Mercurial > repos > iuc > ncbi_datasets

diff datasets_genome.xml @ 17:da8260eba74b draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_datasets commit 1c7abf3293422fb432b5acd2ef178e7536d65f0b
author iuc
date Fri, 21 Feb 2025 18:44:07 +0000
parents a6a475ed58cb
children
line wrap: on
line diff
--- a/datasets_genome.xml	Fri Jun 07 14:19:58 2024 +0000
+++ b/datasets_genome.xml	Fri Feb 21 18:44:07 2025 +0000
@@ -55,7 +55,7 @@
 ## unzip and rehydrate if any data is to be downloaded (include is not None)
 #if $file_choices.include
     ## unzip
-    && 7z x -y ncbi_dataset.zip > 7z.log
+    && unzip ncbi_dataset.zip
 
     ## rehydrate
     && datasets rehydrate
@@ -463,8 +463,8 @@
             </section>
             <output_collection name="sequence_report" type="list" count="2"/>
             <output_collection name="genome_fasta" type="list:list" count="2">
-                <expand macro="genome_fasta_assert" el1="GCF_000002945.1" el2="GCF_000002945.1_ASM294v2" expression=">NC_[0-9]+\.[0-9]+ Schizosaccharomyces pombe (mitochondrion|chromosome .*), complete (sequence|genome)" expression_n="4"/>
-                <expand macro="genome_fasta_assert" el1="GCF_000146045.2" el2="GCF_000146045.2_R64" expression=">NC_[0-9]+\.[0-9]+ Saccharomyces cerevisiae S288[Cc] (mitochondrion|chromosome .*), complete (sequence|genome)" expression_n="17"/>
+                <expand macro="genome_fasta_assert" el1="GCF_000002945.2" el2="GCF_000002945.2_ASM294v3" expression=">NC_[0-9]+\.[0-9]+ Schizosaccharomyces pombe.*" expression_n="4"/>
+                <expand macro="genome_fasta_assert" el1="GCF_000146045.2" el2="GCF_000146045.2_R64" expression=">NC_[0-9]+\.[0-9]+ Saccharomyces cerevisiae S288[Cc].*" expression_n="17"/>
             </output_collection>
         </test>
         <!-- tax_exact_match should filter out strains