Mercurial > repos > iuc > mummer_nucmer
view test-data/report.txt @ 1:5b0b49b5421c draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit 96608e94742d17cb73d57201099ff5f5abbef276"
| author | iuc |
|---|---|
| date | Fri, 24 Jan 2020 15:56:52 -0500 |
| parents | a18fb4f826fc |
| children | e18267f90096 |
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[REF] [QRY] .A 0(0.00%) 0(0.00%) .A 0(0.00%) 3(23.08%) .C 0(0.00%) 0(0.00%) .C 0(0.00%) 5(38.46%) .G 0(0.00%) 0(0.00%) .G 1(7.69%) 2(15.38%) .T 0(0.00%) 0(0.00%) .T 2(15.38%) 0(0.00%) /Users/nickeener/GalaxyProjects/tools-iuc/tools/mummer4/test-data/human_aqp3.fasta /Users/nickeener/GalaxyProjects/tools-iuc/tools/mummer4/test-data/mouse_aqp3.fasta 1-to-1 2 2 A. 0(0.00%) 0(0.00%) A. 3(23.08%) 0(0.00%) AC 6(7.69%) 5(6.41%) AC 1(100.00%) 0(0.00%) AG 0(0.00%) 0(0.00%) AG 2(2.56%) 5(6.41%) AT 0(0.00%) 0(0.00%) AT 2(2.56%) 2(2.56%) AlignedBases 670(10.34%) 663(12.14%) AlignedSeqs 1(100.00%) 1(100.00%) AvgIdentity 86.48 86.48 AvgIdentity 86.48 86.48 AvgLength 335.00 331.50 AvgLength 335.00 331.50 Breakpoints 4 4 C. 0(0.00%) 0(0.00%) C. 5(38.46%) 0(0.00%) CA 0(0.00%) 1(100.00%) CA 5(6.41%) 6(7.69%) CG 0(0.00%) 0(0.00%) CG 6(7.69%) 6(7.69%) CT 0(0.00%) 0(0.00%) CT 28(35.90%) 9(11.54%) G. 0(0.00%) 0(0.00%) G. 2(15.38%) 1(7.69%) GA 0(0.00%) 0(0.00%) GA 5(6.41%) 2(2.56%) GC 0(0.00%) 0(0.00%) GC 6(7.69%) 6(7.69%) GT 0(0.00%) 0(0.00%) GT 5(6.41%) 2(2.56%) InsertionAvg 1936.67 1599.00 InsertionSum 5810 4797 Insertions 3 3 Inversions 0 0 M-to-M 2 2 NUCMER Relocations 0 0 T. 0(0.00%) 0(0.00%) T. 0(0.00%) 2(15.38%) TA 0(0.00%) 0(0.00%) TA 2(2.56%) 2(2.56%) TC 0(0.00%) 0(0.00%) TC 9(11.54%) 28(35.90%) TG 0(0.00%) 0(0.00%) TG 2(2.56%) 5(6.41%) TandemIns 0 0 TandemInsAvg 0.00 0.00 TandemInsSum 0 0 TotalBases 6480 5460 TotalGIndels 0 0 TotalGSNPs 1 1 TotalIndels 13 13 TotalLength 670 663 TotalLength 670 663 TotalSNPs 78 78 TotalSeqs 1 1 Translocations 0 0 UnalignedBases 5810(89.66%) 4797(87.86%) UnalignedSeqs 0(0.00%) 0(0.00%) [Alignments] [Bases] [Feature Estimates] [SNPs] [Sequences]