 0(0.00%)
18 .G 1(7.69%) 2(15.38%)
19 .T 0(0.00%) 0(0.00%)
20 .T 2(15.38%) 0(0.00%)
21 /Users/nickeener/GalaxyProjects/tools-iuc/tools/mummer4/test-data/human_aqp3.fasta /Users/nickeener/GalaxyProjects/tools-iuc/tools/mummer4/test-data/mouse_aqp3.fasta
22 1-to-1 2 2
23 A. 0(0.00%) 0(0.00%)
24 A. 3(23.08%) 0(0.00%)
25 AC 6(7.69%) 5(6.41%)
26 AC 1(100.00%) 0(0.00%)
27 AG 0(0.00%) 0(0.00%)
28 AG 2(2.56%) 5(6.41%)
29 AT 0(0.00%) 0(0.00%)
30 AT 2(2.56%) 2(2.56%)
31 AlignedBases 670(10.34%) 663(12.14%)
32 AlignedSeqs 1(100.00%) 1(100.00%)
33 AvgIdentity 86.48 86.48
34 AvgIdentity 86.48 86.48
35 AvgLength 335.00 331.50
36 AvgLength 335.00 331.50
37 Breakpoints 4 4
38 C. 0(0.00%) 0(0.00%)
39 C. 5(38.46%) 0(0.00%)
40 CA 0(0.00%) 1(100.00%)
41 CA 5(6.41%) 6(7.69%)
42 CG 0(0.00%) 0(0.00%)
43 CG 6(7.69%) 6(7.69%)
44 CT 0(0.00%) 0(0.00%)
45 CT 28(35.90%) 9(11.54%)
46 G. 0(0.00%) 0(0.00%)
47 G. 2(15.38%) 1(7.69%)
48 GA 0(0.00%) 0(0.00%)
49 GA 5(6.41%) 2(2.56%)
50 GC 0(0.00%) 0(0.00%)
51 GC 6(7.69%) 6(7.69%)
52 GT 0(0.00%) 0(0.00%)
53 GT 5(6.41%) 2(2.56%)
54 InsertionAvg 1936.67 1599.00
55 InsertionSum 5810 4797
56 Insertions 3 3
57 Inversions 0 0
58 M-to-M 2 2
59 NUCMER
60 Relocations 0 0
61 T. 0(0.00%) 0(0.00%)
62 T. 0(0.00%) 2(15.38%)
63 TA 0(0.00%) 0(0.00%)
64 TA 2(2.56%) 2(2.56%)
65 TC 0(0.00%) 0(0.00%)
66 TC 9(11.54%) 28(35.90%)
67 TG 0(0.00%) 0(0.00%)
68 TG 2(2.56%) 5(6.41%)
69 TandemIns 0 0
70 TandemInsAvg 0.00 0.00
71 TandemInsSum 0 0
72 TotalBases 6480 5460
73 TotalGIndels 0 0
74 TotalGSNPs 1 1
75 TotalIndels 13 13
76 TotalLength 670 663
77 TotalLength 670 663
78 TotalSNPs 78 78
79 TotalSeqs 1 1
80 Translocations 0 0
81 UnalignedBases 5810(89.66%) 4797(87.86%)
82 UnalignedSeqs 0(0.00%) 0(0.00%)
83 [Alignments]
84 [Bases]
85 [Feature Estimates]
86 [SNPs]
87 [Sequences]