Mercurial > repos > iuc > ncbi_datasets

changeset 13:1e188c9610c3 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_datasets commit d3fa7b70aa028f527a1dbbb210c172c637dfd4d9
author iuc
date Fri, 09 Dec 2022 15:11:16 +0000
parents d78faac2c6ef
children 75acf92c8fd5
files datasets_gene.xml datasets_genome.xml macros.xml
diffstat 3 files changed, 16 insertions(+), 6 deletions(-) [+]
line wrap: on
line diff
--- a/datasets_gene.xml	Sat Dec 03 13:29:32 2022 +0000
+++ b/datasets_gene.xml	Fri Dec 09 15:11:16 2022 +0000
@@ -1,9 +1,9 @@
 <tool id="datasets_download_gene" name="NCBI Datasets Gene" profile="@PROFILE@" license="@LICENSE@" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@">
     <description>download gene sequences and metadata</description>
-    <expand macro="bio_tools"/>
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="bio_tools"/>
     <expand macro="requirements"></expand>
     <expand macro="version_command"/>
     <command><![CDATA[
@@ -535,4 +535,5 @@
 or taxon.
 ]]>
     </help>
+    <expand macro="citations"/>
 </tool>
--- a/datasets_genome.xml	Sat Dec 03 13:29:32 2022 +0000
+++ b/datasets_genome.xml	Fri Dec 09 15:11:16 2022 +0000
@@ -1,9 +1,9 @@
 <tool id="datasets_download_genome" name="NCBI Datasets Genomes" profile="@PROFILE@" license="@LICENSE@" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@">
     <description>download genome sequence, annotation and metadata</description>
-    <expand macro="bio_tools"/>
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="bio_tools"/>
     <expand macro="requirements"></expand>
     <expand macro="version_command"/>
     <command><![CDATA[
@@ -487,5 +487,5 @@
 can then be downloaded in a second call using the accessions.
 ]]>
     </help>
-
+    <expand macro="citations"/>
 </tool>
--- a/macros.xml	Sat Dec 03 13:29:32 2022 +0000
+++ b/macros.xml	Fri Dec 09 15:11:16 2022 +0000
@@ -1,6 +1,6 @@
 <macros>
-    <token name="@TOOL_VERSION@">14.4</token>
-    <token name="@VERSION_SUFFIX@">1</token>
+    <token name="@TOOL_VERSION@">14.6.0</token>
+    <token name="@VERSION_SUFFIX@">0</token>
     <token name="@PROFILE@">21.01</token>
     <token name="@LICENSE@">MIT</token>
     <token name="@PROFILE_AND_LICENSE@">profile="@PROFILE@" license="@LICENSE@"</token>
@@ -310,7 +310,6 @@
 --released-after '$filters.released_after'
 #end if
     </token>
-
     <xml name="genome_fasta_assert" tokens="el1,el2,expression" token_ftype="fasta" token_expression_n="1">
         <element name="@EL1@">
             <element name="@EL2@" ftype="@FTYPE@" decompress="true">
@@ -320,4 +319,14 @@
             </element>
         </element>
     </xml>
+    <xml name="citations">
+        <citations>
+            <citation type="bibtex">@misc{NCBI,
+                author = "{NCBI}",
+                title = "NCBI Datasets",
+                year = "2022",
+                url = "https://github.com/ncbi/datasets"}
+            </citation>
+        </citations>
+    </xml>
 </macros>