Mercurial > repos > iuc > ncbi_datasets
comparison datasets_gene.xml @ 15:198c75abbf55 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_datasets commit 1b6341a0430757c07760af2115ae4d5e70f5903a
author | iuc |
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date | Mon, 04 Mar 2024 17:27:59 +0000 |
parents | 75acf92c8fd5 |
children | a6a475ed58cb |
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14:75acf92c8fd5 | 15:198c75abbf55 |
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389 <has_n_lines min="30"/> | 389 <has_n_lines min="30"/> |
390 <has_n_columns n="8"/> | 390 <has_n_columns n="8"/> |
391 </assert_contents> | 391 </assert_contents> |
392 </output> | 392 </output> |
393 </test> | 393 </test> |
394 | |
395 <!-- 7: datasets download gene accession NP_000483.3 --> | 394 <!-- 7: datasets download gene accession NP_000483.3 --> |
396 <test expect_num_outputs="1"> | 395 <test expect_num_outputs="1"> |
397 <conditional name="query|subcommand"> | 396 <conditional name="query|subcommand"> |
398 <param name="download_by" value="accession"/> | 397 <param name="download_by" value="accession"/> |
399 <conditional name="text_or_file"> | 398 <conditional name="text_or_file"> |
436 <has_n_columns n="8"/> | 435 <has_n_columns n="8"/> |
437 </assert_contents> | 436 </assert_contents> |
438 </output> | 437 </output> |
439 </test> | 438 </test> |
440 | 439 |
441 <!-- 9: datasets download gene accession WP_004675351.1 + include_flanks_bp --> | 440 <!-- 9: datasets download gene accession WP_004675351.1 + include_flanks_bp |
442 <test expect_num_outputs="3"> | 441 test broken at the moment https://github.com/ncbi/datasets/issues/328 |
442 --> | |
443 <test expect_failure="true"> <!-- expect_num_outputs="3" --> | |
443 <conditional name="query|subcommand"> | 444 <conditional name="query|subcommand"> |
444 <param name="download_by" value="accession"/> | 445 <param name="download_by" value="accession"/> |
445 <conditional name="text_or_file"> | 446 <conditional name="text_or_file"> |
446 <param name="text_or_file" value="text"/> | 447 <param name="text_or_file" value="text"/> |
447 <param name="accession" value="WP_004675351.1"/> | 448 <param name="accession" value="WP_004675351.1"/> |
452 <conditional name="kingdom_cond"> | 453 <conditional name="kingdom_cond"> |
453 <param name="kingdom_sel" value="prok-gene"/> | 454 <param name="kingdom_sel" value="prok-gene"/> |
454 <param name="include" value="gene,protein"/> | 455 <param name="include" value="gene,protein"/> |
455 </conditional> | 456 </conditional> |
456 </section> | 457 </section> |
457 <output name="gene_data_report"> | 458 <!-- <output name="gene_data_report"> |
458 <assert_contents> | 459 <assert_contents> |
459 <has_text text="glcE"/> | 460 <has_text text="glcE"/> |
460 <has_n_lines n="2"/> | 461 <has_n_lines n="2"/> |
461 <has_n_columns n="7"/> | 462 <has_n_columns n="7"/> |
462 </assert_contents> | 463 </assert_contents> |
468 </output> | 469 </output> |
469 <output name="protein_fasta"> | 470 <output name="protein_fasta"> |
470 <assert_contents> | 471 <assert_contents> |
471 <has_text text=">"/> | 472 <has_text text=">"/> |
472 </assert_contents> | 473 </assert_contents> |
473 </output> | 474 </output> --> |
474 <assert_command> | 475 <assert_command> |
475 <has_text text="include-flanks-bp 100"/> | 476 <has_text text="include-flanks-bp 100"/> |
476 </assert_command> | 477 </assert_command> |
477 </test> | 478 </test> |
478 | 479 |