Mercurial > repos > iuc > mummer_show_coords

comparison test-data/report.txt @ 3:b4124df98b26 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mummer4 commit bacb32814054404587451948b3a6682cf0d1a33a"
author iuc
date Sat, 27 Nov 2021 10:00:07 +0000
parents f8734af48332
children cf3c9489c088
comparison
equal deleted inserted replaced
2:959c1f8dae95 3:b4124df98b26
1 1 /tmp/tmpm1aw7z9b/files/6/1/9/dataset_619c747c-cdb5-4d85-adda-e0ec5f7fa2fe.dat /tmp/tmpm1aw7z9b/files/f/e/c/dataset_fec4ecfe-55bb-4ff9-86e1-292952d00dd1.dat
2 2 NUCMER
3
4
5
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9
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11 3
12 [REF] [QRY] 4 [REF] [QRY]
13 .A 0(0.00%) 0(0.00%) 5 [Sequences]
14 .A 0(0.00%) 3(23.08%) 6 TotalSeqs 1 1
15 .C 0(0.00%) 0(0.00%) 7 AlignedSeqs 1(100.0000%) 1(100.0000%)
16 .C 0(0.00%) 5(38.46%) 8 UnalignedSeqs 0(0.0000%) 0(0.0000%)
17 .G 0(0.00%) 0(0.00%) 9
18 .G 1(7.69%) 2(15.38%) 10 [Bases]
19 .T 0(0.00%) 0(0.00%) 11 TotalBases 6480 5460
20 .T 2(15.38%) 0(0.00%) 12 AlignedBases 670(10.3395%) 663(12.1429%)
21 /Users/nickeener/GalaxyProjects/tools-iuc/tools/mummer4/test-data/human_aqp3.fasta /Users/nickeener/GalaxyProjects/tools-iuc/tools/mummer4/test-data/mouse_aqp3.fasta 13 UnalignedBases 5810(89.6605%) 4797(87.8571%)
14
15 [Alignments]
22 1-to-1 2 2 16 1-to-1 2 2
23 A. 0(0.00%) 0(0.00%) 17 TotalLength 670 663
24 A. 3(23.08%) 0(0.00%) 18 AvgLength 335.0000 331.5000
25 AC 6(7.69%) 5(6.41%) 19 AvgIdentity 86.4791 86.4791
26 AC 1(100.00%) 0(0.00%) 20
27 AG 0(0.00%) 0(0.00%) 21 M-to-M 2 2
28 AG 2(2.56%) 5(6.41%) 22 TotalLength 670 663
29 AT 0(0.00%) 0(0.00%) 23 AvgLength 335.0000 331.5000
30 AT 2(2.56%) 2(2.56%) 24 AvgIdentity 86.4791 86.4791
31 AlignedBases 670(10.34%) 663(12.14%) 25
32 AlignedSeqs 1(100.00%) 1(100.00%) 26 [Feature Estimates]
33 AvgIdentity 86.48 86.48
34 AvgIdentity 86.48 86.48
35 AvgLength 335.00 331.50
36 AvgLength 335.00 331.50
37 Breakpoints 4 4 27 Breakpoints 4 4
38 C. 0(0.00%) 0(0.00%) 28 Relocations 0 0
39 C. 5(38.46%) 0(0.00%) 29 Translocations 0 0
40 CA 0(0.00%) 1(100.00%) 30 Inversions 0 0
41 CA 5(6.41%) 6(7.69%) 31
42 CG 0(0.00%) 0(0.00%) 32 Insertions 3 3
43 CG 6(7.69%) 6(7.69%)
44 CT 0(0.00%) 0(0.00%)
45 CT 28(35.90%) 9(11.54%)
46 G. 0(0.00%) 0(0.00%)
47 G. 2(15.38%) 1(7.69%)
48 GA 0(0.00%) 0(0.00%)
49 GA 5(6.41%) 2(2.56%)
50 GC 0(0.00%) 0(0.00%)
51 GC 6(7.69%) 6(7.69%)
52 GT 0(0.00%) 0(0.00%)
53 GT 5(6.41%) 2(2.56%)
54 InsertionAvg 1936.67 1599.00
55 InsertionSum 5810 4797 33 InsertionSum 5810 4797
56 Insertions 3 3 34 InsertionAvg 1936.6667 1599.0000
57 Inversions 0 0 35
58 M-to-M 2 2
59 NUCMER
60 Relocations 0 0
61 T. 0(0.00%) 0(0.00%)
62 T. 0(0.00%) 2(15.38%)
63 TA 0(0.00%) 0(0.00%)
64 TA 2(2.56%) 2(2.56%)
65 TC 0(0.00%) 0(0.00%)
66 TC 9(11.54%) 28(35.90%)
67 TG 0(0.00%) 0(0.00%)
68 TG 2(2.56%) 5(6.41%)
69 TandemIns 0 0 36 TandemIns 0 0
70 TandemInsAvg 0.00 0.00
71 TandemInsSum 0 0 37 TandemInsSum 0 0
72 TotalBases 6480 5460 38 TandemInsAvg 0.0000 0.0000
39
40 [SNPs]
41 TotalSNPs 78 78
42 TG 2(2.5641%) 5(6.4103%)
43 TC 9(11.5385%) 28(35.8974%)
44 TA 2(2.5641%) 2(2.5641%)
45 GC 6(7.6923%) 6(7.6923%)
46 GA 5(6.4103%) 2(2.5641%)
47 GT 5(6.4103%) 2(2.5641%)
48 CT 28(35.8974%) 9(11.5385%)
49 CA 5(6.4103%) 6(7.6923%)
50 CG 6(7.6923%) 6(7.6923%)
51 AT 2(2.5641%) 2(2.5641%)
52 AG 2(2.5641%) 5(6.4103%)
53 AC 6(7.6923%) 5(6.4103%)
54
55 TotalGSNPs 1 1
56 TA 0(0.0000%) 0(0.0000%)
57 TG 0(0.0000%) 0(0.0000%)
58 TC 0(0.0000%) 0(0.0000%)
59 AG 0(0.0000%) 0(0.0000%)
60 AC 1(100.0000%) 0(0.0000%)
61 AT 0(0.0000%) 0(0.0000%)
62 GC 0(0.0000%) 0(0.0000%)
63 GA 0(0.0000%) 0(0.0000%)
64 GT 0(0.0000%) 0(0.0000%)
65 CT 0(0.0000%) 0(0.0000%)
66 CG 0(0.0000%) 0(0.0000%)
67 CA 0(0.0000%) 1(100.0000%)
68
69 TotalIndels 13 13
70 T. 0(0.0000%) 2(15.3846%)
71 G. 2(15.3846%) 1(7.6923%)
72 C. 5(38.4615%) 0(0.0000%)
73 A. 3(23.0769%) 0(0.0000%)
74 .G 1(7.6923%) 2(15.3846%)
75 .C 0(0.0000%) 5(38.4615%)
76 .A 0(0.0000%) 3(23.0769%)
77 .T 2(15.3846%) 0(0.0000%)
78
73 TotalGIndels 0 0 79 TotalGIndels 0 0
74 TotalGSNPs 1 1 80 T. 0(0.0000%) 0(0.0000%)
75 TotalIndels 13 13 81 A. 0(0.0000%) 0(0.0000%)
76 TotalLength 670 663 82 G. 0(0.0000%) 0(0.0000%)
77 TotalLength 670 663 83 C. 0(0.0000%) 0(0.0000%)
78 TotalSNPs 78 78 84 .A 0(0.0000%) 0(0.0000%)
79 TotalSeqs 1 1 85 .C 0(0.0000%) 0(0.0000%)
80 Translocations 0 0 86 .G 0(0.0000%) 0(0.0000%)
81 UnalignedBases 5810(89.66%) 4797(87.86%) 87 .T 0(0.0000%) 0(0.0000%)
82 UnalignedSeqs 0(0.00%) 0(0.00%)
83 [Alignments]
84 [Bases]
85 [Feature Estimates]
86 [SNPs]
87 [Sequences]