Mercurial > repos > iuc > ncbi_entrez_direct_efetch
changeset 2:59dfa639e78e draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 1bd7defa5ac7ea1e619c519d719f5bd10452339b
| author | iuc |
|---|---|
| date | Sat, 18 May 2024 20:23:07 +0000 |
| parents | 4d0b8d9aee09 |
| children | cc652cd06b0c |
| files | efetch.xml macros.xml |
| diffstat | 2 files changed, 2445 insertions(+), 2450 deletions(-) [+] |
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line diff
--- a/efetch.xml Sat Dec 17 20:44:47 2022 +0000 +++ b/efetch.xml Sat May 18 20:23:07 2024 +0000 @@ -1,11 +1,11 @@ <tool id="ncbi_entrez_direct_efetch" name="NCBI EFetch" version="@TOOL_VERSION@"> - <description>fetch records from NCBI</description> - <macros> - <import>macros.xml</import> - </macros> - <expand macro="requirements"/> - <version_command>efetch -version</version_command> - <command detect_errors="exit_code"><![CDATA[ + <description>fetch records from NCBI</description> + <macros> + <import>macros.xml</import> + </macros> + <expand macro="requirements"/> + <version_command>efetch -version</version_command> + <command detect_errors="exit_code"><![CDATA[ @ECONTACT@ efetch #if str( $db.db ) == "": @@ -55,2493 +55,2488 @@ > '${output_result}' ]]> </command> - <inputs> - <conditional name="query"> - <param name="source" type="select" label="Select query source"> - <option value="history">NCBI WebEnv History</option> - <option value="id">Direct Entry</option> - </param> - <when value="history"> - <param label="Input File" name="input_file" type="data" format="xml"/> - </when> - <when value="id"> - <param label="Query ID" name="id" type="text" argument="-id"/> - </when> - </conditional> - -<conditional name="db"> - <param name="db" type="select" label="Database" argument="-db"> - <option value="annotinfo">annotinfo</option> - <option value="assembly">assembly</option> - <option value="bioproject">bioproject</option> - <option value="biosample">biosample</option> - <option value="biosystems">biosystems</option> - <option value="blastdbinfo">blastdbinfo</option> - <option value="books">books</option> - <option value="cdd">cdd</option> - <option value="clinvar">clinvar</option> - <option value="clone">clone</option> - <option value="dbvar">dbvar</option> - <option value="gap">gap</option> - <option value="gapplus">gapplus</option> - <option value="gds">gds</option> - <option value="gencoll">gencoll</option> - <option value="gene">gene</option> - <option value="genome">genome</option> - <option value="geoprofiles">geoprofiles</option> - <option value="grasp">grasp</option> - <option value="gtr">gtr</option> - <option value="homologene">homologene</option> - <option value="medgen">medgen</option> - <option value="mesh">mesh</option> - <option value="ncbisearch">ncbisearch</option> - <option value="nlmcatalog">nlmcatalog</option> - <option value="nuccore">nuccore</option> - <option value="nucest">nucest</option> - <option value="nucgss">nucgss</option> - <option value="nucleotide">nucleotide</option> - <option value="omim">omim</option> - <option value="orgtrack">orgtrack</option> - <option value="pcassay">pcassay</option> - <option value="pccompound">pccompound</option> - <option value="pcsubstance">pcsubstance</option> - <option value="pmc">pmc</option> - <option value="popset">popset</option> - <option value="probe">probe</option> - <option value="protein">protein</option> - <option value="proteinclusters">proteinclusters</option> - <option value="pubmed">pubmed</option> - <option value="pubmedhealth">pubmedhealth</option> - <option value="seqannot">seqannot</option> - <option value="sequences">sequences</option> - <option value="snp">snp</option> - <option value="sra">sra</option> - <option value="structure">structure</option> - <option value="taxonomy">taxonomy</option> - <option value="unigene">unigene</option> - <option value="">Manual Entry</option> - </param> - <when value="annotinfo"> - <conditional name="format"> - <param name="format" type="select" label="Format" argument="-format"> - <option value="">None</option> - <option value="docsum">docsum</option> - <option value="full">full</option> - <option value="uid">uid</option> - <option value="url">url</option> - <option value="xml">xml</option> - </param> - <when value=""> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="docsum"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="json">json</option> - </param> - </when> - <when value="full"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="uid"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="url"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="xml"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - </conditional> - </when> - <when value="assembly"> - <conditional name="format"> - <param name="format" type="select" label="Format" argument="-format"> - <option value="">None</option> - <option value="docsum">docsum</option> - <option value="full">full</option> - <option value="uid">uid</option> - <option value="url">url</option> - <option value="xml">xml</option> - </param> - <when value=""> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="docsum"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="json">json</option> - </param> - </when> - <when value="full"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="uid"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="url"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="xml"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - </conditional> - </when> - <when value="bioproject"> - <conditional name="format"> - <param name="format" type="select" label="Format" argument="-format"> - <option value="">None</option> - <option value="docsum">docsum</option> - <option value="full">full</option> - <option value="native">native</option> - <option value="uid">uid</option> - <option value="url">url</option> - <option value="xml">xml</option> - </param> - <when value=""> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="docsum"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="json">json</option> - </param> - </when> - <when value="full"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="native"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="xml">xml</option> - </param> - </when> - <when value="uid"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="url"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="xml"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - </conditional> - </when> - <when value="biosample"> - <conditional name="format"> - <param name="format" type="select" label="Format" argument="-format"> - <option value="">None</option> - <option value="docsum">docsum</option> - <option value="full">full</option> - <option value="native">native</option> - <option value="uid">uid</option> - <option value="url">url</option> - <option value="xml">xml</option> - </param> - <when value=""> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="docsum"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="json">json</option> - </param> - </when> - <when value="full"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="native"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="xml">xml</option> - </param> - </when> - <when value="uid"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="url"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="xml"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - </conditional> - </when> - <when value="biosystems"> - <conditional name="format"> - <param name="format" type="select" label="Format" argument="-format"> - <option value="">None</option> - <option value="docsum">docsum</option> - <option value="full">full</option> - <option value="native">native</option> - <option value="uid">uid</option> - <option value="url">url</option> - <option value="xml">xml</option> - </param> - <when value=""> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="docsum"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="json">json</option> - </param> - </when> - <when value="full"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="native"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="xml">xml</option> - </param> - </when> - <when value="uid"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="url"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="xml"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - </conditional> - </when> - <when value="blastdbinfo"> - <conditional name="format"> - <param name="format" type="select" label="Format" argument="-format"> - <option value="">None</option> - <option value="docsum">docsum</option> - <option value="full">full</option> - <option value="uid">uid</option> - <option value="url">url</option> - <option value="xml">xml</option> - </param> - <when value=""> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="docsum"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="json">json</option> - </param> - </when> - <when value="full"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="uid"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="url"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="xml"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - </conditional> - </when> - <when value="books"> - <conditional name="format"> - <param name="format" type="select" label="Format" argument="-format"> - <option value="">None</option> - <option value="docsum">docsum</option> - <option value="full">full</option> - <option value="uid">uid</option> - <option value="url">url</option> - <option value="xml">xml</option> - </param> - <when value=""> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="docsum"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="json">json</option> - </param> - </when> - <when value="full"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="uid"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="url"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="xml"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - </conditional> - </when> - <when value="cdd"> - <conditional name="format"> - <param name="format" type="select" label="Format" argument="-format"> - <option value="">None</option> - <option value="docsum">docsum</option> - <option value="full">full</option> - <option value="uid">uid</option> - <option value="url">url</option> - <option value="xml">xml</option> - </param> - <when value=""> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="docsum"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="json">json</option> - </param> - </when> - <when value="full"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="uid"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="url"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="xml"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - </conditional> - </when> - <when value="clinvar"> - <conditional name="format"> - <param name="format" type="select" label="Format" argument="-format"> - <option value="">None</option> - <option value="docsum">docsum</option> - <option value="full">full</option> - <option value="uid">uid</option> - <option value="url">url</option> - <option value="xml">xml</option> - </param> - <when value=""> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="docsum"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="json">json</option> - </param> - </when> - <when value="full"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="uid"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="url"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="xml"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - </conditional> - </when> - <when value="clone"> - <conditional name="format"> - <param name="format" type="select" label="Format" argument="-format"> - <option value="">None</option> - <option value="docsum">docsum</option> - <option value="full">full</option> - <option value="uid">uid</option> - <option value="url">url</option> - <option value="xml">xml</option> - </param> - <when value=""> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="docsum"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="json">json</option> - </param> - </when> - <when value="full"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="uid"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="url"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="xml"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - </conditional> - </when> - <when value="dbvar"> - <conditional name="format"> - <param name="format" type="select" label="Format" argument="-format"> - <option value="">None</option> - <option value="docsum">docsum</option> - <option value="full">full</option> - <option value="uid">uid</option> - <option value="url">url</option> - <option value="xml">xml</option> - </param> - <when value=""> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="docsum"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="json">json</option> - </param> - </when> - <when value="full"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="uid"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="url"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="xml"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - </conditional> - </when> - <when value="gap"> - <conditional name="format"> - <param name="format" type="select" label="Format" argument="-format"> - <option value="">None</option> - <option value="docsum">docsum</option> - <option value="full">full</option> - <option value="uid">uid</option> - <option value="url">url</option> - <option value="xml">xml</option> - </param> - <when value=""> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="docsum"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="json">json</option> - </param> - </when> - <when value="full"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="uid"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="url"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="xml"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - </conditional> - </when> - <when value="gapplus"> - <conditional name="format"> - <param name="format" type="select" label="Format" argument="-format"> - <option value="">None</option> - <option value="docsum">docsum</option> - <option value="full">full</option> - <option value="uid">uid</option> - <option value="url">url</option> - <option value="xml">xml</option> + <inputs> + <conditional name="query"> + <param name="source" type="select" label="Select query source"> + <option value="history">NCBI WebEnv History</option> + <option value="id">Direct Entry</option> </param> - <when value=""> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="docsum"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="json">json</option> - </param> - </when> - <when value="full"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="uid"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="url"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="xml"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - </conditional> - </when> - <when value="gds"> - <conditional name="format"> - <param name="format" type="select" label="Format" argument="-format"> - <option value="">None</option> - <option value="docsum">docsum</option> - <option value="full">full</option> - <option value="native">native</option> - <option value="summary">summary</option> - <option value="uid">uid</option> - <option value="url">url</option> - <option value="xml">xml</option> - </param> - <when value=""> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="docsum"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="json">json</option> - </param> - </when> - <when value="full"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="native"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="xml">xml</option> - </param> - </when> - <when value="summary"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="uid"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="url"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="xml"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - </conditional> - </when> - <when value="gencoll"> - <conditional name="format"> - <param name="format" type="select" label="Format" argument="-format"> - <option value="">None</option> - <option value="docsum">docsum</option> - <option value="full">full</option> - <option value="uid">uid</option> - <option value="url">url</option> - <option value="xml">xml</option> - </param> - <when value=""> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="docsum"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="json">json</option> - </param> - </when> - <when value="full"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="uid"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="url"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="xml"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - </conditional> - </when> - <when value="gene"> - <conditional name="format"> - <param name="format" type="select" label="Format" argument="-format"> - <option value="">None</option> - <option value="docsum">docsum</option> - <option value="full">full</option> - <option value="gene_table">gene_table</option> - <option value="native">native</option> - <option value="tabular">tabular</option> - <option value="uid">uid</option> - <option value="url">url</option> - <option value="xml">xml</option> - </param> - <when value=""> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="docsum"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="json">json</option> - </param> - </when> - <when value="full"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="gene_table"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="native"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="asn.1">asn.1</option> - <option value="xml">xml</option> - </param> - </when> - <when value="tabular"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="uid"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="url"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="xml"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - </conditional> - </when> - <when value="genome"> - <conditional name="format"> - <param name="format" type="select" label="Format" argument="-format"> - <option value="">None</option> - <option value="docsum">docsum</option> - <option value="full">full</option> - <option value="uid">uid</option> - <option value="url">url</option> - <option value="xml">xml</option> - </param> - <when value=""> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="docsum"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="json">json</option> - </param> - </when> - <when value="full"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="uid"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="url"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="xml"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - </conditional> - </when> - <when value="geoprofiles"> - <conditional name="format"> - <param name="format" type="select" label="Format" argument="-format"> - <option value="">None</option> - <option value="docsum">docsum</option> - <option value="full">full</option> - <option value="uid">uid</option> - <option value="url">url</option> - <option value="xml">xml</option> - </param> - <when value=""> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="docsum"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="json">json</option> - </param> - </when> - <when value="full"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="uid"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="url"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="xml"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - </conditional> - </when> - <when value="grasp"> - <conditional name="format"> - <param name="format" type="select" label="Format" argument="-format"> - <option value="">None</option> - <option value="docsum">docsum</option> - <option value="full">full</option> - <option value="uid">uid</option> - <option value="url">url</option> - <option value="xml">xml</option> - </param> - <when value=""> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="docsum"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="json">json</option> - </param> - </when> - <when value="full"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> + <when value="history"> + <param name="input_file" type="data" format="xml" label="Input File"/> </when> - <when value="uid"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="url"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="xml"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - </conditional> - </when> - <when value="gtr"> - <conditional name="format"> - <param name="format" type="select" label="Format" argument="-format"> - <option value="">None</option> - <option value="docsum">docsum</option> - <option value="full">full</option> - <option value="uid">uid</option> - <option value="url">url</option> - <option value="xml">xml</option> - </param> - <when value=""> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="docsum"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="json">json</option> - </param> - </when> - <when value="full"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="uid"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="url"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="xml"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - </conditional> - </when> - <when value="homologene"> - <conditional name="format"> - <param name="format" type="select" label="Format" argument="-format"> - <option value="">None</option> - <option value="alignmentscores">alignmentscores</option> - <option value="docsum">docsum</option> - <option value="fasta">fasta</option> - <option value="full">full</option> - <option value="homologene">homologene</option> - <option value="native">native</option> - <option value="uid">uid</option> - <option value="url">url</option> - <option value="xml">xml</option> - </param> - <when value=""> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="alignmentscores"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="docsum"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="json">json</option> - </param> - </when> - <when value="fasta"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="full"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="homologene"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="native"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="asn.1">asn.1</option> - <option value="xml">xml</option> - </param> - </when> - <when value="uid"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="url"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="xml"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - </conditional> - </when> - <when value="medgen"> - <conditional name="format"> - <param name="format" type="select" label="Format" argument="-format"> - <option value="">None</option> - <option value="docsum">docsum</option> - <option value="full">full</option> - <option value="uid">uid</option> - <option value="url">url</option> - <option value="xml">xml</option> - </param> - <when value=""> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="docsum"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="json">json</option> - </param> - </when> - <when value="full"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="uid"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="url"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="xml"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - </conditional> - </when> - <when value="mesh"> - <conditional name="format"> - <param name="format" type="select" label="Format" argument="-format"> - <option value="">None</option> - <option value="docsum">docsum</option> - <option value="full">full</option> - <option value="native">native</option> - <option value="uid">uid</option> - <option value="url">url</option> - <option value="xml">xml</option> - </param> - <when value=""> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="docsum"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="json">json</option> - </param> - </when> - <when value="full"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="native"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="xml">xml</option> - </param> - </when> - <when value="uid"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="url"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="xml"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - </conditional> - </when> - <when value="ncbisearch"> - <conditional name="format"> - <param name="format" type="select" label="Format" argument="-format"> - <option value="">None</option> - <option value="docsum">docsum</option> - <option value="full">full</option> - <option value="uid">uid</option> - <option value="url">url</option> - <option value="xml">xml</option> - </param> - <when value=""> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="docsum"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="json">json</option> - </param> - </when> - <when value="full"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="uid"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="url"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="xml"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - </conditional> - </when> - <when value="nlmcatalog"> - <conditional name="format"> - <param name="format" type="select" label="Format" argument="-format"> - <option value="">None</option> - <option value="docsum">docsum</option> - <option value="full">full</option> - <option value="native">native</option> - <option value="uid">uid</option> - <option value="url">url</option> - <option value="xml">xml</option> - </param> - <when value=""> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="docsum"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="json">json</option> - </param> - </when> - <when value="full"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="native"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="xml">xml</option> - </param> - </when> - <when value="uid"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="url"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="xml"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> + <when value="id"> + <param argument="-id" type="text" label="Query ID"/> </when> </conditional> - </when> - <when value="nuccore"> - <conditional name="format"> - <param name="format" type="select" label="Format" argument="-format"> - <option value="">None</option> - <option value="docsum">docsum</option> - <option value="full">full</option> - <option value="uid">uid</option> - <option value="url">url</option> - <option value="xml">xml</option> + <conditional name="db"> + <param argument="-db" type="select" label="Database"> + <option value="annotinfo">annotinfo</option> + <option value="assembly">assembly</option> + <option value="bioproject">bioproject</option> + <option value="biosample">biosample</option> + <option value="biosystems">biosystems</option> + <option value="blastdbinfo">blastdbinfo</option> + <option value="books">books</option> + <option value="cdd">cdd</option> + <option value="clinvar">clinvar</option> + <option value="clone">clone</option> + <option value="dbvar">dbvar</option> + <option value="gap">gap</option> + <option value="gapplus">gapplus</option> + <option value="gds">gds</option> + <option value="gencoll">gencoll</option> + <option value="gene">gene</option> + <option value="genome">genome</option> + <option value="geoprofiles">geoprofiles</option> + <option value="grasp">grasp</option> + <option value="gtr">gtr</option> + <option value="homologene">homologene</option> + <option value="medgen">medgen</option> + <option value="mesh">mesh</option> + <option value="ncbisearch">ncbisearch</option> + <option value="nlmcatalog">nlmcatalog</option> + <option value="nuccore">nuccore</option> + <option value="nucest">nucest</option> + <option value="nucgss">nucgss</option> + <option value="nucleotide">nucleotide</option> + <option value="omim">omim</option> + <option value="orgtrack">orgtrack</option> + <option value="pcassay">pcassay</option> + <option value="pccompound">pccompound</option> + <option value="pcsubstance">pcsubstance</option> + <option value="pmc">pmc</option> + <option value="popset">popset</option> + <option value="probe">probe</option> + <option value="protein">protein</option> + <option value="proteinclusters">proteinclusters</option> + <option value="pubmed">pubmed</option> + <option value="pubmedhealth">pubmedhealth</option> + <option value="seqannot">seqannot</option> + <option value="sequences">sequences</option> + <option value="snp">snp</option> + <option value="sra">sra</option> + <option value="structure">structure</option> + <option value="taxonomy">taxonomy</option> + <option value="unigene">unigene</option> + <option value="">Manual Entry</option> </param> - <when value=""> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="docsum"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="json">json</option> - </param> - </when> - <when value="full"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="uid"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> + <when value="annotinfo"> + <conditional name="format"> + <param argument="-format" type="select" label="Format"> + <option value="">None</option> + <option value="docsum">docsum</option> + <option value="full">full</option> + <option value="uid">uid</option> + <option value="url">url</option> + <option value="xml">xml</option> + </param> + <when value=""> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="docsum"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="json">json</option> + </param> + </when> + <when value="full"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="uid"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="url"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="xml"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + </conditional> </when> - <when value="url"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="xml"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> + <when value="assembly"> + <conditional name="format"> + <param argument="-format" type="select" label="Format"> + <option value="">None</option> + <option value="docsum">docsum</option> + <option value="full">full</option> + <option value="uid">uid</option> + <option value="url">url</option> + <option value="xml">xml</option> + </param> + <when value=""> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="docsum"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="json">json</option> + </param> + </when> + <when value="full"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="uid"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="url"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="xml"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + </conditional> </when> - </conditional> - </when> - <when value="nucest"> - <conditional name="format"> - <param name="format" type="select" label="Format" argument="-format"> - <option value="">None</option> - <option value="docsum">docsum</option> - <option value="full">full</option> - <option value="uid">uid</option> - <option value="url">url</option> - <option value="xml">xml</option> - </param> - <when value=""> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> + <when value="bioproject"> + <conditional name="format"> + <param argument="-format" type="select" label="Format"> + <option value="">None</option> + <option value="docsum">docsum</option> + <option value="full">full</option> + <option value="native">native</option> + <option value="uid">uid</option> + <option value="url">url</option> + <option value="xml">xml</option> + </param> + <when value=""> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="docsum"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="json">json</option> + </param> + </when> + <when value="full"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="native"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="xml">xml</option> + </param> + </when> + <when value="uid"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="url"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="xml"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + </conditional> </when> - <when value="docsum"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="json">json</option> - </param> - </when> - <when value="full"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> + <when value="biosample"> + <conditional name="format"> + <param argument="-format" type="select" label="Format"> + <option value="">None</option> + <option value="docsum">docsum</option> + <option value="full">full</option> + <option value="native">native</option> + <option value="uid">uid</option> + <option value="url">url</option> + <option value="xml">xml</option> + </param> + <when value=""> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="docsum"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="json">json</option> + </param> + </when> + <when value="full"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="native"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="xml">xml</option> + </param> + </when> + <when value="uid"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="url"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="xml"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + </conditional> </when> - <when value="uid"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="url"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="xml"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> + <when value="biosystems"> + <conditional name="format"> + <param argument="-format" type="select" label="Format"> + <option value="">None</option> + <option value="docsum">docsum</option> + <option value="full">full</option> + <option value="native">native</option> + <option value="uid">uid</option> + <option value="url">url</option> + <option value="xml">xml</option> + </param> + <when value=""> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="docsum"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="json">json</option> + </param> + </when> + <when value="full"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="native"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="xml">xml</option> + </param> + </when> + <when value="uid"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="url"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="xml"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + </conditional> </when> - </conditional> - </when> - <when value="nucgss"> - <conditional name="format"> - <param name="format" type="select" label="Format" argument="-format"> - <option value="">None</option> - <option value="docsum">docsum</option> - <option value="full">full</option> - <option value="uid">uid</option> - <option value="url">url</option> - <option value="xml">xml</option> - </param> - <when value=""> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> + <when value="blastdbinfo"> + <conditional name="format"> + <param argument="-format" type="select" label="Format"> + <option value="">None</option> + <option value="docsum">docsum</option> + <option value="full">full</option> + <option value="uid">uid</option> + <option value="url">url</option> + <option value="xml">xml</option> + </param> + <when value=""> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="docsum"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="json">json</option> + </param> + </when> + <when value="full"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="uid"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="url"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="xml"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + </conditional> + </when> + <when value="books"> + <conditional name="format"> + <param argument="-format" type="select" label="Format"> + <option value="">None</option> + <option value="docsum">docsum</option> + <option value="full">full</option> + <option value="uid">uid</option> + <option value="url">url</option> + <option value="xml">xml</option> + </param> + <when value=""> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="docsum"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="json">json</option> + </param> + </when> + <when value="full"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="uid"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="url"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="xml"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + </conditional> </when> - <when value="docsum"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="json">json</option> - </param> + <when value="cdd"> + <conditional name="format"> + <param argument="-format" type="select" label="Format"> + <option value="">None</option> + <option value="docsum">docsum</option> + <option value="full">full</option> + <option value="uid">uid</option> + <option value="url">url</option> + <option value="xml">xml</option> + </param> + <when value=""> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="docsum"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="json">json</option> + </param> + </when> + <when value="full"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="uid"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="url"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="xml"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + </conditional> </when> - <when value="full"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="uid"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="url"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> + <when value="clinvar"> + <conditional name="format"> + <param argument="-format" type="select" label="Format"> + <option value="">None</option> + <option value="docsum">docsum</option> + <option value="full">full</option> + <option value="uid">uid</option> + <option value="url">url</option> + <option value="xml">xml</option> + </param> + <when value=""> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="docsum"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="json">json</option> + </param> + </when> + <when value="full"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="uid"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="url"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="xml"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + </conditional> </when> - <when value="xml"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> + <when value="clone"> + <conditional name="format"> + <param argument="-format" type="select" label="Format"> + <option value="">None</option> + <option value="docsum">docsum</option> + <option value="full">full</option> + <option value="uid">uid</option> + <option value="url">url</option> + <option value="xml">xml</option> + </param> + <when value=""> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="docsum"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="json">json</option> + </param> + </when> + <when value="full"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="uid"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="url"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="xml"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + </conditional> </when> - </conditional> - </when> - <when value="nucleotide"> - <conditional name="format"> - <param name="format" type="select" label="Format" argument="-format"> - <option value="">None</option> - <option value="docsum">docsum</option> - <option value="full">full</option> - <option value="uid">uid</option> - <option value="url">url</option> - <option value="xml">xml</option> - </param> - <when value=""> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> + <when value="dbvar"> + <conditional name="format"> + <param argument="-format" type="select" label="Format"> + <option value="">None</option> + <option value="docsum">docsum</option> + <option value="full">full</option> + <option value="uid">uid</option> + <option value="url">url</option> + <option value="xml">xml</option> + </param> + <when value=""> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="docsum"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="json">json</option> + </param> + </when> + <when value="full"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="uid"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="url"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="xml"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + </conditional> </when> - <when value="docsum"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="json">json</option> - </param> - </when> - <when value="full"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> + <when value="gap"> + <conditional name="format"> + <param argument="-format" type="select" label="Format"> + <option value="">None</option> + <option value="docsum">docsum</option> + <option value="full">full</option> + <option value="uid">uid</option> + <option value="url">url</option> + <option value="xml">xml</option> + </param> + <when value=""> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="docsum"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="json">json</option> + </param> + </when> + <when value="full"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="uid"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="url"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="xml"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + </conditional> </when> - <when value="uid"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> + <when value="gapplus"> + <conditional name="format"> + <param argument="-format" type="select" label="Format"> + <option value="">None</option> + <option value="docsum">docsum</option> + <option value="full">full</option> + <option value="uid">uid</option> + <option value="url">url</option> + <option value="xml">xml</option> + </param> + <when value=""> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="docsum"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="json">json</option> + </param> + </when> + <when value="full"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="uid"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="url"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="xml"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + </conditional> </when> - <when value="url"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="xml"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> + <when value="gds"> + <conditional name="format"> + <param argument="-format" type="select" label="Format"> + <option value="">None</option> + <option value="docsum">docsum</option> + <option value="full">full</option> + <option value="native">native</option> + <option value="summary">summary</option> + <option value="uid">uid</option> + <option value="url">url</option> + <option value="xml">xml</option> + </param> + <when value=""> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="docsum"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="json">json</option> + </param> + </when> + <when value="full"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="native"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="xml">xml</option> + </param> + </when> + <when value="summary"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="uid"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="url"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="xml"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + </conditional> </when> - </conditional> - </when> - <when value="omim"> - <conditional name="format"> - <param name="format" type="select" label="Format" argument="-format"> - <option value="">None</option> - <option value="docsum">docsum</option> - <option value="full">full</option> - <option value="uid">uid</option> - <option value="url">url</option> - <option value="xml">xml</option> - </param> - <when value=""> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> + <when value="gencoll"> + <conditional name="format"> + <param argument="-format" type="select" label="Format"> + <option value="">None</option> + <option value="docsum">docsum</option> + <option value="full">full</option> + <option value="uid">uid</option> + <option value="url">url</option> + <option value="xml">xml</option> + </param> + <when value=""> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="docsum"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="json">json</option> + </param> + </when> + <when value="full"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="uid"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="url"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="xml"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + </conditional> </when> - <when value="docsum"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="json">json</option> - </param> - </when> - <when value="full"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> + <when value="gene"> + <conditional name="format"> + <param argument="-format" type="select" label="Format"> + <option value="">None</option> + <option value="docsum">docsum</option> + <option value="full">full</option> + <option value="gene_table">gene_table</option> + <option value="native">native</option> + <option value="tabular">tabular</option> + <option value="uid">uid</option> + <option value="url">url</option> + <option value="xml">xml</option> + </param> + <when value=""> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="docsum"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="json">json</option> + </param> + </when> + <when value="full"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="gene_table"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="native"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="asn.1">asn.1</option> + <option value="xml">xml</option> + </param> + </when> + <when value="tabular"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="uid"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="url"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="xml"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + </conditional> </when> - <when value="uid"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="url"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="xml"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> + <when value="genome"> + <conditional name="format"> + <param argument="-format" type="select" label="Format"> + <option value="">None</option> + <option value="docsum">docsum</option> + <option value="full">full</option> + <option value="uid">uid</option> + <option value="url">url</option> + <option value="xml">xml</option> + </param> + <when value=""> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="docsum"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="json">json</option> + </param> + </when> + <when value="full"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="uid"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="url"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="xml"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + </conditional> </when> - </conditional> - </when> - <when value="orgtrack"> - <conditional name="format"> - <param name="format" type="select" label="Format" argument="-format"> - <option value="">None</option> - <option value="docsum">docsum</option> - <option value="full">full</option> - <option value="uid">uid</option> - <option value="url">url</option> - <option value="xml">xml</option> - </param> - <when value=""> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> + <when value="geoprofiles"> + <conditional name="format"> + <param argument="-format" type="select" label="Format"> + <option value="">None</option> + <option value="docsum">docsum</option> + <option value="full">full</option> + <option value="uid">uid</option> + <option value="url">url</option> + <option value="xml">xml</option> + </param> + <when value=""> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="docsum"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="json">json</option> + </param> + </when> + <when value="full"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="uid"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="url"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="xml"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + </conditional> </when> - <when value="docsum"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="json">json</option> - </param> - </when> - <when value="full"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> + <when value="grasp"> + <conditional name="format"> + <param argument="-format" type="select" label="Format"> + <option value="">None</option> + <option value="docsum">docsum</option> + <option value="full">full</option> + <option value="uid">uid</option> + <option value="url">url</option> + <option value="xml">xml</option> + </param> + <when value=""> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="docsum"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="json">json</option> + </param> + </when> + <when value="full"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="uid"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="url"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="xml"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + </conditional> </when> - <when value="uid"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="url"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="xml"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> + <when value="gtr"> + <conditional name="format"> + <param argument="-format" type="select" label="Format"> + <option value="">None</option> + <option value="docsum">docsum</option> + <option value="full">full</option> + <option value="uid">uid</option> + <option value="url">url</option> + <option value="xml">xml</option> + </param> + <when value=""> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="docsum"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="json">json</option> + </param> + </when> + <when value="full"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="uid"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="url"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="xml"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + </conditional> </when> - </conditional> - </when> - <when value="pcassay"> - <conditional name="format"> - <param name="format" type="select" label="Format" argument="-format"> - <option value="">None</option> - <option value="docsum">docsum</option> - <option value="full">full</option> - <option value="uid">uid</option> - <option value="url">url</option> - <option value="xml">xml</option> - </param> - <when value=""> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> + <when value="homologene"> + <conditional name="format"> + <param argument="-format" type="select" label="Format"> + <option value="">None</option> + <option value="alignmentscores">alignmentscores</option> + <option value="docsum">docsum</option> + <option value="fasta">fasta</option> + <option value="full">full</option> + <option value="homologene">homologene</option> + <option value="native">native</option> + <option value="uid">uid</option> + <option value="url">url</option> + <option value="xml">xml</option> + </param> + <when value=""> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="alignmentscores"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="docsum"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="json">json</option> + </param> + </when> + <when value="fasta"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="full"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="homologene"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="native"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="asn.1">asn.1</option> + <option value="xml">xml</option> + </param> + </when> + <when value="uid"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="url"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="xml"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + </conditional> </when> - <when value="docsum"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="json">json</option> - </param> - </when> - <when value="full"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> + <when value="medgen"> + <conditional name="format"> + <param argument="-format" type="select" label="Format"> + <option value="">None</option> + <option value="docsum">docsum</option> + <option value="full">full</option> + <option value="uid">uid</option> + <option value="url">url</option> + <option value="xml">xml</option> + </param> + <when value=""> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="docsum"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="json">json</option> + </param> + </when> + <when value="full"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="uid"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="url"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="xml"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + </conditional> </when> - <when value="uid"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> + <when value="mesh"> + <conditional name="format"> + <param argument="-format" type="select" label="Format"> + <option value="">None</option> + <option value="docsum">docsum</option> + <option value="full">full</option> + <option value="native">native</option> + <option value="uid">uid</option> + <option value="url">url</option> + <option value="xml">xml</option> + </param> + <when value=""> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="docsum"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="json">json</option> + </param> + </when> + <when value="full"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="native"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="xml">xml</option> + </param> + </when> + <when value="uid"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="url"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="xml"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + </conditional> </when> - <when value="url"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="xml"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> + <when value="ncbisearch"> + <conditional name="format"> + <param argument="-format" type="select" label="Format"> + <option value="">None</option> + <option value="docsum">docsum</option> + <option value="full">full</option> + <option value="uid">uid</option> + <option value="url">url</option> + <option value="xml">xml</option> + </param> + <when value=""> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="docsum"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="json">json</option> + </param> + </when> + <when value="full"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="uid"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="url"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="xml"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + </conditional> </when> - </conditional> - </when> - <when value="pccompound"> - <conditional name="format"> - <param name="format" type="select" label="Format" argument="-format"> - <option value="">None</option> - <option value="docsum">docsum</option> - <option value="full">full</option> - <option value="uid">uid</option> - <option value="url">url</option> - <option value="xml">xml</option> - </param> - <when value=""> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> + <when value="nlmcatalog"> + <conditional name="format"> + <param argument="-format" type="select" label="Format"> + <option value="">None</option> + <option value="docsum">docsum</option> + <option value="full">full</option> + <option value="native">native</option> + <option value="uid">uid</option> + <option value="url">url</option> + <option value="xml">xml</option> + </param> + <when value=""> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="docsum"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="json">json</option> + </param> + </when> + <when value="full"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="native"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="xml">xml</option> + </param> + </when> + <when value="uid"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="url"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="xml"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + </conditional> + </when> + <when value="nuccore"> + <conditional name="format"> + <param argument="-format" type="select" label="Format"> + <option value="">None</option> + <option value="docsum">docsum</option> + <option value="full">full</option> + <option value="uid">uid</option> + <option value="url">url</option> + <option value="xml">xml</option> + </param> + <when value=""> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="docsum"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="json">json</option> + </param> + </when> + <when value="full"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="uid"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="url"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="xml"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + </conditional> + </when> + <when value="nucest"> + <conditional name="format"> + <param argument="-format" type="select" label="Format"> + <option value="">None</option> + <option value="docsum">docsum</option> + <option value="full">full</option> + <option value="uid">uid</option> + <option value="url">url</option> + <option value="xml">xml</option> + </param> + <when value=""> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="docsum"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="json">json</option> + </param> + </when> + <when value="full"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="uid"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="url"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="xml"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + </conditional> </when> - <when value="docsum"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="json">json</option> - </param> + <when value="nucgss"> + <conditional name="format"> + <param argument="-format" type="select" label="Format"> + <option value="">None</option> + <option value="docsum">docsum</option> + <option value="full">full</option> + <option value="uid">uid</option> + <option value="url">url</option> + <option value="xml">xml</option> + </param> + <when value=""> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="docsum"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="json">json</option> + </param> + </when> + <when value="full"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="uid"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="url"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="xml"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + </conditional> + </when> + <when value="nucleotide"> + <conditional name="format"> + <param argument="-format" type="select" label="Format"> + <option value="">None</option> + <option value="docsum">docsum</option> + <option value="full">full</option> + <option value="uid">uid</option> + <option value="url">url</option> + <option value="xml">xml</option> + </param> + <when value=""> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="docsum"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="json">json</option> + </param> + </when> + <when value="full"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="uid"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="url"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="xml"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + </conditional> </when> - <when value="full"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> + <when value="omim"> + <conditional name="format"> + <param argument="-format" type="select" label="Format"> + <option value="">None</option> + <option value="docsum">docsum</option> + <option value="full">full</option> + <option value="uid">uid</option> + <option value="url">url</option> + <option value="xml">xml</option> + </param> + <when value=""> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="docsum"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="json">json</option> + </param> + </when> + <when value="full"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="uid"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="url"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="xml"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + </conditional> </when> - <when value="uid"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="url"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> + <when value="orgtrack"> + <conditional name="format"> + <param argument="-format" type="select" label="Format"> + <option value="">None</option> + <option value="docsum">docsum</option> + <option value="full">full</option> + <option value="uid">uid</option> + <option value="url">url</option> + <option value="xml">xml</option> + </param> + <when value=""> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="docsum"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="json">json</option> + </param> + </when> + <when value="full"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="uid"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="url"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="xml"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + </conditional> </when> - <when value="xml"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> + <when value="pcassay"> + <conditional name="format"> + <param argument="-format" type="select" label="Format"> + <option value="">None</option> + <option value="docsum">docsum</option> + <option value="full">full</option> + <option value="uid">uid</option> + <option value="url">url</option> + <option value="xml">xml</option> + </param> + <when value=""> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="docsum"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="json">json</option> + </param> + </when> + <when value="full"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="uid"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="url"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="xml"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + </conditional> + </when> + <when value="pccompound"> + <conditional name="format"> + <param argument="-format" type="select" label="Format"> + <option value="">None</option> + <option value="docsum">docsum</option> + <option value="full">full</option> + <option value="uid">uid</option> + <option value="url">url</option> + <option value="xml">xml</option> + </param> + <when value=""> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="docsum"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="json">json</option> + </param> + </when> + <when value="full"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="uid"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="url"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="xml"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + </conditional> + </when> + <when value="pcsubstance"> + <conditional name="format"> + <param argument="-format" type="select" label="Format"> + <option value="">None</option> + <option value="docsum">docsum</option> + <option value="full">full</option> + <option value="uid">uid</option> + <option value="url">url</option> + <option value="xml">xml</option> + </param> + <when value=""> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="docsum"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="json">json</option> + </param> + </when> + <when value="full"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="uid"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="url"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="xml"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + </conditional> </when> - </conditional> - </when> - <when value="pcsubstance"> - <conditional name="format"> - <param name="format" type="select" label="Format" argument="-format"> - <option value="">None</option> - <option value="docsum">docsum</option> - <option value="full">full</option> - <option value="uid">uid</option> - <option value="url">url</option> - <option value="xml">xml</option> - </param> - <when value=""> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> + <when value="pmc"> + <conditional name="format"> + <param argument="-format" type="select" label="Format"> + <option value="">None</option> + <option value="docsum">docsum</option> + <option value="full">full</option> + <option value="medline">medline</option> + <option value="native">native</option> + <option value="uid">uid</option> + <option value="url">url</option> + <option value="xml">xml</option> + </param> + <when value=""> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="docsum"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="json">json</option> + </param> + </when> + <when value="full"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="medline"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="native"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="xml">xml</option> + </param> + </when> + <when value="uid"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="url"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="xml"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + </conditional> </when> - <when value="docsum"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="json">json</option> - </param> + <when value="popset"> + <conditional name="format"> + <param argument="-format" type="select" label="Format"> + <option value="">None</option> + <option value="docsum">docsum</option> + <option value="full">full</option> + <option value="uid">uid</option> + <option value="url">url</option> + <option value="xml">xml</option> + </param> + <when value=""> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="docsum"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="json">json</option> + </param> + </when> + <when value="full"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="uid"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="url"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="xml"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + </conditional> </when> - <when value="full"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> + <when value="probe"> + <conditional name="format"> + <param argument="-format" type="select" label="Format"> + <option value="">None</option> + <option value="docsum">docsum</option> + <option value="full">full</option> + <option value="uid">uid</option> + <option value="url">url</option> + <option value="xml">xml</option> + </param> + <when value=""> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="docsum"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="json">json</option> + </param> + </when> + <when value="full"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="uid"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="url"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="xml"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + </conditional> </when> - <when value="uid"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> + <when value="protein"> + <conditional name="format"> + <param argument="-format" type="select" label="Format"> + <option value="">None</option> + <option value="docsum">docsum</option> + <option value="full">full</option> + <option value="uid">uid</option> + <option value="url">url</option> + <option value="xml">xml</option> + </param> + <when value=""> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="docsum"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="json">json</option> + </param> + </when> + <when value="full"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="uid"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="url"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="xml"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + </conditional> </when> - <when value="url"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="xml"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> + <when value="proteinclusters"> + <conditional name="format"> + <param argument="-format" type="select" label="Format"> + <option value="">None</option> + <option value="docsum">docsum</option> + <option value="full">full</option> + <option value="uid">uid</option> + <option value="url">url</option> + <option value="xml">xml</option> + </param> + <when value=""> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="docsum"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="json">json</option> + </param> + </when> + <when value="full"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="uid"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="url"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="xml"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + </conditional> </when> - </conditional> - </when> - <when value="pmc"> - <conditional name="format"> - <param name="format" type="select" label="Format" argument="-format"> - <option value="">None</option> - <option value="docsum">docsum</option> - <option value="full">full</option> - <option value="medline">medline</option> - <option value="native">native</option> - <option value="uid">uid</option> - <option value="url">url</option> - <option value="xml">xml</option> - </param> - <when value=""> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> + <when value="pubmed"> + <conditional name="format"> + <param argument="-format" type="select" label="Format"> + <option value="">None</option> + <option value="abstract">abstract</option> + <option value="docsum">docsum</option> + <option value="full">full</option> + <option value="medline">medline</option> + <option value="native">native</option> + <option value="uid">uid</option> + <option value="url">url</option> + <option value="xml">xml</option> + </param> + <when value=""> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="abstract"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="docsum"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="json">json</option> + </param> + </when> + <when value="full"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="medline"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="native"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="asn.1">asn.1</option> + <option value="xml">xml</option> + </param> + </when> + <when value="uid"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="url"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="xml"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + </conditional> </when> - <when value="docsum"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="json">json</option> - </param> + <when value="pubmedhealth"> + <conditional name="format"> + <param argument="-format" type="select" label="Format"> + <option value="">None</option> + <option value="docsum">docsum</option> + <option value="full">full</option> + <option value="uid">uid</option> + <option value="url">url</option> + <option value="xml">xml</option> + </param> + <when value=""> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="docsum"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="json">json</option> + </param> + </when> + <when value="full"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="uid"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="url"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="xml"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + </conditional> + </when> + <when value="seqannot"> + <conditional name="format"> + <param argument="-format" type="select" label="Format"> + <option value="">None</option> + <option value="docsum">docsum</option> + <option value="full">full</option> + <option value="uid">uid</option> + <option value="url">url</option> + <option value="xml">xml</option> + </param> + <when value=""> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="docsum"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="json">json</option> + </param> + </when> + <when value="full"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="uid"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="url"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="xml"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + </conditional> </when> - <when value="full"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="medline"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="native"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="xml">xml</option> - </param> - </when> - <when value="uid"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> + <when value="sequences"> + <conditional name="format"> + <param argument="-format" type="select" label="Format"> + <option value="">None</option> + <option value="acc">acc</option> + <option value="docsum">docsum</option> + <option value="est">est</option> + <option value="fasta">fasta</option> + <option value="fasta_cds_aa">fasta_cds_aa</option> + <option value="fasta_cds_na">fasta_cds_na</option> + <option value="ft">ft</option> + <option value="full">full</option> + <option value="gb">gb</option> + <option value="gbc">gbc</option> + <option value="gbwithparts">gbwithparts</option> + <option value="gene_fasta">gene_fasta</option> + <option value="gp">gp</option> + <option value="gpc">gpc</option> + <option value="gss">gss</option> + <option value="ipg">ipg</option> + <option value="native">native</option> + <option value="seqid">seqid</option> + <option value="uid">uid</option> + <option value="url">url</option> + <option value="xml">xml</option> + </param> + <when value=""> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="acc"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="docsum"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="json">json</option> + </param> + </when> + <when value="est"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="fasta"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="xml">xml</option> + </param> + </when> + <when value="fasta_cds_aa"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="fasta_cds_na"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="ft"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="full"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="gb"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="xml">xml</option> + </param> + </when> + <when value="gbc"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="xml">xml</option> + </param> + </when> + <when value="gbwithparts"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="gene_fasta"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="gp"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="xml">xml</option> + </param> + </when> + <when value="gpc"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="xml">xml</option> + </param> + </when> + <when value="gss"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="ipg"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="xml">xml</option> + </param> + </when> + <when value="native"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="text">text</option> + <option value="xml">xml</option> + </param> + </when> + <when value="seqid"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="uid"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="url"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="xml"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + </conditional> </when> - <when value="url"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> + <when value="snp"> + <conditional name="format"> + <param argument="-format" type="select" label="Format"> + <option value="">None</option> + <option value="chr">chr</option> + <option value="docset">docset</option> + <option value="docsum">docsum</option> + <option value="fasta">fasta</option> + <option value="flt">flt</option> + <option value="full">full</option> + <option value="native">native</option> + <option value="rsr">rsr</option> + <option value="ssexemplar">ssexemplar</option> + <option value="uid">uid</option> + <option value="url">url</option> + <option value="xml">xml</option> + </param> + <when value=""> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="chr"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="docset"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="docsum"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="json">json</option> + </param> + </when> + <when value="fasta"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="flt"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="full"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="native"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="asn.1">asn.1</option> + <option value="xml">xml</option> + </param> + </when> + <when value="rsr"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="ssexemplar"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="uid"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="url"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="xml"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + </conditional> </when> - <when value="xml"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> + <when value="sra"> + <conditional name="format"> + <param argument="-format" type="select" label="Format"> + <option value="">None</option> + <option value="docsum">docsum</option> + <option value="full">full</option> + <option value="native">native</option> + <option value="runinfo">runinfo</option> + <option value="uid">uid</option> + <option value="url">url</option> + <option value="xml">xml</option> + </param> + <when value=""> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="docsum"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="json">json</option> + </param> + </when> + <when value="full"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="native"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="xml">xml</option> + </param> + </when> + <when value="runinfo"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="xml">xml</option> + </param> + </when> + <when value="uid"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="url"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="xml"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + </conditional> </when> - </conditional> - </when> - <when value="popset"> - <conditional name="format"> - <param name="format" type="select" label="Format" argument="-format"> - <option value="">None</option> - <option value="docsum">docsum</option> - <option value="full">full</option> - <option value="uid">uid</option> - <option value="url">url</option> - <option value="xml">xml</option> - </param> + <when value="structure"> + <conditional name="format"> + <param argument="-format" type="select" label="Format"> + <option value="">None</option> + <option value="docsum">docsum</option> + <option value="full">full</option> + <option value="mmdb">mmdb</option> + <option value="native">native</option> + <option value="uid">uid</option> + <option value="url">url</option> + <option value="xml">xml</option> + </param> + <when value=""> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="docsum"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="json">json</option> + </param> + </when> + <when value="full"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="mmdb"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="native"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="xml">xml</option> + </param> + </when> + <when value="uid"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="url"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="xml"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + </conditional> + </when> + <when value="taxonomy"> + <conditional name="format"> + <param argument="-format" type="select" label="Format"> + <option value="">None</option> + <option value="docsum">docsum</option> + <option value="full">full</option> + <option value="native">native</option> + <option value="uid">uid</option> + <option value="url">url</option> + <option value="xml">xml</option> + </param> + <when value=""> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="docsum"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="json">json</option> + </param> + </when> + <when value="full"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="native"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="xml">xml</option> + </param> + </when> + <when value="uid"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="url"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="xml"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + </conditional> + </when> + <when value="unigene"> + <conditional name="format"> + <param argument="-format" type="select" label="Format"> + <option value="">None</option> + <option value="docsum">docsum</option> + <option value="full">full</option> + <option value="uid">uid</option> + <option value="url">url</option> + <option value="xml">xml</option> + </param> + <when value=""> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="docsum"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + <option value="json">json</option> + </param> + </when> + <when value="full"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="uid"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="url"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + <when value="xml"> + <param argument="-mode" type="select" label="Mode"> + <option value="">None</option> + </param> + </when> + </conditional> + </when> <when value=""> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="docsum"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="json">json</option> - </param> - </when> - <when value="full"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="uid"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="url"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="xml"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - </conditional> - </when> - <when value="probe"> - <conditional name="format"> - <param name="format" type="select" label="Format" argument="-format"> - <option value="">None</option> - <option value="docsum">docsum</option> - <option value="full">full</option> - <option value="uid">uid</option> - <option value="url">url</option> - <option value="xml">xml</option> - </param> - <when value=""> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="docsum"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="json">json</option> - </param> - </when> - <when value="full"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="uid"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="url"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="xml"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - </conditional> - </when> - <when value="protein"> - <conditional name="format"> - <param name="format" type="select" label="Format" argument="-format"> - <option value="">None</option> - <option value="docsum">docsum</option> - <option value="full">full</option> - <option value="uid">uid</option> - <option value="url">url</option> - <option value="xml">xml</option> - </param> - <when value=""> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="docsum"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="json">json</option> - </param> - </when> - <when value="full"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="uid"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="url"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="xml"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - </conditional> - </when> - <when value="proteinclusters"> - <conditional name="format"> - <param name="format" type="select" label="Format" argument="-format"> - <option value="">None</option> - <option value="docsum">docsum</option> - <option value="full">full</option> - <option value="uid">uid</option> - <option value="url">url</option> - <option value="xml">xml</option> - </param> - <when value=""> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="docsum"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="json">json</option> - </param> - </when> - <when value="full"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="uid"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="url"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="xml"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> + <param name="db_manual" argument="-db" type="text" label="Database"/> + <param argument="-format" type="text" label="Format"/> + <param argument="-mode" type="text" label="Mode"/> </when> </conditional> - </when> - <when value="pubmed"> - <conditional name="format"> - <param name="format" type="select" label="Format" argument="-format"> - <option value="">None</option> - <option value="abstract">abstract</option> - <option value="docsum">docsum</option> - <option value="full">full</option> - <option value="medline">medline</option> - <option value="native">native</option> - <option value="uid">uid</option> - <option value="url">url</option> - <option value="xml">xml</option> - </param> - <when value=""> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="abstract"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="docsum"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="json">json</option> - </param> - </when> - <when value="full"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="medline"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="native"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="asn.1">asn.1</option> - <option value="xml">xml</option> - </param> - </when> - <when value="uid"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="url"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="xml"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - </conditional> - </when> - <when value="pubmedhealth"> - <conditional name="format"> - <param name="format" type="select" label="Format" argument="-format"> - <option value="">None</option> - <option value="docsum">docsum</option> - <option value="full">full</option> - <option value="uid">uid</option> - <option value="url">url</option> - <option value="xml">xml</option> - </param> - <when value=""> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="docsum"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="json">json</option> - </param> - </when> - <when value="full"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="uid"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="url"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="xml"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - </conditional> - </when> - <when value="seqannot"> - <conditional name="format"> - <param name="format" type="select" label="Format" argument="-format"> - <option value="">None</option> - <option value="docsum">docsum</option> - <option value="full">full</option> - <option value="uid">uid</option> - <option value="url">url</option> - <option value="xml">xml</option> - </param> - <when value=""> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="docsum"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="json">json</option> - </param> - </when> - <when value="full"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="uid"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="url"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="xml"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - </conditional> - </when> - <when value="sequences"> - <conditional name="format"> - <param name="format" type="select" label="Format" argument="-format"> - <option value="">None</option> - <option value="acc">acc</option> - <option value="docsum">docsum</option> - <option value="est">est</option> - <option value="fasta">fasta</option> - <option value="fasta_cds_aa">fasta_cds_aa</option> - <option value="fasta_cds_na">fasta_cds_na</option> - <option value="ft">ft</option> - <option value="full">full</option> - <option value="gb">gb</option> - <option value="gbc">gbc</option> - <option value="gbwithparts">gbwithparts</option> - <option value="gene_fasta">gene_fasta</option> - <option value="gp">gp</option> - <option value="gpc">gpc</option> - <option value="gss">gss</option> - <option value="ipg">ipg</option> - <option value="native">native</option> - <option value="seqid">seqid</option> - <option value="uid">uid</option> - <option value="url">url</option> - <option value="xml">xml</option> - </param> - <when value=""> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="acc"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="docsum"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="json">json</option> - </param> - </when> - <when value="est"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="fasta"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="xml">xml</option> - </param> - </when> - <when value="fasta_cds_aa"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="fasta_cds_na"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="ft"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="full"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="gb"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="xml">xml</option> - </param> - </when> - <when value="gbc"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="xml">xml</option> - </param> - </when> - <when value="gbwithparts"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="gene_fasta"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="gp"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="xml">xml</option> - </param> - </when> - <when value="gpc"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="xml">xml</option> - </param> - </when> - <when value="gss"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="ipg"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="xml">xml</option> - </param> - </when> - <when value="native"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="text">text</option> - <option value="xml">xml</option> - </param> - </when> - <when value="seqid"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="uid"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="url"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="xml"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - </conditional> - </when> - <when value="snp"> - <conditional name="format"> - <param name="format" type="select" label="Format" argument="-format"> - <option value="">None</option> - <option value="chr">chr</option> - <option value="docset">docset</option> - <option value="docsum">docsum</option> - <option value="fasta">fasta</option> - <option value="flt">flt</option> - <option value="full">full</option> - <option value="native">native</option> - <option value="rsr">rsr</option> - <option value="ssexemplar">ssexemplar</option> - <option value="uid">uid</option> - <option value="url">url</option> - <option value="xml">xml</option> - </param> - <when value=""> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="chr"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="docset"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="docsum"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="json">json</option> - </param> - </when> - <when value="fasta"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="flt"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="full"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="native"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="asn.1">asn.1</option> - <option value="xml">xml</option> - </param> - </when> - <when value="rsr"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="ssexemplar"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="uid"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="url"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="xml"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - </conditional> - </when> - <when value="sra"> - <conditional name="format"> - <param name="format" type="select" label="Format" argument="-format"> - <option value="">None</option> - <option value="docsum">docsum</option> - <option value="full">full</option> - <option value="native">native</option> - <option value="runinfo">runinfo</option> - <option value="uid">uid</option> - <option value="url">url</option> - <option value="xml">xml</option> - </param> - <when value=""> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="docsum"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="json">json</option> - </param> - </when> - <when value="full"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="native"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="xml">xml</option> - </param> - </when> - <when value="runinfo"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="xml">xml</option> - </param> - </when> - <when value="uid"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="url"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="xml"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - </conditional> - </when> - <when value="structure"> - <conditional name="format"> - <param name="format" type="select" label="Format" argument="-format"> - <option value="">None</option> - <option value="docsum">docsum</option> - <option value="full">full</option> - <option value="mmdb">mmdb</option> - <option value="native">native</option> - <option value="uid">uid</option> - <option value="url">url</option> - <option value="xml">xml</option> - </param> - <when value=""> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="docsum"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="json">json</option> - </param> - </when> - <when value="full"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="mmdb"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="native"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="xml">xml</option> - </param> - </when> - <when value="uid"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="url"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="xml"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - </conditional> - </when> - <when value="taxonomy"> - <conditional name="format"> - <param name="format" type="select" label="Format" argument="-format"> - <option value="">None</option> - <option value="docsum">docsum</option> - <option value="full">full</option> - <option value="native">native</option> - <option value="uid">uid</option> - <option value="url">url</option> - <option value="xml">xml</option> - </param> - <when value=""> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="docsum"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="json">json</option> - </param> - </when> - <when value="full"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="native"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="xml">xml</option> - </param> - </when> - <when value="uid"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="url"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="xml"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - </conditional> - </when> - <when value="unigene"> - <conditional name="format"> - <param name="format" type="select" label="Format" argument="-format"> - <option value="">None</option> - <option value="docsum">docsum</option> - <option value="full">full</option> - <option value="uid">uid</option> - <option value="url">url</option> - <option value="xml">xml</option> - </param> - <when value=""> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="docsum"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - <option value="json">json</option> - </param> - </when> - <when value="full"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="uid"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="url"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - <when value="xml"> - <param name="mode" type="select" label="Mode" argument="-mode"> - <option value="">None</option> - </param> - </when> - </conditional> - </when> - <when value=""> - <param name="db_manual" type="text" label="Database" argument="-db"/> - <param name="format" type="text" label="Format" argument="-format"/> - <param name="mode" type="text" label="Mode" argument="-mode"/> - </when> -</conditional> - - - - - <section name="ranges" title="Set Ranges" expanded="False"> - <param label="Seq Start" name="seq_start" type="integer" optional="True" min="0" argument="-seq_start"/> - <param label="Seq End" name="seq_stop" type="integer" optional="True" min="0" argument="-seq_stop"/> - <param label="strand" name="strand" type="text" argument="-strand"/> - <param label="Complexity" name="complexity" type="integer" optional="True" min="0" argument="-complexity"/> - <param label="Chr Start" name="chr_start" type="integer" optional="True" min="0" argument="-chr_start"/> - <param label="Chr End" name="chr_stop" type="integer" optional="True" min="0" argument="-chr_stop"/> - </section> - </inputs> - <outputs> - <data format="txt" name="output_result"> - <change_format> - <when input="db.format" value="xml" format="xml"/> - <when input="db.format.mode" value="xml" format="xml"/> - <when input="db.format.mode" value="json" format="json"/> - <when input="db.format" value="tabular" format="tabular"/> - <when input="db.format" value="fasta" format="fasta"/> - <when input="db.format" value="fasta_cds_aa" format="fasta"/> - <when input="db.format" value="fasta_cds_na" format="fasta"/> - <when input="db.format" value="gene_fasta" format="fasta"/> - </change_format> - </data> - </outputs> - <tests> - <test> - <param name="db|db" value=""/> - <param name="db|db_manual" value="sra"/> - <param name="db|format" value="runinfo"/> - <param name="query|source" value="id"/> - <param name="query|id" value="SRX8542266"/> - <output name="output_result"> - <assert_contents> - <has_text_matching expression="Run" /> - </assert_contents> - </output> - </test> - </tests> - <help><![CDATA[ + <section name="ranges" title="Set Ranges" expanded="False"> + <param argument="-seq_start" type="integer" min="0" optional="True" label="Seq Start"/> + <param argument="-seq_stop" type="integer" min="0" optional="True" label="Seq End"/> + <param argument="-strand" type="text" label="strand"/> + <param argument="-complexity" type="integer" min="0" optional="True" label="Complexity"/> + <param argument="-chr_start" type="integer" min="0" optional="True" label="Chr Start"/> + <param argument="-chr_stop" type="integer" min="0" optional="True" label="Chr End"/> + </section> + </inputs> + <outputs> + <data format="txt" name="output_result"> + <change_format> + <when input="db.format" value="xml" format="xml"/> + <when input="db.format.mode" value="xml" format="xml"/> + <when input="db.format.mode" value="json" format="json"/> + <when input="db.format" value="tabular" format="tabular"/> + <when input="db.format" value="fasta" format="fasta"/> + <when input="db.format" value="fasta_cds_aa" format="fasta"/> + <when input="db.format" value="fasta_cds_na" format="fasta"/> + <when input="db.format" value="gene_fasta" format="fasta"/> + </change_format> + </data> + </outputs> + <tests> + <test> + <param name="db|db" value=""/> + <param name="db|db_manual" value="sra"/> + <param name="db|format" value="runinfo"/> + <param name="query|source" value="id"/> + <param name="query|id" value="SRX8542266"/> + <output name="output_result"> + <assert_contents> + <has_text_matching expression="Run"/> + </assert_contents> + </output> + </test> + </tests> + <help><![CDATA[ NCBI Entrez EFetch ================== @@ -2577,5 +2572,5 @@ @DISCLAIMER@ ]]></help> - <expand macro="citations"/> + <expand macro="citations"/> </tool>
--- a/macros.xml Sat Dec 17 20:44:47 2022 +0000 +++ b/macros.xml Sat May 18 20:23:07 2024 +0000 @@ -1,5 +1,5 @@ <macros> - <token name="@TOOL_VERSION@">16.2</token> + <token name="@TOOL_VERSION@">21.6</token> <xml name="requirements"> <requirements> <requirement type="package" version="@TOOL_VERSION@">entrez-direct</requirement>