Mercurial > repos > iuc > nanoplot

diff test-data/NanoStats.txt @ 5:a3c4fe6f49ab draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nanoplot/ commit 52e462654477b6acf9a087063d3ddb19f66f8b38
author iuc
date Thu, 16 Jun 2022 20:08:15 +0000
parents acd337269171
children 7b379e98b9a9
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line diff
--- a/test-data/NanoStats.txt	Sun Jan 19 19:03:02 2020 -0500
+++ b/test-data/NanoStats.txt	Thu Jun 16 20:08:15 2022 +0000
@@ -1,6 +1,25 @@
-General summary:        
-Mean read length:           2,564.9
-Median read length:         1,910.0
-Number of reads:                9.0
-Read length N50:            4,275.0
-Total bases:               23,084.0
+Metrics	dataset
+number_of_reads	371
+number_of_bases	8611871.0
+median_read_length	9390.0
+mean_read_length	23212.6
+read_length_stdev	42729.8
+n50	60395.0
+active_channels	169
+mean_qual	10.1
+median_qual	10.3
+longest_read_(with_Q):1	393431 (10.6)
+longest_read_(with_Q):2	341725 (11.8)
+longest_read_(with_Q):3	320662 (8.0)
+longest_read_(with_Q):4	226843 (9.1)
+longest_read_(with_Q):5	221901 (10.0)
+highest_Q_read_(with_length):1	13.3 (6333)
+highest_Q_read_(with_length):2	13.1 (5448)
+highest_Q_read_(with_length):3	12.9 (27834)
+highest_Q_read_(with_length):4	12.8 (20351)
+highest_Q_read_(with_length):5	12.8 (97730)
+Reads >Q5:	371 (100.0%) 8.6Mb
+Reads >Q7:	371 (100.0%) 8.6Mb
+Reads >Q10:	207 (55.8%) 4.7Mb
+Reads >Q12:	49 (13.2%) 0.9Mb
+Reads >Q15:	0 (0.0%) 0.0Mb