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comparison efetch.xml @ 0:91efba463050 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
author iuc
date Tue, 22 Mar 2022 22:30:08 +0000
parents
children 59dfa639e78e
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-1:000000000000 0:91efba463050
1 <tool id="ncbi_entrez_direct_efetch" name="NCBI EFetch" version="@TOOL_VERSION@">
2 <description>fetch records from NCBI</description>
3 <macros>
4 <import>macros.xml</import>
5 </macros>
6 <expand macro="requirements"/>
7 <version_command>efetch -version</version_command>
8 <command detect_errors="exit_code"><![CDATA[
9 @ECONTACT@
10 efetch
11 #if str( $db.db ) == "":
12 #if str( $db.db_manual ):
13 -db "${db.db_manual}"
14 #end if
15 #if str( $db.format ):
16 -format "${db.format}"
17 #end if
18 #if str( $db.mode ):
19 -mode "${db.mode}"
20 #end if
21 #else:
22 #if str( $db.db ):
23 -db "${db.db}"
24 #end if
25 #if str( $db.format.format ):
26 -format "${db.format.format}"
27 #end if
28 #if str( $db.format.mode ):
29 -mode "${db.format.mode}"
30 #end if
31 #end if
32 #if str( $ranges.seq_start ):
33 -seq_start "${ranges.seq_start}"
34 #end if
35 #if str( $ranges.seq_stop ):
36 -seq_stop "${ranges.seq_stop}"
37 #end if
38 #if str( $ranges.strand ):
39 -strand "${ranges.strand}"
40 #end if
41 #if str( $ranges.complexity ):
42 -complexity "${ranges.complexity}"
43 #end if
44 #if str( $ranges.chr_start ):
45 -chr_start "${ranges.chr_start}"
46 #end if
47 #if str( $ranges.chr_stop ):
48 -chr_stop "${ranges.chr_stop}"
49 #end if
50 #if str( $query.source ) == "id":
51 -id "${query.id}"
52 #else:
53 < '$query.input_file'
54 #end if
55 > '${output_result}'
56 ]]>
57 </command>
58 <inputs>
59 <conditional name="query">
60 <param name="source" type="select" label="Select query source">
61 <option value="history">NCBI WebEnv History</option>
62 <option value="id">Direct Entry</option>
63 </param>
64 <when value="history">
65 <param label="Input File" name="input_file" type="data" format="xml"/>
66 </when>
67 <when value="id">
68 <param label="Query ID" name="id" type="text" argument="-id"/>
69 </when>
70 </conditional>
71
72 <conditional name="db">
73 <param name="db" type="select" label="Database" argument="-db">
74 <option value="annotinfo">annotinfo</option>
75 <option value="assembly">assembly</option>
76 <option value="bioproject">bioproject</option>
77 <option value="biosample">biosample</option>
78 <option value="biosystems">biosystems</option>
79 <option value="blastdbinfo">blastdbinfo</option>
80 <option value="books">books</option>
81 <option value="cdd">cdd</option>
82 <option value="clinvar">clinvar</option>
83 <option value="clone">clone</option>
84 <option value="dbvar">dbvar</option>
85 <option value="gap">gap</option>
86 <option value="gapplus">gapplus</option>
87 <option value="gds">gds</option>
88 <option value="gencoll">gencoll</option>
89 <option value="gene">gene</option>
90 <option value="genome">genome</option>
91 <option value="geoprofiles">geoprofiles</option>
92 <option value="grasp">grasp</option>
93 <option value="gtr">gtr</option>
94 <option value="homologene">homologene</option>
95 <option value="medgen">medgen</option>
96 <option value="mesh">mesh</option>
97 <option value="ncbisearch">ncbisearch</option>
98 <option value="nlmcatalog">nlmcatalog</option>
99 <option value="nuccore">nuccore</option>
100 <option value="nucest">nucest</option>
101 <option value="nucgss">nucgss</option>
102 <option value="nucleotide">nucleotide</option>
103 <option value="omim">omim</option>
104 <option value="orgtrack">orgtrack</option>
105 <option value="pcassay">pcassay</option>
106 <option value="pccompound">pccompound</option>
107 <option value="pcsubstance">pcsubstance</option>
108 <option value="pmc">pmc</option>
109 <option value="popset">popset</option>
110 <option value="probe">probe</option>
111 <option value="protein">protein</option>
112 <option value="proteinclusters">proteinclusters</option>
113 <option value="pubmed">pubmed</option>
114 <option value="pubmedhealth">pubmedhealth</option>
115 <option value="seqannot">seqannot</option>
116 <option value="sequences">sequences</option>
117 <option value="snp">snp</option>
118 <option value="sra">sra</option>
119 <option value="structure">structure</option>
120 <option value="taxonomy">taxonomy</option>
121 <option value="unigene">unigene</option>
122 <option value="">Manual Entry</option>
123 </param>
124 <when value="annotinfo">
125 <conditional name="format">
126 <param name="format" type="select" label="Format" argument="-format">
127 <option value="">None</option>
128 <option value="docsum">docsum</option>
129 <option value="full">full</option>
130 <option value="uid">uid</option>
131 <option value="url">url</option>
132 <option value="xml">xml</option>
133 </param>
134 <when value="">
135 <param name="mode" type="select" label="Mode" argument="-mode">
136 <option value="">None</option>
137 </param>
138 </when>
139 <when value="docsum">
140 <param name="mode" type="select" label="Mode" argument="-mode">
141 <option value="">None</option>
142 <option value="json">json</option>
143 </param>
144 </when>
145 <when value="full">
146 <param name="mode" type="select" label="Mode" argument="-mode">
147 <option value="">None</option>
148 </param>
149 </when>
150 <when value="uid">
151 <param name="mode" type="select" label="Mode" argument="-mode">
152 <option value="">None</option>
153 </param>
154 </when>
155 <when value="url">
156 <param name="mode" type="select" label="Mode" argument="-mode">
157 <option value="">None</option>
158 </param>
159 </when>
160 <when value="xml">
161 <param name="mode" type="select" label="Mode" argument="-mode">
162 <option value="">None</option>
163 </param>
164 </when>
165 </conditional>
166 </when>
167 <when value="assembly">
168 <conditional name="format">
169 <param name="format" type="select" label="Format" argument="-format">
170 <option value="">None</option>
171 <option value="docsum">docsum</option>
172 <option value="full">full</option>
173 <option value="uid">uid</option>
174 <option value="url">url</option>
175 <option value="xml">xml</option>
176 </param>
177 <when value="">
178 <param name="mode" type="select" label="Mode" argument="-mode">
179 <option value="">None</option>
180 </param>
181 </when>
182 <when value="docsum">
183 <param name="mode" type="select" label="Mode" argument="-mode">
184 <option value="">None</option>
185 <option value="json">json</option>
186 </param>
187 </when>
188 <when value="full">
189 <param name="mode" type="select" label="Mode" argument="-mode">
190 <option value="">None</option>
191 </param>
192 </when>
193 <when value="uid">
194 <param name="mode" type="select" label="Mode" argument="-mode">
195 <option value="">None</option>
196 </param>
197 </when>
198 <when value="url">
199 <param name="mode" type="select" label="Mode" argument="-mode">
200 <option value="">None</option>
201 </param>
202 </when>
203 <when value="xml">
204 <param name="mode" type="select" label="Mode" argument="-mode">
205 <option value="">None</option>
206 </param>
207 </when>
208 </conditional>
209 </when>
210 <when value="bioproject">
211 <conditional name="format">
212 <param name="format" type="select" label="Format" argument="-format">
213 <option value="">None</option>
214 <option value="docsum">docsum</option>
215 <option value="full">full</option>
216 <option value="native">native</option>
217 <option value="uid">uid</option>
218 <option value="url">url</option>
219 <option value="xml">xml</option>
220 </param>
221 <when value="">
222 <param name="mode" type="select" label="Mode" argument="-mode">
223 <option value="">None</option>
224 </param>
225 </when>
226 <when value="docsum">
227 <param name="mode" type="select" label="Mode" argument="-mode">
228 <option value="">None</option>
229 <option value="json">json</option>
230 </param>
231 </when>
232 <when value="full">
233 <param name="mode" type="select" label="Mode" argument="-mode">
234 <option value="">None</option>
235 </param>
236 </when>
237 <when value="native">
238 <param name="mode" type="select" label="Mode" argument="-mode">
239 <option value="">None</option>
240 <option value="xml">xml</option>
241 </param>
242 </when>
243 <when value="uid">
244 <param name="mode" type="select" label="Mode" argument="-mode">
245 <option value="">None</option>
246 </param>
247 </when>
248 <when value="url">
249 <param name="mode" type="select" label="Mode" argument="-mode">
250 <option value="">None</option>
251 </param>
252 </when>
253 <when value="xml">
254 <param name="mode" type="select" label="Mode" argument="-mode">
255 <option value="">None</option>
256 </param>
257 </when>
258 </conditional>
259 </when>
260 <when value="biosample">
261 <conditional name="format">
262 <param name="format" type="select" label="Format" argument="-format">
263 <option value="">None</option>
264 <option value="docsum">docsum</option>
265 <option value="full">full</option>
266 <option value="native">native</option>
267 <option value="uid">uid</option>
268 <option value="url">url</option>
269 <option value="xml">xml</option>
270 </param>
271 <when value="">
272 <param name="mode" type="select" label="Mode" argument="-mode">
273 <option value="">None</option>
274 </param>
275 </when>
276 <when value="docsum">
277 <param name="mode" type="select" label="Mode" argument="-mode">
278 <option value="">None</option>
279 <option value="json">json</option>
280 </param>
281 </when>
282 <when value="full">
283 <param name="mode" type="select" label="Mode" argument="-mode">
284 <option value="">None</option>
285 </param>
286 </when>
287 <when value="native">
288 <param name="mode" type="select" label="Mode" argument="-mode">
289 <option value="">None</option>
290 <option value="xml">xml</option>
291 </param>
292 </when>
293 <when value="uid">
294 <param name="mode" type="select" label="Mode" argument="-mode">
295 <option value="">None</option>
296 </param>
297 </when>
298 <when value="url">
299 <param name="mode" type="select" label="Mode" argument="-mode">
300 <option value="">None</option>
301 </param>
302 </when>
303 <when value="xml">
304 <param name="mode" type="select" label="Mode" argument="-mode">
305 <option value="">None</option>
306 </param>
307 </when>
308 </conditional>
309 </when>
310 <when value="biosystems">
311 <conditional name="format">
312 <param name="format" type="select" label="Format" argument="-format">
313 <option value="">None</option>
314 <option value="docsum">docsum</option>
315 <option value="full">full</option>
316 <option value="native">native</option>
317 <option value="uid">uid</option>
318 <option value="url">url</option>
319 <option value="xml">xml</option>
320 </param>
321 <when value="">
322 <param name="mode" type="select" label="Mode" argument="-mode">
323 <option value="">None</option>
324 </param>
325 </when>
326 <when value="docsum">
327 <param name="mode" type="select" label="Mode" argument="-mode">
328 <option value="">None</option>
329 <option value="json">json</option>
330 </param>
331 </when>
332 <when value="full">
333 <param name="mode" type="select" label="Mode" argument="-mode">
334 <option value="">None</option>
335 </param>
336 </when>
337 <when value="native">
338 <param name="mode" type="select" label="Mode" argument="-mode">
339 <option value="">None</option>
340 <option value="xml">xml</option>
341 </param>
342 </when>
343 <when value="uid">
344 <param name="mode" type="select" label="Mode" argument="-mode">
345 <option value="">None</option>
346 </param>
347 </when>
348 <when value="url">
349 <param name="mode" type="select" label="Mode" argument="-mode">
350 <option value="">None</option>
351 </param>
352 </when>
353 <when value="xml">
354 <param name="mode" type="select" label="Mode" argument="-mode">
355 <option value="">None</option>
356 </param>
357 </when>
358 </conditional>
359 </when>
360 <when value="blastdbinfo">
361 <conditional name="format">
362 <param name="format" type="select" label="Format" argument="-format">
363 <option value="">None</option>
364 <option value="docsum">docsum</option>
365 <option value="full">full</option>
366 <option value="uid">uid</option>
367 <option value="url">url</option>
368 <option value="xml">xml</option>
369 </param>
370 <when value="">
371 <param name="mode" type="select" label="Mode" argument="-mode">
372 <option value="">None</option>
373 </param>
374 </when>
375 <when value="docsum">
376 <param name="mode" type="select" label="Mode" argument="-mode">
377 <option value="">None</option>
378 <option value="json">json</option>
379 </param>
380 </when>
381 <when value="full">
382 <param name="mode" type="select" label="Mode" argument="-mode">
383 <option value="">None</option>
384 </param>
385 </when>
386 <when value="uid">
387 <param name="mode" type="select" label="Mode" argument="-mode">
388 <option value="">None</option>
389 </param>
390 </when>
391 <when value="url">
392 <param name="mode" type="select" label="Mode" argument="-mode">
393 <option value="">None</option>
394 </param>
395 </when>
396 <when value="xml">
397 <param name="mode" type="select" label="Mode" argument="-mode">
398 <option value="">None</option>
399 </param>
400 </when>
401 </conditional>
402 </when>
403 <when value="books">
404 <conditional name="format">
405 <param name="format" type="select" label="Format" argument="-format">
406 <option value="">None</option>
407 <option value="docsum">docsum</option>
408 <option value="full">full</option>
409 <option value="uid">uid</option>
410 <option value="url">url</option>
411 <option value="xml">xml</option>
412 </param>
413 <when value="">
414 <param name="mode" type="select" label="Mode" argument="-mode">
415 <option value="">None</option>
416 </param>
417 </when>
418 <when value="docsum">
419 <param name="mode" type="select" label="Mode" argument="-mode">
420 <option value="">None</option>
421 <option value="json">json</option>
422 </param>
423 </when>
424 <when value="full">
425 <param name="mode" type="select" label="Mode" argument="-mode">
426 <option value="">None</option>
427 </param>
428 </when>
429 <when value="uid">
430 <param name="mode" type="select" label="Mode" argument="-mode">
431 <option value="">None</option>
432 </param>
433 </when>
434 <when value="url">
435 <param name="mode" type="select" label="Mode" argument="-mode">
436 <option value="">None</option>
437 </param>
438 </when>
439 <when value="xml">
440 <param name="mode" type="select" label="Mode" argument="-mode">
441 <option value="">None</option>
442 </param>
443 </when>
444 </conditional>
445 </when>
446 <when value="cdd">
447 <conditional name="format">
448 <param name="format" type="select" label="Format" argument="-format">
449 <option value="">None</option>
450 <option value="docsum">docsum</option>
451 <option value="full">full</option>
452 <option value="uid">uid</option>
453 <option value="url">url</option>
454 <option value="xml">xml</option>
455 </param>
456 <when value="">
457 <param name="mode" type="select" label="Mode" argument="-mode">
458 <option value="">None</option>
459 </param>
460 </when>
461 <when value="docsum">
462 <param name="mode" type="select" label="Mode" argument="-mode">
463 <option value="">None</option>
464 <option value="json">json</option>
465 </param>
466 </when>
467 <when value="full">
468 <param name="mode" type="select" label="Mode" argument="-mode">
469 <option value="">None</option>
470 </param>
471 </when>
472 <when value="uid">
473 <param name="mode" type="select" label="Mode" argument="-mode">
474 <option value="">None</option>
475 </param>
476 </when>
477 <when value="url">
478 <param name="mode" type="select" label="Mode" argument="-mode">
479 <option value="">None</option>
480 </param>
481 </when>
482 <when value="xml">
483 <param name="mode" type="select" label="Mode" argument="-mode">
484 <option value="">None</option>
485 </param>
486 </when>
487 </conditional>
488 </when>
489 <when value="clinvar">
490 <conditional name="format">
491 <param name="format" type="select" label="Format" argument="-format">
492 <option value="">None</option>
493 <option value="docsum">docsum</option>
494 <option value="full">full</option>
495 <option value="uid">uid</option>
496 <option value="url">url</option>
497 <option value="xml">xml</option>
498 </param>
499 <when value="">
500 <param name="mode" type="select" label="Mode" argument="-mode">
501 <option value="">None</option>
502 </param>
503 </when>
504 <when value="docsum">
505 <param name="mode" type="select" label="Mode" argument="-mode">
506 <option value="">None</option>
507 <option value="json">json</option>
508 </param>
509 </when>
510 <when value="full">
511 <param name="mode" type="select" label="Mode" argument="-mode">
512 <option value="">None</option>
513 </param>
514 </when>
515 <when value="uid">
516 <param name="mode" type="select" label="Mode" argument="-mode">
517 <option value="">None</option>
518 </param>
519 </when>
520 <when value="url">
521 <param name="mode" type="select" label="Mode" argument="-mode">
522 <option value="">None</option>
523 </param>
524 </when>
525 <when value="xml">
526 <param name="mode" type="select" label="Mode" argument="-mode">
527 <option value="">None</option>
528 </param>
529 </when>
530 </conditional>
531 </when>
532 <when value="clone">
533 <conditional name="format">
534 <param name="format" type="select" label="Format" argument="-format">
535 <option value="">None</option>
536 <option value="docsum">docsum</option>
537 <option value="full">full</option>
538 <option value="uid">uid</option>
539 <option value="url">url</option>
540 <option value="xml">xml</option>
541 </param>
542 <when value="">
543 <param name="mode" type="select" label="Mode" argument="-mode">
544 <option value="">None</option>
545 </param>
546 </when>
547 <when value="docsum">
548 <param name="mode" type="select" label="Mode" argument="-mode">
549 <option value="">None</option>
550 <option value="json">json</option>
551 </param>
552 </when>
553 <when value="full">
554 <param name="mode" type="select" label="Mode" argument="-mode">
555 <option value="">None</option>
556 </param>
557 </when>
558 <when value="uid">
559 <param name="mode" type="select" label="Mode" argument="-mode">
560 <option value="">None</option>
561 </param>
562 </when>
563 <when value="url">
564 <param name="mode" type="select" label="Mode" argument="-mode">
565 <option value="">None</option>
566 </param>
567 </when>
568 <when value="xml">
569 <param name="mode" type="select" label="Mode" argument="-mode">
570 <option value="">None</option>
571 </param>
572 </when>
573 </conditional>
574 </when>
575 <when value="dbvar">
576 <conditional name="format">
577 <param name="format" type="select" label="Format" argument="-format">
578 <option value="">None</option>
579 <option value="docsum">docsum</option>
580 <option value="full">full</option>
581 <option value="uid">uid</option>
582 <option value="url">url</option>
583 <option value="xml">xml</option>
584 </param>
585 <when value="">
586 <param name="mode" type="select" label="Mode" argument="-mode">
587 <option value="">None</option>
588 </param>
589 </when>
590 <when value="docsum">
591 <param name="mode" type="select" label="Mode" argument="-mode">
592 <option value="">None</option>
593 <option value="json">json</option>
594 </param>
595 </when>
596 <when value="full">
597 <param name="mode" type="select" label="Mode" argument="-mode">
598 <option value="">None</option>
599 </param>
600 </when>
601 <when value="uid">
602 <param name="mode" type="select" label="Mode" argument="-mode">
603 <option value="">None</option>
604 </param>
605 </when>
606 <when value="url">
607 <param name="mode" type="select" label="Mode" argument="-mode">
608 <option value="">None</option>
609 </param>
610 </when>
611 <when value="xml">
612 <param name="mode" type="select" label="Mode" argument="-mode">
613 <option value="">None</option>
614 </param>
615 </when>
616 </conditional>
617 </when>
618 <when value="gap">
619 <conditional name="format">
620 <param name="format" type="select" label="Format" argument="-format">
621 <option value="">None</option>
622 <option value="docsum">docsum</option>
623 <option value="full">full</option>
624 <option value="uid">uid</option>
625 <option value="url">url</option>
626 <option value="xml">xml</option>
627 </param>
628 <when value="">
629 <param name="mode" type="select" label="Mode" argument="-mode">
630 <option value="">None</option>
631 </param>
632 </when>
633 <when value="docsum">
634 <param name="mode" type="select" label="Mode" argument="-mode">
635 <option value="">None</option>
636 <option value="json">json</option>
637 </param>
638 </when>
639 <when value="full">
640 <param name="mode" type="select" label="Mode" argument="-mode">
641 <option value="">None</option>
642 </param>
643 </when>
644 <when value="uid">
645 <param name="mode" type="select" label="Mode" argument="-mode">
646 <option value="">None</option>
647 </param>
648 </when>
649 <when value="url">
650 <param name="mode" type="select" label="Mode" argument="-mode">
651 <option value="">None</option>
652 </param>
653 </when>
654 <when value="xml">
655 <param name="mode" type="select" label="Mode" argument="-mode">
656 <option value="">None</option>
657 </param>
658 </when>
659 </conditional>
660 </when>
661 <when value="gapplus">
662 <conditional name="format">
663 <param name="format" type="select" label="Format" argument="-format">
664 <option value="">None</option>
665 <option value="docsum">docsum</option>
666 <option value="full">full</option>
667 <option value="uid">uid</option>
668 <option value="url">url</option>
669 <option value="xml">xml</option>
670 </param>
671 <when value="">
672 <param name="mode" type="select" label="Mode" argument="-mode">
673 <option value="">None</option>
674 </param>
675 </when>
676 <when value="docsum">
677 <param name="mode" type="select" label="Mode" argument="-mode">
678 <option value="">None</option>
679 <option value="json">json</option>
680 </param>
681 </when>
682 <when value="full">
683 <param name="mode" type="select" label="Mode" argument="-mode">
684 <option value="">None</option>
685 </param>
686 </when>
687 <when value="uid">
688 <param name="mode" type="select" label="Mode" argument="-mode">
689 <option value="">None</option>
690 </param>
691 </when>
692 <when value="url">
693 <param name="mode" type="select" label="Mode" argument="-mode">
694 <option value="">None</option>
695 </param>
696 </when>
697 <when value="xml">
698 <param name="mode" type="select" label="Mode" argument="-mode">
699 <option value="">None</option>
700 </param>
701 </when>
702 </conditional>
703 </when>
704 <when value="gds">
705 <conditional name="format">
706 <param name="format" type="select" label="Format" argument="-format">
707 <option value="">None</option>
708 <option value="docsum">docsum</option>
709 <option value="full">full</option>
710 <option value="native">native</option>
711 <option value="summary">summary</option>
712 <option value="uid">uid</option>
713 <option value="url">url</option>
714 <option value="xml">xml</option>
715 </param>
716 <when value="">
717 <param name="mode" type="select" label="Mode" argument="-mode">
718 <option value="">None</option>
719 </param>
720 </when>
721 <when value="docsum">
722 <param name="mode" type="select" label="Mode" argument="-mode">
723 <option value="">None</option>
724 <option value="json">json</option>
725 </param>
726 </when>
727 <when value="full">
728 <param name="mode" type="select" label="Mode" argument="-mode">
729 <option value="">None</option>
730 </param>
731 </when>
732 <when value="native">
733 <param name="mode" type="select" label="Mode" argument="-mode">
734 <option value="">None</option>
735 <option value="xml">xml</option>
736 </param>
737 </when>
738 <when value="summary">
739 <param name="mode" type="select" label="Mode" argument="-mode">
740 <option value="">None</option>
741 </param>
742 </when>
743 <when value="uid">
744 <param name="mode" type="select" label="Mode" argument="-mode">
745 <option value="">None</option>
746 </param>
747 </when>
748 <when value="url">
749 <param name="mode" type="select" label="Mode" argument="-mode">
750 <option value="">None</option>
751 </param>
752 </when>
753 <when value="xml">
754 <param name="mode" type="select" label="Mode" argument="-mode">
755 <option value="">None</option>
756 </param>
757 </when>
758 </conditional>
759 </when>
760 <when value="gencoll">
761 <conditional name="format">
762 <param name="format" type="select" label="Format" argument="-format">
763 <option value="">None</option>
764 <option value="docsum">docsum</option>
765 <option value="full">full</option>
766 <option value="uid">uid</option>
767 <option value="url">url</option>
768 <option value="xml">xml</option>
769 </param>
770 <when value="">
771 <param name="mode" type="select" label="Mode" argument="-mode">
772 <option value="">None</option>
773 </param>
774 </when>
775 <when value="docsum">
776 <param name="mode" type="select" label="Mode" argument="-mode">
777 <option value="">None</option>
778 <option value="json">json</option>
779 </param>
780 </when>
781 <when value="full">
782 <param name="mode" type="select" label="Mode" argument="-mode">
783 <option value="">None</option>
784 </param>
785 </when>
786 <when value="uid">
787 <param name="mode" type="select" label="Mode" argument="-mode">
788 <option value="">None</option>
789 </param>
790 </when>
791 <when value="url">
792 <param name="mode" type="select" label="Mode" argument="-mode">
793 <option value="">None</option>
794 </param>
795 </when>
796 <when value="xml">
797 <param name="mode" type="select" label="Mode" argument="-mode">
798 <option value="">None</option>
799 </param>
800 </when>
801 </conditional>
802 </when>
803 <when value="gene">
804 <conditional name="format">
805 <param name="format" type="select" label="Format" argument="-format">
806 <option value="">None</option>
807 <option value="docsum">docsum</option>
808 <option value="full">full</option>
809 <option value="gene_table">gene_table</option>
810 <option value="native">native</option>
811 <option value="tabular">tabular</option>
812 <option value="uid">uid</option>
813 <option value="url">url</option>
814 <option value="xml">xml</option>
815 </param>
816 <when value="">
817 <param name="mode" type="select" label="Mode" argument="-mode">
818 <option value="">None</option>
819 </param>
820 </when>
821 <when value="docsum">
822 <param name="mode" type="select" label="Mode" argument="-mode">
823 <option value="">None</option>
824 <option value="json">json</option>
825 </param>
826 </when>
827 <when value="full">
828 <param name="mode" type="select" label="Mode" argument="-mode">
829 <option value="">None</option>
830 </param>
831 </when>
832 <when value="gene_table">
833 <param name="mode" type="select" label="Mode" argument="-mode">
834 <option value="">None</option>
835 </param>
836 </when>
837 <when value="native">
838 <param name="mode" type="select" label="Mode" argument="-mode">
839 <option value="">None</option>
840 <option value="asn.1">asn.1</option>
841 <option value="xml">xml</option>
842 </param>
843 </when>
844 <when value="tabular">
845 <param name="mode" type="select" label="Mode" argument="-mode">
846 <option value="">None</option>
847 </param>
848 </when>
849 <when value="uid">
850 <param name="mode" type="select" label="Mode" argument="-mode">
851 <option value="">None</option>
852 </param>
853 </when>
854 <when value="url">
855 <param name="mode" type="select" label="Mode" argument="-mode">
856 <option value="">None</option>
857 </param>
858 </when>
859 <when value="xml">
860 <param name="mode" type="select" label="Mode" argument="-mode">
861 <option value="">None</option>
862 </param>
863 </when>
864 </conditional>
865 </when>
866 <when value="genome">
867 <conditional name="format">
868 <param name="format" type="select" label="Format" argument="-format">
869 <option value="">None</option>
870 <option value="docsum">docsum</option>
871 <option value="full">full</option>
872 <option value="uid">uid</option>
873 <option value="url">url</option>
874 <option value="xml">xml</option>
875 </param>
876 <when value="">
877 <param name="mode" type="select" label="Mode" argument="-mode">
878 <option value="">None</option>
879 </param>
880 </when>
881 <when value="docsum">
882 <param name="mode" type="select" label="Mode" argument="-mode">
883 <option value="">None</option>
884 <option value="json">json</option>
885 </param>
886 </when>
887 <when value="full">
888 <param name="mode" type="select" label="Mode" argument="-mode">
889 <option value="">None</option>
890 </param>
891 </when>
892 <when value="uid">
893 <param name="mode" type="select" label="Mode" argument="-mode">
894 <option value="">None</option>
895 </param>
896 </when>
897 <when value="url">
898 <param name="mode" type="select" label="Mode" argument="-mode">
899 <option value="">None</option>
900 </param>
901 </when>
902 <when value="xml">
903 <param name="mode" type="select" label="Mode" argument="-mode">
904 <option value="">None</option>
905 </param>
906 </when>
907 </conditional>
908 </when>
909 <when value="geoprofiles">
910 <conditional name="format">
911 <param name="format" type="select" label="Format" argument="-format">
912 <option value="">None</option>
913 <option value="docsum">docsum</option>
914 <option value="full">full</option>
915 <option value="uid">uid</option>
916 <option value="url">url</option>
917 <option value="xml">xml</option>
918 </param>
919 <when value="">
920 <param name="mode" type="select" label="Mode" argument="-mode">
921 <option value="">None</option>
922 </param>
923 </when>
924 <when value="docsum">
925 <param name="mode" type="select" label="Mode" argument="-mode">
926 <option value="">None</option>
927 <option value="json">json</option>
928 </param>
929 </when>
930 <when value="full">
931 <param name="mode" type="select" label="Mode" argument="-mode">
932 <option value="">None</option>
933 </param>
934 </when>
935 <when value="uid">
936 <param name="mode" type="select" label="Mode" argument="-mode">
937 <option value="">None</option>
938 </param>
939 </when>
940 <when value="url">
941 <param name="mode" type="select" label="Mode" argument="-mode">
942 <option value="">None</option>
943 </param>
944 </when>
945 <when value="xml">
946 <param name="mode" type="select" label="Mode" argument="-mode">
947 <option value="">None</option>
948 </param>
949 </when>
950 </conditional>
951 </when>
952 <when value="grasp">
953 <conditional name="format">
954 <param name="format" type="select" label="Format" argument="-format">
955 <option value="">None</option>
956 <option value="docsum">docsum</option>
957 <option value="full">full</option>
958 <option value="uid">uid</option>
959 <option value="url">url</option>
960 <option value="xml">xml</option>
961 </param>
962 <when value="">
963 <param name="mode" type="select" label="Mode" argument="-mode">
964 <option value="">None</option>
965 </param>
966 </when>
967 <when value="docsum">
968 <param name="mode" type="select" label="Mode" argument="-mode">
969 <option value="">None</option>
970 <option value="json">json</option>
971 </param>
972 </when>
973 <when value="full">
974 <param name="mode" type="select" label="Mode" argument="-mode">
975 <option value="">None</option>
976 </param>
977 </when>
978 <when value="uid">
979 <param name="mode" type="select" label="Mode" argument="-mode">
980 <option value="">None</option>
981 </param>
982 </when>
983 <when value="url">
984 <param name="mode" type="select" label="Mode" argument="-mode">
985 <option value="">None</option>
986 </param>
987 </when>
988 <when value="xml">
989 <param name="mode" type="select" label="Mode" argument="-mode">
990 <option value="">None</option>
991 </param>
992 </when>
993 </conditional>
994 </when>
995 <when value="gtr">
996 <conditional name="format">
997 <param name="format" type="select" label="Format" argument="-format">
998 <option value="">None</option>
999 <option value="docsum">docsum</option>
1000 <option value="full">full</option>
1001 <option value="uid">uid</option>
1002 <option value="url">url</option>
1003 <option value="xml">xml</option>
1004 </param>
1005 <when value="">
1006 <param name="mode" type="select" label="Mode" argument="-mode">
1007 <option value="">None</option>
1008 </param>
1009 </when>
1010 <when value="docsum">
1011 <param name="mode" type="select" label="Mode" argument="-mode">
1012 <option value="">None</option>
1013 <option value="json">json</option>
1014 </param>
1015 </when>
1016 <when value="full">
1017 <param name="mode" type="select" label="Mode" argument="-mode">
1018 <option value="">None</option>
1019 </param>
1020 </when>
1021 <when value="uid">
1022 <param name="mode" type="select" label="Mode" argument="-mode">
1023 <option value="">None</option>
1024 </param>
1025 </when>
1026 <when value="url">
1027 <param name="mode" type="select" label="Mode" argument="-mode">
1028 <option value="">None</option>
1029 </param>
1030 </when>
1031 <when value="xml">
1032 <param name="mode" type="select" label="Mode" argument="-mode">
1033 <option value="">None</option>
1034 </param>
1035 </when>
1036 </conditional>
1037 </when>
1038 <when value="homologene">
1039 <conditional name="format">
1040 <param name="format" type="select" label="Format" argument="-format">
1041 <option value="">None</option>
1042 <option value="alignmentscores">alignmentscores</option>
1043 <option value="docsum">docsum</option>
1044 <option value="fasta">fasta</option>
1045 <option value="full">full</option>
1046 <option value="homologene">homologene</option>
1047 <option value="native">native</option>
1048 <option value="uid">uid</option>
1049 <option value="url">url</option>
1050 <option value="xml">xml</option>
1051 </param>
1052 <when value="">
1053 <param name="mode" type="select" label="Mode" argument="-mode">
1054 <option value="">None</option>
1055 </param>
1056 </when>
1057 <when value="alignmentscores">
1058 <param name="mode" type="select" label="Mode" argument="-mode">
1059 <option value="">None</option>
1060 </param>
1061 </when>
1062 <when value="docsum">
1063 <param name="mode" type="select" label="Mode" argument="-mode">
1064 <option value="">None</option>
1065 <option value="json">json</option>
1066 </param>
1067 </when>
1068 <when value="fasta">
1069 <param name="mode" type="select" label="Mode" argument="-mode">
1070 <option value="">None</option>
1071 </param>
1072 </when>
1073 <when value="full">
1074 <param name="mode" type="select" label="Mode" argument="-mode">
1075 <option value="">None</option>
1076 </param>
1077 </when>
1078 <when value="homologene">
1079 <param name="mode" type="select" label="Mode" argument="-mode">
1080 <option value="">None</option>
1081 </param>
1082 </when>
1083 <when value="native">
1084 <param name="mode" type="select" label="Mode" argument="-mode">
1085 <option value="">None</option>
1086 <option value="asn.1">asn.1</option>
1087 <option value="xml">xml</option>
1088 </param>
1089 </when>
1090 <when value="uid">
1091 <param name="mode" type="select" label="Mode" argument="-mode">
1092 <option value="">None</option>
1093 </param>
1094 </when>
1095 <when value="url">
1096 <param name="mode" type="select" label="Mode" argument="-mode">
1097 <option value="">None</option>
1098 </param>
1099 </when>
1100 <when value="xml">
1101 <param name="mode" type="select" label="Mode" argument="-mode">
1102 <option value="">None</option>
1103 </param>
1104 </when>
1105 </conditional>
1106 </when>
1107 <when value="medgen">
1108 <conditional name="format">
1109 <param name="format" type="select" label="Format" argument="-format">
1110 <option value="">None</option>
1111 <option value="docsum">docsum</option>
1112 <option value="full">full</option>
1113 <option value="uid">uid</option>
1114 <option value="url">url</option>
1115 <option value="xml">xml</option>
1116 </param>
1117 <when value="">
1118 <param name="mode" type="select" label="Mode" argument="-mode">
1119 <option value="">None</option>
1120 </param>
1121 </when>
1122 <when value="docsum">
1123 <param name="mode" type="select" label="Mode" argument="-mode">
1124 <option value="">None</option>
1125 <option value="json">json</option>
1126 </param>
1127 </when>
1128 <when value="full">
1129 <param name="mode" type="select" label="Mode" argument="-mode">
1130 <option value="">None</option>
1131 </param>
1132 </when>
1133 <when value="uid">
1134 <param name="mode" type="select" label="Mode" argument="-mode">
1135 <option value="">None</option>
1136 </param>
1137 </when>
1138 <when value="url">
1139 <param name="mode" type="select" label="Mode" argument="-mode">
1140 <option value="">None</option>
1141 </param>
1142 </when>
1143 <when value="xml">
1144 <param name="mode" type="select" label="Mode" argument="-mode">
1145 <option value="">None</option>
1146 </param>
1147 </when>
1148 </conditional>
1149 </when>
1150 <when value="mesh">
1151 <conditional name="format">
1152 <param name="format" type="select" label="Format" argument="-format">
1153 <option value="">None</option>
1154 <option value="docsum">docsum</option>
1155 <option value="full">full</option>
1156 <option value="native">native</option>
1157 <option value="uid">uid</option>
1158 <option value="url">url</option>
1159 <option value="xml">xml</option>
1160 </param>
1161 <when value="">
1162 <param name="mode" type="select" label="Mode" argument="-mode">
1163 <option value="">None</option>
1164 </param>
1165 </when>
1166 <when value="docsum">
1167 <param name="mode" type="select" label="Mode" argument="-mode">
1168 <option value="">None</option>
1169 <option value="json">json</option>
1170 </param>
1171 </when>
1172 <when value="full">
1173 <param name="mode" type="select" label="Mode" argument="-mode">
1174 <option value="">None</option>
1175 </param>
1176 </when>
1177 <when value="native">
1178 <param name="mode" type="select" label="Mode" argument="-mode">
1179 <option value="">None</option>
1180 <option value="xml">xml</option>
1181 </param>
1182 </when>
1183 <when value="uid">
1184 <param name="mode" type="select" label="Mode" argument="-mode">
1185 <option value="">None</option>
1186 </param>
1187 </when>
1188 <when value="url">
1189 <param name="mode" type="select" label="Mode" argument="-mode">
1190 <option value="">None</option>
1191 </param>
1192 </when>
1193 <when value="xml">
1194 <param name="mode" type="select" label="Mode" argument="-mode">
1195 <option value="">None</option>
1196 </param>
1197 </when>
1198 </conditional>
1199 </when>
1200 <when value="ncbisearch">
1201 <conditional name="format">
1202 <param name="format" type="select" label="Format" argument="-format">
1203 <option value="">None</option>
1204 <option value="docsum">docsum</option>
1205 <option value="full">full</option>
1206 <option value="uid">uid</option>
1207 <option value="url">url</option>
1208 <option value="xml">xml</option>
1209 </param>
1210 <when value="">
1211 <param name="mode" type="select" label="Mode" argument="-mode">
1212 <option value="">None</option>
1213 </param>
1214 </when>
1215 <when value="docsum">
1216 <param name="mode" type="select" label="Mode" argument="-mode">
1217 <option value="">None</option>
1218 <option value="json">json</option>
1219 </param>
1220 </when>
1221 <when value="full">
1222 <param name="mode" type="select" label="Mode" argument="-mode">
1223 <option value="">None</option>
1224 </param>
1225 </when>
1226 <when value="uid">
1227 <param name="mode" type="select" label="Mode" argument="-mode">
1228 <option value="">None</option>
1229 </param>
1230 </when>
1231 <when value="url">
1232 <param name="mode" type="select" label="Mode" argument="-mode">
1233 <option value="">None</option>
1234 </param>
1235 </when>
1236 <when value="xml">
1237 <param name="mode" type="select" label="Mode" argument="-mode">
1238 <option value="">None</option>
1239 </param>
1240 </when>
1241 </conditional>
1242 </when>
1243 <when value="nlmcatalog">
1244 <conditional name="format">
1245 <param name="format" type="select" label="Format" argument="-format">
1246 <option value="">None</option>
1247 <option value="docsum">docsum</option>
1248 <option value="full">full</option>
1249 <option value="native">native</option>
1250 <option value="uid">uid</option>
1251 <option value="url">url</option>
1252 <option value="xml">xml</option>
1253 </param>
1254 <when value="">
1255 <param name="mode" type="select" label="Mode" argument="-mode">
1256 <option value="">None</option>
1257 </param>
1258 </when>
1259 <when value="docsum">
1260 <param name="mode" type="select" label="Mode" argument="-mode">
1261 <option value="">None</option>
1262 <option value="json">json</option>
1263 </param>
1264 </when>
1265 <when value="full">
1266 <param name="mode" type="select" label="Mode" argument="-mode">
1267 <option value="">None</option>
1268 </param>
1269 </when>
1270 <when value="native">
1271 <param name="mode" type="select" label="Mode" argument="-mode">
1272 <option value="">None</option>
1273 <option value="xml">xml</option>
1274 </param>
1275 </when>
1276 <when value="uid">
1277 <param name="mode" type="select" label="Mode" argument="-mode">
1278 <option value="">None</option>
1279 </param>
1280 </when>
1281 <when value="url">
1282 <param name="mode" type="select" label="Mode" argument="-mode">
1283 <option value="">None</option>
1284 </param>
1285 </when>
1286 <when value="xml">
1287 <param name="mode" type="select" label="Mode" argument="-mode">
1288 <option value="">None</option>
1289 </param>
1290 </when>
1291 </conditional>
1292 </when>
1293 <when value="nuccore">
1294 <conditional name="format">
1295 <param name="format" type="select" label="Format" argument="-format">
1296 <option value="">None</option>
1297 <option value="docsum">docsum</option>
1298 <option value="full">full</option>
1299 <option value="uid">uid</option>
1300 <option value="url">url</option>
1301 <option value="xml">xml</option>
1302 </param>
1303 <when value="">
1304 <param name="mode" type="select" label="Mode" argument="-mode">
1305 <option value="">None</option>
1306 </param>
1307 </when>
1308 <when value="docsum">
1309 <param name="mode" type="select" label="Mode" argument="-mode">
1310 <option value="">None</option>
1311 <option value="json">json</option>
1312 </param>
1313 </when>
1314 <when value="full">
1315 <param name="mode" type="select" label="Mode" argument="-mode">
1316 <option value="">None</option>
1317 </param>
1318 </when>
1319 <when value="uid">
1320 <param name="mode" type="select" label="Mode" argument="-mode">
1321 <option value="">None</option>
1322 </param>
1323 </when>
1324 <when value="url">
1325 <param name="mode" type="select" label="Mode" argument="-mode">
1326 <option value="">None</option>
1327 </param>
1328 </when>
1329 <when value="xml">
1330 <param name="mode" type="select" label="Mode" argument="-mode">
1331 <option value="">None</option>
1332 </param>
1333 </when>
1334 </conditional>
1335 </when>
1336 <when value="nucest">
1337 <conditional name="format">
1338 <param name="format" type="select" label="Format" argument="-format">
1339 <option value="">None</option>
1340 <option value="docsum">docsum</option>
1341 <option value="full">full</option>
1342 <option value="uid">uid</option>
1343 <option value="url">url</option>
1344 <option value="xml">xml</option>
1345 </param>
1346 <when value="">
1347 <param name="mode" type="select" label="Mode" argument="-mode">
1348 <option value="">None</option>
1349 </param>
1350 </when>
1351 <when value="docsum">
1352 <param name="mode" type="select" label="Mode" argument="-mode">
1353 <option value="">None</option>
1354 <option value="json">json</option>
1355 </param>
1356 </when>
1357 <when value="full">
1358 <param name="mode" type="select" label="Mode" argument="-mode">
1359 <option value="">None</option>
1360 </param>
1361 </when>
1362 <when value="uid">
1363 <param name="mode" type="select" label="Mode" argument="-mode">
1364 <option value="">None</option>
1365 </param>
1366 </when>
1367 <when value="url">
1368 <param name="mode" type="select" label="Mode" argument="-mode">
1369 <option value="">None</option>
1370 </param>
1371 </when>
1372 <when value="xml">
1373 <param name="mode" type="select" label="Mode" argument="-mode">
1374 <option value="">None</option>
1375 </param>
1376 </when>
1377 </conditional>
1378 </when>
1379 <when value="nucgss">
1380 <conditional name="format">
1381 <param name="format" type="select" label="Format" argument="-format">
1382 <option value="">None</option>
1383 <option value="docsum">docsum</option>
1384 <option value="full">full</option>
1385 <option value="uid">uid</option>
1386 <option value="url">url</option>
1387 <option value="xml">xml</option>
1388 </param>
1389 <when value="">
1390 <param name="mode" type="select" label="Mode" argument="-mode">
1391 <option value="">None</option>
1392 </param>
1393 </when>
1394 <when value="docsum">
1395 <param name="mode" type="select" label="Mode" argument="-mode">
1396 <option value="">None</option>
1397 <option value="json">json</option>
1398 </param>
1399 </when>
1400 <when value="full">
1401 <param name="mode" type="select" label="Mode" argument="-mode">
1402 <option value="">None</option>
1403 </param>
1404 </when>
1405 <when value="uid">
1406 <param name="mode" type="select" label="Mode" argument="-mode">
1407 <option value="">None</option>
1408 </param>
1409 </when>
1410 <when value="url">
1411 <param name="mode" type="select" label="Mode" argument="-mode">
1412 <option value="">None</option>
1413 </param>
1414 </when>
1415 <when value="xml">
1416 <param name="mode" type="select" label="Mode" argument="-mode">
1417 <option value="">None</option>
1418 </param>
1419 </when>
1420 </conditional>
1421 </when>
1422 <when value="nucleotide">
1423 <conditional name="format">
1424 <param name="format" type="select" label="Format" argument="-format">
1425 <option value="">None</option>
1426 <option value="docsum">docsum</option>
1427 <option value="full">full</option>
1428 <option value="uid">uid</option>
1429 <option value="url">url</option>
1430 <option value="xml">xml</option>
1431 </param>
1432 <when value="">
1433 <param name="mode" type="select" label="Mode" argument="-mode">
1434 <option value="">None</option>
1435 </param>
1436 </when>
1437 <when value="docsum">
1438 <param name="mode" type="select" label="Mode" argument="-mode">
1439 <option value="">None</option>
1440 <option value="json">json</option>
1441 </param>
1442 </when>
1443 <when value="full">
1444 <param name="mode" type="select" label="Mode" argument="-mode">
1445 <option value="">None</option>
1446 </param>
1447 </when>
1448 <when value="uid">
1449 <param name="mode" type="select" label="Mode" argument="-mode">
1450 <option value="">None</option>
1451 </param>
1452 </when>
1453 <when value="url">
1454 <param name="mode" type="select" label="Mode" argument="-mode">
1455 <option value="">None</option>
1456 </param>
1457 </when>
1458 <when value="xml">
1459 <param name="mode" type="select" label="Mode" argument="-mode">
1460 <option value="">None</option>
1461 </param>
1462 </when>
1463 </conditional>
1464 </when>
1465 <when value="omim">
1466 <conditional name="format">
1467 <param name="format" type="select" label="Format" argument="-format">
1468 <option value="">None</option>
1469 <option value="docsum">docsum</option>
1470 <option value="full">full</option>
1471 <option value="uid">uid</option>
1472 <option value="url">url</option>
1473 <option value="xml">xml</option>
1474 </param>
1475 <when value="">
1476 <param name="mode" type="select" label="Mode" argument="-mode">
1477 <option value="">None</option>
1478 </param>
1479 </when>
1480 <when value="docsum">
1481 <param name="mode" type="select" label="Mode" argument="-mode">
1482 <option value="">None</option>
1483 <option value="json">json</option>
1484 </param>
1485 </when>
1486 <when value="full">
1487 <param name="mode" type="select" label="Mode" argument="-mode">
1488 <option value="">None</option>
1489 </param>
1490 </when>
1491 <when value="uid">
1492 <param name="mode" type="select" label="Mode" argument="-mode">
1493 <option value="">None</option>
1494 </param>
1495 </when>
1496 <when value="url">
1497 <param name="mode" type="select" label="Mode" argument="-mode">
1498 <option value="">None</option>
1499 </param>
1500 </when>
1501 <when value="xml">
1502 <param name="mode" type="select" label="Mode" argument="-mode">
1503 <option value="">None</option>
1504 </param>
1505 </when>
1506 </conditional>
1507 </when>
1508 <when value="orgtrack">
1509 <conditional name="format">
1510 <param name="format" type="select" label="Format" argument="-format">
1511 <option value="">None</option>
1512 <option value="docsum">docsum</option>
1513 <option value="full">full</option>
1514 <option value="uid">uid</option>
1515 <option value="url">url</option>
1516 <option value="xml">xml</option>
1517 </param>
1518 <when value="">
1519 <param name="mode" type="select" label="Mode" argument="-mode">
1520 <option value="">None</option>
1521 </param>
1522 </when>
1523 <when value="docsum">
1524 <param name="mode" type="select" label="Mode" argument="-mode">
1525 <option value="">None</option>
1526 <option value="json">json</option>
1527 </param>
1528 </when>
1529 <when value="full">
1530 <param name="mode" type="select" label="Mode" argument="-mode">
1531 <option value="">None</option>
1532 </param>
1533 </when>
1534 <when value="uid">
1535 <param name="mode" type="select" label="Mode" argument="-mode">
1536 <option value="">None</option>
1537 </param>
1538 </when>
1539 <when value="url">
1540 <param name="mode" type="select" label="Mode" argument="-mode">
1541 <option value="">None</option>
1542 </param>
1543 </when>
1544 <when value="xml">
1545 <param name="mode" type="select" label="Mode" argument="-mode">
1546 <option value="">None</option>
1547 </param>
1548 </when>
1549 </conditional>
1550 </when>
1551 <when value="pcassay">
1552 <conditional name="format">
1553 <param name="format" type="select" label="Format" argument="-format">
1554 <option value="">None</option>
1555 <option value="docsum">docsum</option>
1556 <option value="full">full</option>
1557 <option value="uid">uid</option>
1558 <option value="url">url</option>
1559 <option value="xml">xml</option>
1560 </param>
1561 <when value="">
1562 <param name="mode" type="select" label="Mode" argument="-mode">
1563 <option value="">None</option>
1564 </param>
1565 </when>
1566 <when value="docsum">
1567 <param name="mode" type="select" label="Mode" argument="-mode">
1568 <option value="">None</option>
1569 <option value="json">json</option>
1570 </param>
1571 </when>
1572 <when value="full">
1573 <param name="mode" type="select" label="Mode" argument="-mode">
1574 <option value="">None</option>
1575 </param>
1576 </when>
1577 <when value="uid">
1578 <param name="mode" type="select" label="Mode" argument="-mode">
1579 <option value="">None</option>
1580 </param>
1581 </when>
1582 <when value="url">
1583 <param name="mode" type="select" label="Mode" argument="-mode">
1584 <option value="">None</option>
1585 </param>
1586 </when>
1587 <when value="xml">
1588 <param name="mode" type="select" label="Mode" argument="-mode">
1589 <option value="">None</option>
1590 </param>
1591 </when>
1592 </conditional>
1593 </when>
1594 <when value="pccompound">
1595 <conditional name="format">
1596 <param name="format" type="select" label="Format" argument="-format">
1597 <option value="">None</option>
1598 <option value="docsum">docsum</option>
1599 <option value="full">full</option>
1600 <option value="uid">uid</option>
1601 <option value="url">url</option>
1602 <option value="xml">xml</option>
1603 </param>
1604 <when value="">
1605 <param name="mode" type="select" label="Mode" argument="-mode">
1606 <option value="">None</option>
1607 </param>
1608 </when>
1609 <when value="docsum">
1610 <param name="mode" type="select" label="Mode" argument="-mode">
1611 <option value="">None</option>
1612 <option value="json">json</option>
1613 </param>
1614 </when>
1615 <when value="full">
1616 <param name="mode" type="select" label="Mode" argument="-mode">
1617 <option value="">None</option>
1618 </param>
1619 </when>
1620 <when value="uid">
1621 <param name="mode" type="select" label="Mode" argument="-mode">
1622 <option value="">None</option>
1623 </param>
1624 </when>
1625 <when value="url">
1626 <param name="mode" type="select" label="Mode" argument="-mode">
1627 <option value="">None</option>
1628 </param>
1629 </when>
1630 <when value="xml">
1631 <param name="mode" type="select" label="Mode" argument="-mode">
1632 <option value="">None</option>
1633 </param>
1634 </when>
1635 </conditional>
1636 </when>
1637 <when value="pcsubstance">
1638 <conditional name="format">
1639 <param name="format" type="select" label="Format" argument="-format">
1640 <option value="">None</option>
1641 <option value="docsum">docsum</option>
1642 <option value="full">full</option>
1643 <option value="uid">uid</option>
1644 <option value="url">url</option>
1645 <option value="xml">xml</option>
1646 </param>
1647 <when value="">
1648 <param name="mode" type="select" label="Mode" argument="-mode">
1649 <option value="">None</option>
1650 </param>
1651 </when>
1652 <when value="docsum">
1653 <param name="mode" type="select" label="Mode" argument="-mode">
1654 <option value="">None</option>
1655 <option value="json">json</option>
1656 </param>
1657 </when>
1658 <when value="full">
1659 <param name="mode" type="select" label="Mode" argument="-mode">
1660 <option value="">None</option>
1661 </param>
1662 </when>
1663 <when value="uid">
1664 <param name="mode" type="select" label="Mode" argument="-mode">
1665 <option value="">None</option>
1666 </param>
1667 </when>
1668 <when value="url">
1669 <param name="mode" type="select" label="Mode" argument="-mode">
1670 <option value="">None</option>
1671 </param>
1672 </when>
1673 <when value="xml">
1674 <param name="mode" type="select" label="Mode" argument="-mode">
1675 <option value="">None</option>
1676 </param>
1677 </when>
1678 </conditional>
1679 </when>
1680 <when value="pmc">
1681 <conditional name="format">
1682 <param name="format" type="select" label="Format" argument="-format">
1683 <option value="">None</option>
1684 <option value="docsum">docsum</option>
1685 <option value="full">full</option>
1686 <option value="medline">medline</option>
1687 <option value="native">native</option>
1688 <option value="uid">uid</option>
1689 <option value="url">url</option>
1690 <option value="xml">xml</option>
1691 </param>
1692 <when value="">
1693 <param name="mode" type="select" label="Mode" argument="-mode">
1694 <option value="">None</option>
1695 </param>
1696 </when>
1697 <when value="docsum">
1698 <param name="mode" type="select" label="Mode" argument="-mode">
1699 <option value="">None</option>
1700 <option value="json">json</option>
1701 </param>
1702 </when>
1703 <when value="full">
1704 <param name="mode" type="select" label="Mode" argument="-mode">
1705 <option value="">None</option>
1706 </param>
1707 </when>
1708 <when value="medline">
1709 <param name="mode" type="select" label="Mode" argument="-mode">
1710 <option value="">None</option>
1711 </param>
1712 </when>
1713 <when value="native">
1714 <param name="mode" type="select" label="Mode" argument="-mode">
1715 <option value="">None</option>
1716 <option value="xml">xml</option>
1717 </param>
1718 </when>
1719 <when value="uid">
1720 <param name="mode" type="select" label="Mode" argument="-mode">
1721 <option value="">None</option>
1722 </param>
1723 </when>
1724 <when value="url">
1725 <param name="mode" type="select" label="Mode" argument="-mode">
1726 <option value="">None</option>
1727 </param>
1728 </when>
1729 <when value="xml">
1730 <param name="mode" type="select" label="Mode" argument="-mode">
1731 <option value="">None</option>
1732 </param>
1733 </when>
1734 </conditional>
1735 </when>
1736 <when value="popset">
1737 <conditional name="format">
1738 <param name="format" type="select" label="Format" argument="-format">
1739 <option value="">None</option>
1740 <option value="docsum">docsum</option>
1741 <option value="full">full</option>
1742 <option value="uid">uid</option>
1743 <option value="url">url</option>
1744 <option value="xml">xml</option>
1745 </param>
1746 <when value="">
1747 <param name="mode" type="select" label="Mode" argument="-mode">
1748 <option value="">None</option>
1749 </param>
1750 </when>
1751 <when value="docsum">
1752 <param name="mode" type="select" label="Mode" argument="-mode">
1753 <option value="">None</option>
1754 <option value="json">json</option>
1755 </param>
1756 </when>
1757 <when value="full">
1758 <param name="mode" type="select" label="Mode" argument="-mode">
1759 <option value="">None</option>
1760 </param>
1761 </when>
1762 <when value="uid">
1763 <param name="mode" type="select" label="Mode" argument="-mode">
1764 <option value="">None</option>
1765 </param>
1766 </when>
1767 <when value="url">
1768 <param name="mode" type="select" label="Mode" argument="-mode">
1769 <option value="">None</option>
1770 </param>
1771 </when>
1772 <when value="xml">
1773 <param name="mode" type="select" label="Mode" argument="-mode">
1774 <option value="">None</option>
1775 </param>
1776 </when>
1777 </conditional>
1778 </when>
1779 <when value="probe">
1780 <conditional name="format">
1781 <param name="format" type="select" label="Format" argument="-format">
1782 <option value="">None</option>
1783 <option value="docsum">docsum</option>
1784 <option value="full">full</option>
1785 <option value="uid">uid</option>
1786 <option value="url">url</option>
1787 <option value="xml">xml</option>
1788 </param>
1789 <when value="">
1790 <param name="mode" type="select" label="Mode" argument="-mode">
1791 <option value="">None</option>
1792 </param>
1793 </when>
1794 <when value="docsum">
1795 <param name="mode" type="select" label="Mode" argument="-mode">
1796 <option value="">None</option>
1797 <option value="json">json</option>
1798 </param>
1799 </when>
1800 <when value="full">
1801 <param name="mode" type="select" label="Mode" argument="-mode">
1802 <option value="">None</option>
1803 </param>
1804 </when>
1805 <when value="uid">
1806 <param name="mode" type="select" label="Mode" argument="-mode">
1807 <option value="">None</option>
1808 </param>
1809 </when>
1810 <when value="url">
1811 <param name="mode" type="select" label="Mode" argument="-mode">
1812 <option value="">None</option>
1813 </param>
1814 </when>
1815 <when value="xml">
1816 <param name="mode" type="select" label="Mode" argument="-mode">
1817 <option value="">None</option>
1818 </param>
1819 </when>
1820 </conditional>
1821 </when>
1822 <when value="protein">
1823 <conditional name="format">
1824 <param name="format" type="select" label="Format" argument="-format">
1825 <option value="">None</option>
1826 <option value="docsum">docsum</option>
1827 <option value="full">full</option>
1828 <option value="uid">uid</option>
1829 <option value="url">url</option>
1830 <option value="xml">xml</option>
1831 </param>
1832 <when value="">
1833 <param name="mode" type="select" label="Mode" argument="-mode">
1834 <option value="">None</option>
1835 </param>
1836 </when>
1837 <when value="docsum">
1838 <param name="mode" type="select" label="Mode" argument="-mode">
1839 <option value="">None</option>
1840 <option value="json">json</option>
1841 </param>
1842 </when>
1843 <when value="full">
1844 <param name="mode" type="select" label="Mode" argument="-mode">
1845 <option value="">None</option>
1846 </param>
1847 </when>
1848 <when value="uid">
1849 <param name="mode" type="select" label="Mode" argument="-mode">
1850 <option value="">None</option>
1851 </param>
1852 </when>
1853 <when value="url">
1854 <param name="mode" type="select" label="Mode" argument="-mode">
1855 <option value="">None</option>
1856 </param>
1857 </when>
1858 <when value="xml">
1859 <param name="mode" type="select" label="Mode" argument="-mode">
1860 <option value="">None</option>
1861 </param>
1862 </when>
1863 </conditional>
1864 </when>
1865 <when value="proteinclusters">
1866 <conditional name="format">
1867 <param name="format" type="select" label="Format" argument="-format">
1868 <option value="">None</option>
1869 <option value="docsum">docsum</option>
1870 <option value="full">full</option>
1871 <option value="uid">uid</option>
1872 <option value="url">url</option>
1873 <option value="xml">xml</option>
1874 </param>
1875 <when value="">
1876 <param name="mode" type="select" label="Mode" argument="-mode">
1877 <option value="">None</option>
1878 </param>
1879 </when>
1880 <when value="docsum">
1881 <param name="mode" type="select" label="Mode" argument="-mode">
1882 <option value="">None</option>
1883 <option value="json">json</option>
1884 </param>
1885 </when>
1886 <when value="full">
1887 <param name="mode" type="select" label="Mode" argument="-mode">
1888 <option value="">None</option>
1889 </param>
1890 </when>
1891 <when value="uid">
1892 <param name="mode" type="select" label="Mode" argument="-mode">
1893 <option value="">None</option>
1894 </param>
1895 </when>
1896 <when value="url">
1897 <param name="mode" type="select" label="Mode" argument="-mode">
1898 <option value="">None</option>
1899 </param>
1900 </when>
1901 <when value="xml">
1902 <param name="mode" type="select" label="Mode" argument="-mode">
1903 <option value="">None</option>
1904 </param>
1905 </when>
1906 </conditional>
1907 </when>
1908 <when value="pubmed">
1909 <conditional name="format">
1910 <param name="format" type="select" label="Format" argument="-format">
1911 <option value="">None</option>
1912 <option value="abstract">abstract</option>
1913 <option value="docsum">docsum</option>
1914 <option value="full">full</option>
1915 <option value="medline">medline</option>
1916 <option value="native">native</option>
1917 <option value="uid">uid</option>
1918 <option value="url">url</option>
1919 <option value="xml">xml</option>
1920 </param>
1921 <when value="">
1922 <param name="mode" type="select" label="Mode" argument="-mode">
1923 <option value="">None</option>
1924 </param>
1925 </when>
1926 <when value="abstract">
1927 <param name="mode" type="select" label="Mode" argument="-mode">
1928 <option value="">None</option>
1929 </param>
1930 </when>
1931 <when value="docsum">
1932 <param name="mode" type="select" label="Mode" argument="-mode">
1933 <option value="">None</option>
1934 <option value="json">json</option>
1935 </param>
1936 </when>
1937 <when value="full">
1938 <param name="mode" type="select" label="Mode" argument="-mode">
1939 <option value="">None</option>
1940 </param>
1941 </when>
1942 <when value="medline">
1943 <param name="mode" type="select" label="Mode" argument="-mode">
1944 <option value="">None</option>
1945 </param>
1946 </when>
1947 <when value="native">
1948 <param name="mode" type="select" label="Mode" argument="-mode">
1949 <option value="">None</option>
1950 <option value="asn.1">asn.1</option>
1951 <option value="xml">xml</option>
1952 </param>
1953 </when>
1954 <when value="uid">
1955 <param name="mode" type="select" label="Mode" argument="-mode">
1956 <option value="">None</option>
1957 </param>
1958 </when>
1959 <when value="url">
1960 <param name="mode" type="select" label="Mode" argument="-mode">
1961 <option value="">None</option>
1962 </param>
1963 </when>
1964 <when value="xml">
1965 <param name="mode" type="select" label="Mode" argument="-mode">
1966 <option value="">None</option>
1967 </param>
1968 </when>
1969 </conditional>
1970 </when>
1971 <when value="pubmedhealth">
1972 <conditional name="format">
1973 <param name="format" type="select" label="Format" argument="-format">
1974 <option value="">None</option>
1975 <option value="docsum">docsum</option>
1976 <option value="full">full</option>
1977 <option value="uid">uid</option>
1978 <option value="url">url</option>
1979 <option value="xml">xml</option>
1980 </param>
1981 <when value="">
1982 <param name="mode" type="select" label="Mode" argument="-mode">
1983 <option value="">None</option>
1984 </param>
1985 </when>
1986 <when value="docsum">
1987 <param name="mode" type="select" label="Mode" argument="-mode">
1988 <option value="">None</option>
1989 <option value="json">json</option>
1990 </param>
1991 </when>
1992 <when value="full">
1993 <param name="mode" type="select" label="Mode" argument="-mode">
1994 <option value="">None</option>
1995 </param>
1996 </when>
1997 <when value="uid">
1998 <param name="mode" type="select" label="Mode" argument="-mode">
1999 <option value="">None</option>
2000 </param>
2001 </when>
2002 <when value="url">
2003 <param name="mode" type="select" label="Mode" argument="-mode">
2004 <option value="">None</option>
2005 </param>
2006 </when>
2007 <when value="xml">
2008 <param name="mode" type="select" label="Mode" argument="-mode">
2009 <option value="">None</option>
2010 </param>
2011 </when>
2012 </conditional>
2013 </when>
2014 <when value="seqannot">
2015 <conditional name="format">
2016 <param name="format" type="select" label="Format" argument="-format">
2017 <option value="">None</option>
2018 <option value="docsum">docsum</option>
2019 <option value="full">full</option>
2020 <option value="uid">uid</option>
2021 <option value="url">url</option>
2022 <option value="xml">xml</option>
2023 </param>
2024 <when value="">
2025 <param name="mode" type="select" label="Mode" argument="-mode">
2026 <option value="">None</option>
2027 </param>
2028 </when>
2029 <when value="docsum">
2030 <param name="mode" type="select" label="Mode" argument="-mode">
2031 <option value="">None</option>
2032 <option value="json">json</option>
2033 </param>
2034 </when>
2035 <when value="full">
2036 <param name="mode" type="select" label="Mode" argument="-mode">
2037 <option value="">None</option>
2038 </param>
2039 </when>
2040 <when value="uid">
2041 <param name="mode" type="select" label="Mode" argument="-mode">
2042 <option value="">None</option>
2043 </param>
2044 </when>
2045 <when value="url">
2046 <param name="mode" type="select" label="Mode" argument="-mode">
2047 <option value="">None</option>
2048 </param>
2049 </when>
2050 <when value="xml">
2051 <param name="mode" type="select" label="Mode" argument="-mode">
2052 <option value="">None</option>
2053 </param>
2054 </when>
2055 </conditional>
2056 </when>
2057 <when value="sequences">
2058 <conditional name="format">
2059 <param name="format" type="select" label="Format" argument="-format">
2060 <option value="">None</option>
2061 <option value="acc">acc</option>
2062 <option value="docsum">docsum</option>
2063 <option value="est">est</option>
2064 <option value="fasta">fasta</option>
2065 <option value="fasta_cds_aa">fasta_cds_aa</option>
2066 <option value="fasta_cds_na">fasta_cds_na</option>
2067 <option value="ft">ft</option>
2068 <option value="full">full</option>
2069 <option value="gb">gb</option>
2070 <option value="gbc">gbc</option>
2071 <option value="gbwithparts">gbwithparts</option>
2072 <option value="gene_fasta">gene_fasta</option>
2073 <option value="gp">gp</option>
2074 <option value="gpc">gpc</option>
2075 <option value="gss">gss</option>
2076 <option value="ipg">ipg</option>
2077 <option value="native">native</option>
2078 <option value="seqid">seqid</option>
2079 <option value="uid">uid</option>
2080 <option value="url">url</option>
2081 <option value="xml">xml</option>
2082 </param>
2083 <when value="">
2084 <param name="mode" type="select" label="Mode" argument="-mode">
2085 <option value="">None</option>
2086 </param>
2087 </when>
2088 <when value="acc">
2089 <param name="mode" type="select" label="Mode" argument="-mode">
2090 <option value="">None</option>
2091 </param>
2092 </when>
2093 <when value="docsum">
2094 <param name="mode" type="select" label="Mode" argument="-mode">
2095 <option value="">None</option>
2096 <option value="json">json</option>
2097 </param>
2098 </when>
2099 <when value="est">
2100 <param name="mode" type="select" label="Mode" argument="-mode">
2101 <option value="">None</option>
2102 </param>
2103 </when>
2104 <when value="fasta">
2105 <param name="mode" type="select" label="Mode" argument="-mode">
2106 <option value="">None</option>
2107 <option value="xml">xml</option>
2108 </param>
2109 </when>
2110 <when value="fasta_cds_aa">
2111 <param name="mode" type="select" label="Mode" argument="-mode">
2112 <option value="">None</option>
2113 </param>
2114 </when>
2115 <when value="fasta_cds_na">
2116 <param name="mode" type="select" label="Mode" argument="-mode">
2117 <option value="">None</option>
2118 </param>
2119 </when>
2120 <when value="ft">
2121 <param name="mode" type="select" label="Mode" argument="-mode">
2122 <option value="">None</option>
2123 </param>
2124 </when>
2125 <when value="full">
2126 <param name="mode" type="select" label="Mode" argument="-mode">
2127 <option value="">None</option>
2128 </param>
2129 </when>
2130 <when value="gb">
2131 <param name="mode" type="select" label="Mode" argument="-mode">
2132 <option value="">None</option>
2133 <option value="xml">xml</option>
2134 </param>
2135 </when>
2136 <when value="gbc">
2137 <param name="mode" type="select" label="Mode" argument="-mode">
2138 <option value="">None</option>
2139 <option value="xml">xml</option>
2140 </param>
2141 </when>
2142 <when value="gbwithparts">
2143 <param name="mode" type="select" label="Mode" argument="-mode">
2144 <option value="">None</option>
2145 </param>
2146 </when>
2147 <when value="gene_fasta">
2148 <param name="mode" type="select" label="Mode" argument="-mode">
2149 <option value="">None</option>
2150 </param>
2151 </when>
2152 <when value="gp">
2153 <param name="mode" type="select" label="Mode" argument="-mode">
2154 <option value="">None</option>
2155 <option value="xml">xml</option>
2156 </param>
2157 </when>
2158 <when value="gpc">
2159 <param name="mode" type="select" label="Mode" argument="-mode">
2160 <option value="">None</option>
2161 <option value="xml">xml</option>
2162 </param>
2163 </when>
2164 <when value="gss">
2165 <param name="mode" type="select" label="Mode" argument="-mode">
2166 <option value="">None</option>
2167 </param>
2168 </when>
2169 <when value="ipg">
2170 <param name="mode" type="select" label="Mode" argument="-mode">
2171 <option value="">None</option>
2172 <option value="xml">xml</option>
2173 </param>
2174 </when>
2175 <when value="native">
2176 <param name="mode" type="select" label="Mode" argument="-mode">
2177 <option value="">None</option>
2178 <option value="text">text</option>
2179 <option value="xml">xml</option>
2180 </param>
2181 </when>
2182 <when value="seqid">
2183 <param name="mode" type="select" label="Mode" argument="-mode">
2184 <option value="">None</option>
2185 </param>
2186 </when>
2187 <when value="uid">
2188 <param name="mode" type="select" label="Mode" argument="-mode">
2189 <option value="">None</option>
2190 </param>
2191 </when>
2192 <when value="url">
2193 <param name="mode" type="select" label="Mode" argument="-mode">
2194 <option value="">None</option>
2195 </param>
2196 </when>
2197 <when value="xml">
2198 <param name="mode" type="select" label="Mode" argument="-mode">
2199 <option value="">None</option>
2200 </param>
2201 </when>
2202 </conditional>
2203 </when>
2204 <when value="snp">
2205 <conditional name="format">
2206 <param name="format" type="select" label="Format" argument="-format">
2207 <option value="">None</option>
2208 <option value="chr">chr</option>
2209 <option value="docset">docset</option>
2210 <option value="docsum">docsum</option>
2211 <option value="fasta">fasta</option>
2212 <option value="flt">flt</option>
2213 <option value="full">full</option>
2214 <option value="native">native</option>
2215 <option value="rsr">rsr</option>
2216 <option value="ssexemplar">ssexemplar</option>
2217 <option value="uid">uid</option>
2218 <option value="url">url</option>
2219 <option value="xml">xml</option>
2220 </param>
2221 <when value="">
2222 <param name="mode" type="select" label="Mode" argument="-mode">
2223 <option value="">None</option>
2224 </param>
2225 </when>
2226 <when value="chr">
2227 <param name="mode" type="select" label="Mode" argument="-mode">
2228 <option value="">None</option>
2229 </param>
2230 </when>
2231 <when value="docset">
2232 <param name="mode" type="select" label="Mode" argument="-mode">
2233 <option value="">None</option>
2234 </param>
2235 </when>
2236 <when value="docsum">
2237 <param name="mode" type="select" label="Mode" argument="-mode">
2238 <option value="">None</option>
2239 <option value="json">json</option>
2240 </param>
2241 </when>
2242 <when value="fasta">
2243 <param name="mode" type="select" label="Mode" argument="-mode">
2244 <option value="">None</option>
2245 </param>
2246 </when>
2247 <when value="flt">
2248 <param name="mode" type="select" label="Mode" argument="-mode">
2249 <option value="">None</option>
2250 </param>
2251 </when>
2252 <when value="full">
2253 <param name="mode" type="select" label="Mode" argument="-mode">
2254 <option value="">None</option>
2255 </param>
2256 </when>
2257 <when value="native">
2258 <param name="mode" type="select" label="Mode" argument="-mode">
2259 <option value="">None</option>
2260 <option value="asn.1">asn.1</option>
2261 <option value="xml">xml</option>
2262 </param>
2263 </when>
2264 <when value="rsr">
2265 <param name="mode" type="select" label="Mode" argument="-mode">
2266 <option value="">None</option>
2267 </param>
2268 </when>
2269 <when value="ssexemplar">
2270 <param name="mode" type="select" label="Mode" argument="-mode">
2271 <option value="">None</option>
2272 </param>
2273 </when>
2274 <when value="uid">
2275 <param name="mode" type="select" label="Mode" argument="-mode">
2276 <option value="">None</option>
2277 </param>
2278 </when>
2279 <when value="url">
2280 <param name="mode" type="select" label="Mode" argument="-mode">
2281 <option value="">None</option>
2282 </param>
2283 </when>
2284 <when value="xml">
2285 <param name="mode" type="select" label="Mode" argument="-mode">
2286 <option value="">None</option>
2287 </param>
2288 </when>
2289 </conditional>
2290 </when>
2291 <when value="sra">
2292 <conditional name="format">
2293 <param name="format" type="select" label="Format" argument="-format">
2294 <option value="">None</option>
2295 <option value="docsum">docsum</option>
2296 <option value="full">full</option>
2297 <option value="native">native</option>
2298 <option value="runinfo">runinfo</option>
2299 <option value="uid">uid</option>
2300 <option value="url">url</option>
2301 <option value="xml">xml</option>
2302 </param>
2303 <when value="">
2304 <param name="mode" type="select" label="Mode" argument="-mode">
2305 <option value="">None</option>
2306 </param>
2307 </when>
2308 <when value="docsum">
2309 <param name="mode" type="select" label="Mode" argument="-mode">
2310 <option value="">None</option>
2311 <option value="json">json</option>
2312 </param>
2313 </when>
2314 <when value="full">
2315 <param name="mode" type="select" label="Mode" argument="-mode">
2316 <option value="">None</option>
2317 </param>
2318 </when>
2319 <when value="native">
2320 <param name="mode" type="select" label="Mode" argument="-mode">
2321 <option value="">None</option>
2322 <option value="xml">xml</option>
2323 </param>
2324 </when>
2325 <when value="runinfo">
2326 <param name="mode" type="select" label="Mode" argument="-mode">
2327 <option value="">None</option>
2328 <option value="xml">xml</option>
2329 </param>
2330 </when>
2331 <when value="uid">
2332 <param name="mode" type="select" label="Mode" argument="-mode">
2333 <option value="">None</option>
2334 </param>
2335 </when>
2336 <when value="url">
2337 <param name="mode" type="select" label="Mode" argument="-mode">
2338 <option value="">None</option>
2339 </param>
2340 </when>
2341 <when value="xml">
2342 <param name="mode" type="select" label="Mode" argument="-mode">
2343 <option value="">None</option>
2344 </param>
2345 </when>
2346 </conditional>
2347 </when>
2348 <when value="structure">
2349 <conditional name="format">
2350 <param name="format" type="select" label="Format" argument="-format">
2351 <option value="">None</option>
2352 <option value="docsum">docsum</option>
2353 <option value="full">full</option>
2354 <option value="mmdb">mmdb</option>
2355 <option value="native">native</option>
2356 <option value="uid">uid</option>
2357 <option value="url">url</option>
2358 <option value="xml">xml</option>
2359 </param>
2360 <when value="">
2361 <param name="mode" type="select" label="Mode" argument="-mode">
2362 <option value="">None</option>
2363 </param>
2364 </when>
2365 <when value="docsum">
2366 <param name="mode" type="select" label="Mode" argument="-mode">
2367 <option value="">None</option>
2368 <option value="json">json</option>
2369 </param>
2370 </when>
2371 <when value="full">
2372 <param name="mode" type="select" label="Mode" argument="-mode">
2373 <option value="">None</option>
2374 </param>
2375 </when>
2376 <when value="mmdb">
2377 <param name="mode" type="select" label="Mode" argument="-mode">
2378 <option value="">None</option>
2379 </param>
2380 </when>
2381 <when value="native">
2382 <param name="mode" type="select" label="Mode" argument="-mode">
2383 <option value="">None</option>
2384 <option value="xml">xml</option>
2385 </param>
2386 </when>
2387 <when value="uid">
2388 <param name="mode" type="select" label="Mode" argument="-mode">
2389 <option value="">None</option>
2390 </param>
2391 </when>
2392 <when value="url">
2393 <param name="mode" type="select" label="Mode" argument="-mode">
2394 <option value="">None</option>
2395 </param>
2396 </when>
2397 <when value="xml">
2398 <param name="mode" type="select" label="Mode" argument="-mode">
2399 <option value="">None</option>
2400 </param>
2401 </when>
2402 </conditional>
2403 </when>
2404 <when value="taxonomy">
2405 <conditional name="format">
2406 <param name="format" type="select" label="Format" argument="-format">
2407 <option value="">None</option>
2408 <option value="docsum">docsum</option>
2409 <option value="full">full</option>
2410 <option value="native">native</option>
2411 <option value="uid">uid</option>
2412 <option value="url">url</option>
2413 <option value="xml">xml</option>
2414 </param>
2415 <when value="">
2416 <param name="mode" type="select" label="Mode" argument="-mode">
2417 <option value="">None</option>
2418 </param>
2419 </when>
2420 <when value="docsum">
2421 <param name="mode" type="select" label="Mode" argument="-mode">
2422 <option value="">None</option>
2423 <option value="json">json</option>
2424 </param>
2425 </when>
2426 <when value="full">
2427 <param name="mode" type="select" label="Mode" argument="-mode">
2428 <option value="">None</option>
2429 </param>
2430 </when>
2431 <when value="native">
2432 <param name="mode" type="select" label="Mode" argument="-mode">
2433 <option value="">None</option>
2434 <option value="xml">xml</option>
2435 </param>
2436 </when>
2437 <when value="uid">
2438 <param name="mode" type="select" label="Mode" argument="-mode">
2439 <option value="">None</option>
2440 </param>
2441 </when>
2442 <when value="url">
2443 <param name="mode" type="select" label="Mode" argument="-mode">
2444 <option value="">None</option>
2445 </param>
2446 </when>
2447 <when value="xml">
2448 <param name="mode" type="select" label="Mode" argument="-mode">
2449 <option value="">None</option>
2450 </param>
2451 </when>
2452 </conditional>
2453 </when>
2454 <when value="unigene">
2455 <conditional name="format">
2456 <param name="format" type="select" label="Format" argument="-format">
2457 <option value="">None</option>
2458 <option value="docsum">docsum</option>
2459 <option value="full">full</option>
2460 <option value="uid">uid</option>
2461 <option value="url">url</option>
2462 <option value="xml">xml</option>
2463 </param>
2464 <when value="">
2465 <param name="mode" type="select" label="Mode" argument="-mode">
2466 <option value="">None</option>
2467 </param>
2468 </when>
2469 <when value="docsum">
2470 <param name="mode" type="select" label="Mode" argument="-mode">
2471 <option value="">None</option>
2472 <option value="json">json</option>
2473 </param>
2474 </when>
2475 <when value="full">
2476 <param name="mode" type="select" label="Mode" argument="-mode">
2477 <option value="">None</option>
2478 </param>
2479 </when>
2480 <when value="uid">
2481 <param name="mode" type="select" label="Mode" argument="-mode">
2482 <option value="">None</option>
2483 </param>
2484 </when>
2485 <when value="url">
2486 <param name="mode" type="select" label="Mode" argument="-mode">
2487 <option value="">None</option>
2488 </param>
2489 </when>
2490 <when value="xml">
2491 <param name="mode" type="select" label="Mode" argument="-mode">
2492 <option value="">None</option>
2493 </param>
2494 </when>
2495 </conditional>
2496 </when>
2497 <when value="">
2498 <param name="db_manual" type="text" label="Database" argument="-db"/>
2499 <param name="format" type="text" label="Format" argument="-format"/>
2500 <param name="mode" type="text" label="Mode" argument="-mode"/>
2501 </when>
2502 </conditional>
2503
2504
2505
2506
2507 <section name="ranges" title="Set Ranges" expanded="False">
2508 <param label="Seq Start" name="seq_start" type="integer" optional="True" min="0" argument="-seq_start"/>
2509 <param label="Seq End" name="seq_stop" type="integer" optional="True" min="0" argument="-seq_stop"/>
2510 <param label="strand" name="strand" type="text" argument="-strand"/>
2511 <param label="Complexity" name="complexity" type="integer" optional="True" min="0" argument="-complexity"/>
2512 <param label="Chr Start" name="chr_start" type="integer" optional="True" min="0" argument="-chr_start"/>
2513 <param label="Chr End" name="chr_stop" type="integer" optional="True" min="0" argument="-chr_stop"/>
2514 </section>
2515 </inputs>
2516 <outputs>
2517 <data format="txt" name="output_result">
2518 <change_format>
2519 <when input="db.format" value="xml" format="xml"/>
2520 <when input="db.format.mode" value="xml" format="xml"/>
2521 <when input="db.format.mode" value="json" format="json"/>
2522 <when input="db.format" value="tabular" format="tabular"/>
2523 <when input="db.format" value="fasta" format="fasta"/>
2524 <when input="db.format" value="fasta_cds_aa" format="fasta"/>
2525 <when input="db.format" value="fasta_cds_na" format="fasta"/>
2526 <when input="db.format" value="gene_fasta" format="fasta"/>
2527 </change_format>
2528 </data>
2529 </outputs>
2530 <tests>
2531 <test>
2532 <param name="db|db" value=""/>
2533 <param name="db|db_manual" value="sra"/>
2534 <param name="db|format" value="runinfo"/>
2535 <param name="query|source" value="id"/>
2536 <param name="query|id" value="SRX8542266"/>
2537 <output name="output_result">
2538 <assert_contents>
2539 <has_text_matching expression="Run" />
2540 </assert_contents>
2541 </output>
2542 </test>
2543 </tests>
2544 <help><![CDATA[
2545 NCBI Entrez EFetch
2546 ==================
2547
2548 Responds to a list of UIDs in a given database with the corresponding data
2549 records in a specified format.
2550
2551 Example Queries
2552 ---------------
2553
2554 Fetch PMIDs 17284678 and 9997 as text abstracts:
2555
2556 +----------------------+--------------------------------------+
2557 | Parameter | Value |
2558 +======================+======================================+
2559 | NCBI Database to Use | PubMed |
2560 +----------------------+--------------------------------------+
2561 | ID List | 17284678 9997 |
2562 +----------------------+--------------------------------------+
2563 | Output Format | Abstract |
2564 +----------------------+--------------------------------------+
2565
2566 Fetch FASTA for a transcript and its protein product (GIs 312836839 and 34577063)
2567
2568 +----------------------+--------------------------------------+
2569 | Parameter | Value |
2570 +======================+======================================+
2571 | NCBI Database to Use | Protein |
2572 +----------------------+--------------------------------------+
2573 | ID List | 312836839 34577063 |
2574 +----------------------+--------------------------------------+
2575 | Output Format | Fasta |
2576 +----------------------+--------------------------------------+
2577
2578 @DISCLAIMER@
2579 ]]></help>
2580 <expand macro="citations"/>
2581 </tool>