Mercurial > repos > iuc > mummer_nucmer
comparison test-data/report.txt @ 0:a18fb4f826fc draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit 8133565adbfc012fa54b96449c2a18d044049107
| author | iuc |
|---|---|
| date | Wed, 05 Dec 2018 02:37:36 -0500 |
| parents | |
| children | e18267f90096 |
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| -1:000000000000 | 0:a18fb4f826fc |
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| 11 | |
| 12 [REF] [QRY] | |
| 13 .A 0(0.00%) 0(0.00%) | |
| 14 .A 0(0.00%) 3(23.08%) | |
| 15 .C 0(0.00%) 0(0.00%) | |
| 16 .C 0(0.00%) 5(38.46%) | |
| 17 .G 0(0.00%) 0(0.00%) | |
| 18 .G 1(7.69%) 2(15.38%) | |
| 19 .T 0(0.00%) 0(0.00%) | |
| 20 .T 2(15.38%) 0(0.00%) | |
| 21 /Users/nickeener/GalaxyProjects/tools-iuc/tools/mummer4/test-data/human_aqp3.fasta /Users/nickeener/GalaxyProjects/tools-iuc/tools/mummer4/test-data/mouse_aqp3.fasta | |
| 22 1-to-1 2 2 | |
| 23 A. 0(0.00%) 0(0.00%) | |
| 24 A. 3(23.08%) 0(0.00%) | |
| 25 AC 6(7.69%) 5(6.41%) | |
| 26 AC 1(100.00%) 0(0.00%) | |
| 27 AG 0(0.00%) 0(0.00%) | |
| 28 AG 2(2.56%) 5(6.41%) | |
| 29 AT 0(0.00%) 0(0.00%) | |
| 30 AT 2(2.56%) 2(2.56%) | |
| 31 AlignedBases 670(10.34%) 663(12.14%) | |
| 32 AlignedSeqs 1(100.00%) 1(100.00%) | |
| 33 AvgIdentity 86.48 86.48 | |
| 34 AvgIdentity 86.48 86.48 | |
| 35 AvgLength 335.00 331.50 | |
| 36 AvgLength 335.00 331.50 | |
| 37 Breakpoints 4 4 | |
| 38 C. 0(0.00%) 0(0.00%) | |
| 39 C. 5(38.46%) 0(0.00%) | |
| 40 CA 0(0.00%) 1(100.00%) | |
| 41 CA 5(6.41%) 6(7.69%) | |
| 42 CG 0(0.00%) 0(0.00%) | |
| 43 CG 6(7.69%) 6(7.69%) | |
| 44 CT 0(0.00%) 0(0.00%) | |
| 45 CT 28(35.90%) 9(11.54%) | |
| 46 G. 0(0.00%) 0(0.00%) | |
| 47 G. 2(15.38%) 1(7.69%) | |
| 48 GA 0(0.00%) 0(0.00%) | |
| 49 GA 5(6.41%) 2(2.56%) | |
| 50 GC 0(0.00%) 0(0.00%) | |
| 51 GC 6(7.69%) 6(7.69%) | |
| 52 GT 0(0.00%) 0(0.00%) | |
| 53 GT 5(6.41%) 2(2.56%) | |
| 54 InsertionAvg 1936.67 1599.00 | |
| 55 InsertionSum 5810 4797 | |
| 56 Insertions 3 3 | |
| 57 Inversions 0 0 | |
| 58 M-to-M 2 2 | |
| 59 NUCMER | |
| 60 Relocations 0 0 | |
| 61 T. 0(0.00%) 0(0.00%) | |
| 62 T. 0(0.00%) 2(15.38%) | |
| 63 TA 0(0.00%) 0(0.00%) | |
| 64 TA 2(2.56%) 2(2.56%) | |
| 65 TC 0(0.00%) 0(0.00%) | |
| 66 TC 9(11.54%) 28(35.90%) | |
| 67 TG 0(0.00%) 0(0.00%) | |
| 68 TG 2(2.56%) 5(6.41%) | |
| 69 TandemIns 0 0 | |
| 70 TandemInsAvg 0.00 0.00 | |
| 71 TandemInsSum 0 0 | |
| 72 TotalBases 6480 5460 | |
| 73 TotalGIndels 0 0 | |
| 74 TotalGSNPs 1 1 | |
| 75 TotalIndels 13 13 | |
| 76 TotalLength 670 663 | |
| 77 TotalLength 670 663 | |
| 78 TotalSNPs 78 78 | |
| 79 TotalSeqs 1 1 | |
| 80 Translocations 0 0 | |
| 81 UnalignedBases 5810(89.66%) 4797(87.86%) | |
| 82 UnalignedSeqs 0(0.00%) 0(0.00%) | |
| 83 [Alignments] | |
| 84 [Bases] | |
| 85 [Feature Estimates] | |
| 86 [SNPs] | |
| 87 [Sequences] |