Mercurial > repos > iuc > nanoplot
diff test-data/NanoStats.txt @ 0:db1eeffba23e draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nanoplot/ commit ad3c2e459ae53ab61df3d967d755fd0b42149328
| author | iuc |
|---|---|
| date | Fri, 28 Sep 2018 19:30:29 -0400 |
| parents | |
| children | acd337269171 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/NanoStats.txt Fri Sep 28 19:30:29 2018 -0400 @@ -0,0 +1,27 @@ +General summary: +Active channels: 169 +Mean read length: 23212.6 +Mean read quality: 10.1 +Median read length: 9390.0 +Median read quality: 10.3 +Number of reads: 371 +Read length N50: 60395 +Total bases: 8611871 +Number, percentage and megabases of reads above quality cutoffs +>Q5: 371 (100.0%) 8.6Mb +>Q7: 371 (100.0%) 8.6Mb +>Q10: 207 (55.8%) 4.7Mb +>Q12: 49 (13.2%) 0.9Mb +>Q15: 0 (0.0%) 0.0Mb +Top 5 highest mean basecall quality scores and their read lengths +1: 13.3 (6333) +2: 13.1 (5448) +3: 12.9 (27834) +4: 12.8 (20351) +5: 12.8 (97730) +Top 5 longest reads and their mean basecall quality score +1: 393431 (10.6) +2: 341725 (11.8) +3: 320662 (8.0) +4: 226843 (9.1) +5: 221901 (10.0)