view test-data/NanoStats_post_filtering.txt @ 2:acd337269171 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/nanoplot/ commit fae386db359dd61fd5e4e2e808413ae478b279ee
author iuc
date Thu, 20 Jun 2019 10:18:48 -0400
parents db1eeffba23e
children a3c4fe6f49ab
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General summary:        
Active channels:                169.0
Mean read length:            23,212.6
Mean read quality:               10.1
Median read length:           9,390.0
Median read quality:             10.3
Number of reads:                371.0
Read length N50:             60,395.0
Total bases:              8,611,871.0
Number, percentage and megabases of reads above quality cutoffs
>Q5:	371 (100.0%) 8.6Mb
>Q7:	371 (100.0%) 8.6Mb
>Q10:	207 (55.8%) 4.7Mb
>Q12:	49 (13.2%) 0.9Mb
>Q15:	0 (0.0%) 0.0Mb
Top 5 highest mean basecall quality scores and their read lengths
1:	13.3 (6333)
2:	13.1 (5448)
3:	12.9 (27834)
4:	12.8 (20351)
5:	12.8 (97730)
Top 5 longest reads and their mean basecall quality score
1:	393431 (10.6)
2:	341725 (11.8)
3:	320662 (8.0)
4:	226843 (9.1)
5:	221901 (10.0)