Mercurial > repos > iuc > ncbi_datasets

comparison macros.xml @ 5:6c829a430475 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_datasets commit a58a3198ea1b60b6aa9567c6c65f00f8361794f6"
author iuc
date Wed, 04 May 2022 13:15:43 +0000
parents c47a0a93ffd2
children 5a2656cc84cb
comparison
equal deleted inserted replaced
4:c47a0a93ffd2 5:6c829a430475
1 <macros> 1 <macros>
2 <token name="@TOOL_VERSION@">13.4.0</token> 2 <token name="@TOOL_VERSION@">13.14.0</token>
3 <token name="@PROFILE@">20.01</token> 3 <token name="@PROFILE@">20.01</token>
4 <token name="@LICENSE@">MIT</token> 4 <token name="@LICENSE@">MIT</token>
5 <token name="@PROFILE_AND_LICENSE@">profile="@PROFILE@" license="@LICENSE@"</token> 5 <token name="@PROFILE_AND_LICENSE@">profile="@PROFILE@" license="@LICENSE@"</token>
6 <token name="@SETUP_CERTIFICATES@"><![CDATA[ 6 <token name="@SETUP_CERTIFICATES@"><![CDATA[
7 ## If running in container use certificate from ca-certificates instead of outdated / missing container certificates 7 ## If running in container use certificate from ca-certificates instead of outdated / missing container certificates
66 </xml> 66 </xml>
67 <xml name="includes_genome"> 67 <xml name="includes_genome">
68 <expand macro="include" include_what="gbff" include_label="Include GenBank flat file sequence and annotation, if available"/> 68 <expand macro="include" include_what="gbff" include_label="Include GenBank flat file sequence and annotation, if available"/>
69 <expand macro="include" include_what="gtf" include_label="Include gtf annotation file, if available"/> 69 <expand macro="include" include_what="gtf" include_label="Include gtf annotation file, if available"/>
70 </xml> 70 </xml>
71 <xml name="exclude" token_exclude_what="gff3" token_exclude_label="Exclude gff3 annotation file"> 71 <xml name="exclude" token_exclude_what="gff3" token_exclude_label="Exclude gff3 annotation file" token_checked="false">
72 <param argument="--exclude-@EXCLUDE_WHAT@" type="boolean" truevalue="--exclude-@EXCLUDE_WHAT@" falsevalue="" label="@EXCLUDE_LABEL@" /> 72 <param argument="--exclude-@EXCLUDE_WHAT@" type="boolean" truevalue="--exclude-@EXCLUDE_WHAT@" falsevalue="" label="@EXCLUDE_LABEL@" checked="@CHECKED@"/>
73 </xml>
74 <xml name="anti-exclude" token_exclude_what="gff3" token_exclude_label="Include gff3 annotation file" token_checked="false">
75 <param argument="--exclude-@EXCLUDE_WHAT@" type="boolean" falsevalue="--exclude-@EXCLUDE_WHAT@" truevalue="" label="@EXCLUDE_LABEL@" checked="@CHECKED@"/>
76 </xml> 73 </xml>
77 <xml name="excludes_genome"> 74 <xml name="excludes_genome">
78 <expand macro="anti-exclude" exclude_what="seq" exclude_label="Include genomic sequence file" checked="true"/> 75 <expand macro="exclude" exclude_what="seq" exclude_label="Exclude genomic sequence file"/>
79 <expand macro="anti-exclude" exclude_what="gff3" exclude_label="Include gff3 annotation file"/> 76 <expand macro="exclude" exclude_what="gff3" exclude_label="Exclude gff3 annotation file"/>
80 <expand macro="anti-exclude" exclude_what="genomic-cds" exclude_label="Include cds from genomic sequence file"/> 77 <expand macro="exclude" exclude_what="genomic-cds" exclude_label="Exclude cds from genomic sequence file"/>
81 <expand macro="anti-exclude" exclude_what="protein" exclude_label="Include protein sequence file"/> 78 <expand macro="exclude" exclude_what="protein" exclude_label="Exclude protein sequence file"/>
82 <expand macro="anti-exclude" exclude_what="rna" exclude_label="Include transcript sequence file"/> 79 <expand macro="exclude" exclude_what="rna" exclude_label="Exclude transcript sequence file"/>
83 </xml> 80 </xml>
84 <xml name="excludes_gene"> 81 <xml name="excludes_gene">
85 <expand macro="exclude" exclude_what="gene" exclude_label="Exclude gene sequence file"/> 82 <expand macro="exclude" exclude_what="gene" exclude_label="Exclude gene sequence file"/>
86 <expand macro="exclude" exclude_what="protein" exclude_label="Exclude protein sequence file"/> 83 <expand macro="exclude" exclude_what="protein" exclude_label="Exclude protein sequence file"/>
87 <expand macro="exclude" exclude_what="rna" exclude_label="Exclude transcript sequence file"/> 84 <expand macro="exclude" exclude_what="rna" exclude_label="Exclude transcript sequence file"/>