view test-data/report.txt @ 0:a18fb4f826fc draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit 8133565adbfc012fa54b96449c2a18d044049107
author iuc
date Wed, 05 Dec 2018 02:37:36 -0500
parents
children e18267f90096
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                               [REF]                [QRY]
.A                          0(0.00%)             0(0.00%)
.A                          0(0.00%)            3(23.08%)
.C                          0(0.00%)             0(0.00%)
.C                          0(0.00%)            5(38.46%)
.G                          0(0.00%)             0(0.00%)
.G                          1(7.69%)            2(15.38%)
.T                          0(0.00%)             0(0.00%)
.T                         2(15.38%)             0(0.00%)
/Users/nickeener/GalaxyProjects/tools-iuc/tools/mummer4/test-data/human_aqp3.fasta /Users/nickeener/GalaxyProjects/tools-iuc/tools/mummer4/test-data/mouse_aqp3.fasta
1-to-1                             2                    2
A.                          0(0.00%)             0(0.00%)
A.                         3(23.08%)             0(0.00%)
AC                          6(7.69%)             5(6.41%)
AC                        1(100.00%)             0(0.00%)
AG                          0(0.00%)             0(0.00%)
AG                          2(2.56%)             5(6.41%)
AT                          0(0.00%)             0(0.00%)
AT                          2(2.56%)             2(2.56%)
AlignedBases             670(10.34%)          663(12.14%)
AlignedSeqs               1(100.00%)           1(100.00%)
AvgIdentity                    86.48                86.48
AvgIdentity                    86.48                86.48
AvgLength                     335.00               331.50
AvgLength                     335.00               331.50
Breakpoints                        4                    4
C.                          0(0.00%)             0(0.00%)
C.                         5(38.46%)             0(0.00%)
CA                          0(0.00%)           1(100.00%)
CA                          5(6.41%)             6(7.69%)
CG                          0(0.00%)             0(0.00%)
CG                          6(7.69%)             6(7.69%)
CT                          0(0.00%)             0(0.00%)
CT                        28(35.90%)            9(11.54%)
G.                          0(0.00%)             0(0.00%)
G.                         2(15.38%)             1(7.69%)
GA                          0(0.00%)             0(0.00%)
GA                          5(6.41%)             2(2.56%)
GC                          0(0.00%)             0(0.00%)
GC                          6(7.69%)             6(7.69%)
GT                          0(0.00%)             0(0.00%)
GT                          5(6.41%)             2(2.56%)
InsertionAvg                 1936.67              1599.00
InsertionSum                    5810                 4797
Insertions                         3                    3
Inversions                         0                    0
M-to-M                             2                    2
NUCMER
Relocations                        0                    0
T.                          0(0.00%)             0(0.00%)
T.                          0(0.00%)            2(15.38%)
TA                          0(0.00%)             0(0.00%)
TA                          2(2.56%)             2(2.56%)
TC                          0(0.00%)             0(0.00%)
TC                         9(11.54%)           28(35.90%)
TG                          0(0.00%)             0(0.00%)
TG                          2(2.56%)             5(6.41%)
TandemIns                          0                    0
TandemInsAvg                    0.00                 0.00
TandemInsSum                       0                    0
TotalBases                      6480                 5460
TotalGIndels                       0                    0
TotalGSNPs                         1                    1
TotalIndels                       13                   13
TotalLength                      670                  663
TotalLength                      670                  663
TotalSNPs                         78                   78
TotalSeqs                          1                    1
Translocations                     0                    0
UnalignedBases          5810(89.66%)         4797(87.86%)
UnalignedSeqs               0(0.00%)             0(0.00%)
[Alignments]
[Bases]
[Feature Estimates]
[SNPs]
[Sequences]