Mercurial > repos > iuc > ncbi_datasets

diff datasets_gene.xml @ 12:d78faac2c6ef draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_datasets commit affffdbe7237a2c0ba5793c0e7dd11cebb8413a9
author iuc
date Sat, 03 Dec 2022 13:29:32 +0000
parents ac24fff14f23
children 1e188c9610c3
line wrap: on
line diff
--- a/datasets_gene.xml	Fri Dec 02 10:52:48 2022 +0000
+++ b/datasets_gene.xml	Sat Dec 03 13:29:32 2022 +0000
@@ -1,9 +1,11 @@
 <tool id="datasets_download_gene" name="NCBI Datasets Gene" profile="@PROFILE@" license="@LICENSE@" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@">
     <description>download gene sequences and metadata</description>
+    <expand macro="bio_tools"/>
     <macros>
         <import>macros.xml</import>
     </macros>
     <expand macro="requirements"></expand>
+    <expand macro="version_command"/>
     <command><![CDATA[
 #import re
 @SETUP_CERTIFICATES@
@@ -286,7 +288,7 @@
                 <assert_contents>
                     <has_text text="baboon"/>
                     <has_text text="glyceraldehyde-3-phosphate dehydrogenase"/>
-                    <has_n_lines n="31"/>
+                    <has_n_lines min="30"/>
                     <has_n_columns n="8"/>
                 </assert_contents>
             </output>
@@ -350,7 +352,7 @@
                 <assert_contents>
                     <has_text text="house mouse"/>
                     <has_text text="XR_004936704.1"/>
-                    <has_n_lines n="137"/>
+                    <has_n_lines min="130"/>
                     <has_n_columns n="38"/>
                 </assert_contents>
             </output>
@@ -384,7 +386,7 @@
                 <assert_contents>
                     <has_text text="rat"/>
                     <has_text text="Brca1"/>
-                    <has_n_lines n="38"/>
+                    <has_n_lines min="30"/>
                     <has_n_columns n="8"/>
                 </assert_contents>
             </output>
@@ -430,7 +432,7 @@
             <output name="gene_data_report">
                 <assert_contents>
                     <has_text text="human"/>
-                    <has_n_lines n="823"/>
+                    <has_n_lines min="800"/>
                     <has_n_columns n="8"/>
                 </assert_contents>
             </output>
@@ -488,7 +490,7 @@
             <output name="gene_data_report">
                 <assert_contents>
                     <has_text text="human"/>
-                    <has_n_lines n="72533"/>
+                    <has_n_lines min="72000"/>
                     <has_n_columns n="8"/>
                 </assert_contents>
             </output>
@@ -513,7 +515,7 @@
             <output name="gene_data_report">
                 <assert_contents>
                     <has_text text="human"/>
-                    <has_n_lines n="72533"/>
+                    <has_n_lines min="72000"/>
                     <has_n_columns n="8"/>
                 </assert_contents>
             </output>