Mercurial > repos > iuc > nanocompore_db

diff NanocomporeDB_process.py @ 1:2af554112418 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nanocompore commit a57b5b935a80db12a0ed867b4219453a2854dd32"
author iuc
date Wed, 17 Jun 2020 13:28:53 -0400
parents b6eeea872fd2
children ca9e70c0fef8
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line diff
--- a/NanocomporeDB_process.py	Mon Jun 08 14:41:41 2020 -0400
+++ b/NanocomporeDB_process.py	Wed Jun 17 13:28:53 2020 -0400
@@ -38,7 +38,7 @@
     parser.add_argument('--pvalue-types', type=str,
                         default='GMM_logit_pvalue,KS_dwell_pvalue,KS_intensity_pvalue',
                         help='path to the annotations')
-    parser.add_argument('--bedgraph', default=False,
+    parser.add_argument('--bedgraph', action="store_true",
                         help='write output in BEDGRAPH format instead of BED')
     parser.add_argument('--pvalue-threshold', default=1.0,
                         help='Maximum reported p-value.')