Mercurial > repos > iuc > ncbi_entrez_direct_esearch

annotate esearch.xml @ 0:b6ffd64c448e draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
author iuc
date Tue, 22 Mar 2022 22:30:57 +0000
parents
children f6046ed1f915
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0
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
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diff changeset
1 <tool id="ncbi_entrez_direct_esearch" name="NCBI ESearch" version="@TOOL_VERSION@">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
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2 <description>search NCBI Databases by text query</description>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
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3 <macros>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
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4 <import>macros.xml</import>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
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5 </macros>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
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6 <expand macro="requirements"/>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
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7 <version_command>esearch -version</version_command>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
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8 <command detect_errors="exit_code"><![CDATA[
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
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9 @ECONTACT@
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
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10 esearch
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
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11 -db "${db.db}"
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
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12 -sort "${db.sort}"
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
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13 -query "${query}"
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
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14 ${spell}
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
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15 #if $date.constraint:
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
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16 -datetype $date.datetype
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
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17 #if str( $date.days ):
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
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18 -days "${date.days}"
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
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19 #end if
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
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20 #if str( $date.mindate ):
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
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21 -mindate "${date.mindate}"
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
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22 #end if
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
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23 #if str( $date.maxdate ):
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
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24 -maxdate "${date.maxdate}"
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
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25 #end if
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
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26 #end if
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
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27 > '$output_xml'
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
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28 ]]>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
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29 </command>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
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30 <inputs>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
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31 <conditional name="db">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
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32 <param name="db" type="select" label="Choose your DB" argument="-db">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
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33 <option value="annotinfo">annotinfo</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
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34 <option value="assembly">assembly</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
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35 <option value="bioproject">bioproject</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
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36 <option value="biosample">biosample</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
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37 <option value="biosystems">biosystems</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
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38 <option value="blastdbinfo">blastdbinfo</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
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39 <option value="books">books</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
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40 <option value="cdd">cdd</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
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41 <option value="clinvar">clinvar</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
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42 <option value="clone">clone</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
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43 <option value="dbvar">dbvar</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
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44 <option value="gap">gap</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
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45 <option value="gapplus">gapplus</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
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46 <option value="gds">gds</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
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47 <option value="gencoll">gencoll</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
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48 <option value="gene">gene</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
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49 <option value="genome">genome</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
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50 <option value="geoprofiles">geoprofiles</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
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51 <option value="grasp">grasp</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
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52 <option value="gtr">gtr</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
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53 <option value="homologene">homologene</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
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54 <option value="medgen">medgen</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
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55 <option value="mesh">mesh</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
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56 <option value="ncbisearch">ncbisearch</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
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57 <option value="nlmcatalog">nlmcatalog</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
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58 <option value="nuccore">nuccore</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
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59 <option value="nucest">nucest</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
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60 <option value="nucgss">nucgss</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
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61 <option value="nucleotide">nucleotide</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
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62 <option value="omim">omim</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
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63 <option value="orgtrack">orgtrack</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
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64 <option value="pcassay">pcassay</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
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65 <option value="pccompound">pccompound</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
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66 <option value="pcsubstance">pcsubstance</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
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67 <option value="pmc">pmc</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
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68 <option value="popset">popset</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
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69 <option value="probe">probe</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
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70 <option value="protein">protein</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
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71 <option value="proteinclusters">proteinclusters</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
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72 <option value="pubmed">pubmed</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
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73 <option value="pubmedhealth">pubmedhealth</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
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74 <option value="seqannot">seqannot</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
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75 <option value="snp">snp</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
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76 <option value="sra">sra</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
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77 <option value="structure">structure</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
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78 <option value="taxonomy">taxonomy</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
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79 <option value="unigene">unigene</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
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80 </param>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
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81 <when value="annotinfo">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
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82 <param name="sort" type="select" label="Sort results by" argument="-sort">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
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83 <option value="Default Order">Default Order</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
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84 </param>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
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85 </when>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
86 <when value="assembly">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
87 <param name="sort" type="select" label="Sort results by" argument="-sort">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
88 <option value="Default Order">Default Order</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
89 </param>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
90 </when>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
91 <when value="bioproject">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
92 <param name="sort" type="select" label="Sort results by" argument="-sort">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
93 <option value="Default Order">Default Order</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
94 </param>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
95 </when>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
96 <when value="biosample">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
97 <param name="sort" type="select" label="Sort results by" argument="-sort">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
98 <option value="Default Order">Default Order</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
99 </param>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
100 </when>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
101 <when value="biosystems">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
102 <param name="sort" type="select" label="Sort results by" argument="-sort">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
103 <option value="Default Order">Default Order</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
104 </param>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
105 </when>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
106 <when value="blastdbinfo">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
107 <param name="sort" type="select" label="Sort results by" argument="-sort">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
108 <option value="Default Order">Default Order</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
109 </param>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
110 </when>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
111 <when value="books">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
112 <param name="sort" type="select" label="Sort results by" argument="-sort">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
113 <option value="Default Order">Default Order</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
114 </param>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
115 </when>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
116 <when value="cdd">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
117 <param name="sort" type="select" label="Sort results by" argument="-sort">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
118 <option value="Default Order">Default Order</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
119 </param>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
120 </when>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
121 <when value="clinvar">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
122 <param name="sort" type="select" label="Sort results by" argument="-sort">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
123 <option value="Default Order">Default Order</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
124 </param>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
125 </when>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
126 <when value="clone">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
127 <param name="sort" type="select" label="Sort results by" argument="-sort">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
128 <option value="Default Order">Default Order</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
129 </param>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
130 </when>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
131 <when value="dbvar">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
132 <param name="sort" type="select" label="Sort results by" argument="-sort">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
133 <option value="Default Order">Default Order</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
134 </param>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
135 </when>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
136 <when value="gap">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
137 <param name="sort" type="select" label="Sort results by" argument="-sort">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
138 <option value="Default Order">Default Order</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
139 </param>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
140 </when>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
141 <when value="gapplus">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
142 <param name="sort" type="select" label="Sort results by" argument="-sort">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
143 <option value="Default Order">Default Order</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
144 </param>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
145 </when>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
146 <when value="gds">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
147 <param name="sort" type="select" label="Sort results by" argument="-sort">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
148 <option value="Default Order">Default Order</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
149 </param>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
150 </when>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
151 <when value="gencoll">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
152 <param name="sort" type="select" label="Sort results by" argument="-sort">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
153 <option value="Default Order">Default Order</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
154 </param>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
155 </when>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
156 <when value="gene">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
157 <param name="sort" type="select" label="Sort results by" argument="-sort">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
158 <option value="Default Order">Default Order</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
159 </param>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
160 </when>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
161 <when value="genome">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
162 <param name="sort" type="select" label="Sort results by" argument="-sort">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
163 <option value="Default Order">Default Order</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
164 </param>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
165 </when>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
166 <when value="geoprofiles">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
167 <param name="sort" type="select" label="Sort results by" argument="-sort">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
168 <option value="Default Order">Default Order</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
169 </param>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
170 </when>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
171 <when value="grasp">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
172 <param name="sort" type="select" label="Sort results by" argument="-sort">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
173 <option value="Default Order">Default Order</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
174 </param>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
175 </when>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
176 <when value="gtr">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
177 <param name="sort" type="select" label="Sort results by" argument="-sort">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
178 <option value="Default Order">Default Order</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
179 </param>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
180 </when>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
181 <when value="homologene">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
182 <param name="sort" type="select" label="Sort results by" argument="-sort">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
183 <option value="Default Order">Default Order</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
184 </param>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
185 </when>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
186 <when value="medgen">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
187 <param name="sort" type="select" label="Sort results by" argument="-sort">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
188 <option value="Default Order">Default Order</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
189 </param>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
190 </when>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
191 <when value="mesh">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
192 <param name="sort" type="select" label="Sort results by" argument="-sort">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
193 <option value="Default Order">Default Order</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
194 </param>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
195 </when>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
196 <when value="ncbisearch">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
197 <param name="sort" type="select" label="Sort results by" argument="-sort">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
198 <option value="Default Order">Default Order</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
199 </param>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
200 </when>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
201 <when value="nlmcatalog">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
202 <param name="sort" type="select" label="Sort results by" argument="-sort">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
203 <option value="Default Order">Default Order</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
204 </param>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
205 </when>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
206 <when value="nuccore">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
207 <param name="sort" type="select" label="Sort results by" argument="-sort">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
208 <option value="Default Order">Default Order</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
209 </param>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
210 </when>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
211 <when value="nucest">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
212 <param name="sort" type="select" label="Sort results by" argument="-sort">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
213 <option value="Default Order">Default Order</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
214 </param>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
215 </when>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
216 <when value="nucgss">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
217 <param name="sort" type="select" label="Sort results by" argument="-sort">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
218 <option value="Default Order">Default Order</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
219 </param>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
220 </when>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
221 <when value="nucleotide">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
222 <param name="sort" type="select" label="Sort results by" argument="-sort">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
223 <option value="Default Order">Default Order</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
224 </param>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
225 </when>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
226 <when value="omim">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
227 <param name="sort" type="select" label="Sort results by" argument="-sort">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
228 <option value="Default Order">Default Order</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
229 </param>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
230 </when>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
231 <when value="orgtrack">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
232 <param name="sort" type="select" label="Sort results by" argument="-sort">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
233 <option value="Default Order">Default Order</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
234 </param>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
235 </when>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
236 <when value="pcassay">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
237 <param name="sort" type="select" label="Sort results by" argument="-sort">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
238 <option value="Default Order">Default Order</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
239 </param>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
240 </when>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
241 <when value="pccompound">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
242 <param name="sort" type="select" label="Sort results by" argument="-sort">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
243 <option value="Default Order">Default Order</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
244 </param>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
245 </when>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
246 <when value="pcsubstance">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
247 <param name="sort" type="select" label="Sort results by" argument="-sort">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
248 <option value="Default Order">Default Order</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
249 </param>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
250 </when>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
251 <when value="pmc">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
252 <param name="sort" type="select" label="Sort results by" argument="-sort">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
253 <option value="Default Order">Default Order</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
254 </param>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
255 </when>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
256 <when value="popset">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
257 <param name="sort" type="select" label="Sort results by" argument="-sort">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
258 <option value="Default Order">Default Order</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
259 </param>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
260 </when>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
261 <when value="probe">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
262 <param name="sort" type="select" label="Sort results by" argument="-sort">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
263 <option value="Default Order">Default Order</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
264 </param>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
265 </when>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
266 <when value="protein">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
267 <param name="sort" type="select" label="Sort results by" argument="-sort">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
268 <option value="Default Order">Default Order</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
269 </param>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
270 </when>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
271 <when value="proteinclusters">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
272 <param name="sort" type="select" label="Sort results by" argument="-sort">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
273 <option value="Default Order">Default Order</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
274 </param>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
275 </when>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
276 <when value="pubmed">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
277 <param name="sort" type="select" label="Sort results by" argument="-sort">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
278 <option value="Default Order">Default Order</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
279 </param>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
280 </when>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
281 <when value="pubmedhealth">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
282 <param name="sort" type="select" label="Sort results by" argument="-sort">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
283 <option value="Default Order">Default Order</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
284 </param>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
285 </when>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
286 <when value="seqannot">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
287 <param name="sort" type="select" label="Sort results by" argument="-sort">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
288 <option value="Default Order">Default Order</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
289 </param>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
290 </when>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
291 <when value="snp">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
292 <param name="sort" type="select" label="Sort results by" argument="-sort">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
293 <option value="Default Order">Default Order</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
294 </param>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
295 </when>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
296 <when value="sra">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
297 <param name="sort" type="select" label="Sort results by" argument="-sort">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
298 <option value="Default Order">Default Order</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
299 </param>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
300 </when>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
301 <when value="structure">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
302 <param name="sort" type="select" label="Sort results by" argument="-sort">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
303 <option value="Default Order">Default Order</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
304 </param>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
305 </when>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
306 <when value="taxonomy">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
307 <param name="sort" type="select" label="Sort results by" argument="-sort">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
308 <option value="Default Order">Default Order</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
309 </param>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
310 </when>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
311 <when value="unigene">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
312 <param name="sort" type="select" label="Sort results by" argument="-sort">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
313 <option value="Default Order">Default Order</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
314 </param>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
315 </when>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
316 </conditional>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
317 <param label="Search Term" name="query" type="text" argument="-query">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
318 <sanitizer>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
319 <valid>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
320 <add value="'"/>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
321 <add value="["/>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
322 <add value="]"/>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
323 </valid>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
324 </sanitizer>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
325 </param>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
326 <param name="spell" label="Correct misspellings in query" type="boolean" truevalue="-spell" falsevalue="" checked="false"/>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
327 <conditional name="date">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
328 <param label="Filter By Date" type="boolean" truevalue="True" falsevalue="False" checked="false" name="constraint"/>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
329 <when value="True">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
330 <param label="Date type" name="datetype" type="select">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
331 <option value="PDAT">Publish Date</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
332 <option value="EDAT">Entrez Date</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
333 <option value="MDAT">Modification Date</option>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
334 </param>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
335 <param label="Number of days in the past" name="days" value="" type="integer" min="1" optional="True"/>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
336 <param label="Minimum date" help="YYYY, YYYY/MM, or YYYY/MM/DD" name="mindate" type="text"/>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
337 <param label="Maximum date" help="YYYY, YYYY/MM, or YYYY/MM/DD" name="maxdate" type="text"/>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
338 </when>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
339 <when value="False"/>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
340 </conditional>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
341 </inputs>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
342 <outputs>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
343 <data format="xml" name="output_xml" label="ESearch Results for $query"/>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
344 </outputs>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
345 <tests>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
346 <test>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
347 <param name="db" value="sra"/>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
348 <param name="query" value="SRP000007"/>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
349 <output name="output_xml">
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
350 <assert_contents>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
351 <has_text_matching expression="ENTREZ_DIRECT" />
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
352 <has_text_matching expression="sra" />
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
353 <has_text_matching expression="WebEnv" />
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
354 <has_text_matching expression="QueryKey" />
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
355 <has_text_matching expression="Count" />
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
356 <has_text_matching expression="Step" />
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
357 <has_text_matching expression="WebEnv" />
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
358 </assert_contents>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
359 </output>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
360 </test>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
361 </tests>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
362 <help><![CDATA[
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
363 NCBI Entrez ESearch
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
364 ===================
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
365
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
366 Responds to a text query with the list of matching UIDs in a given database
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
367 (for later use in ESummary, EFetch or ELink), along with the term translations
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
368 of the query.
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
369
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
370 Example Queries
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
371 ---------------
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
372
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
373 Search in PubMed with the term cancer for abstracts that have an Entrez date
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
374 within the last 60 days:
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
375
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
376 +----------------------+-------------+
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
377 | Parameter | Value |
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
378 +======================+=============+
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
379 | NCBI Database to Use | PubMed |
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
380 +----------------------+-------------+
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
381 | Term | Cancer |
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
382 +----------------------+-------------+
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
383 | Datetype | Entrez Date |
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
384 +----------------------+-------------+
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
385 | In past N Days | 60 |
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
386 +----------------------+-------------+
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
387
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
388 Search PubMed Central for free full text articles containing the query stem cells:
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
389
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
390 +----------------------+--------------------------------------+
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
391 | Parameter | Value |
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
392 +======================+======================================+
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
393 | NCBI Database to Use | PubMedCentral |
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
394 +----------------------+--------------------------------------+
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
395 | Term | Stem Cells AND free fulltext[filter] |
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
396 +----------------------+--------------------------------------+
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
397
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
398 Search in Nucleotide for all tRNAs:
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
399
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
400 +----------------------+--------------------------------------+
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
401 | Parameter | Value |
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
402 +======================+======================================+
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
403 | NCBI Database to Use | Nucleotide |
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
404 +----------------------+--------------------------------------+
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
405 | Term | biomol trna[prop] |
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
406 +----------------------+--------------------------------------+
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
407
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
408 Search in Protein for a molecular weight range:
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
409
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
410 +----------------------+--------------------------------------+
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
411 | Parameter | Value |
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
412 +======================+======================================+
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
413 | NCBI Database to Use | Protein |
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
414 +----------------------+--------------------------------------+
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
415 | Term | 70000:90000[molecular weight] |
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
416 +----------------------+--------------------------------------+
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
417
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
418 @DISCLAIMER@
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
419 ]]></help>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
420 <expand macro="citations"/>
b6ffd64c448e "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_direct commit 8f96f378620bb663dcce2845ecb14355413f7afa"
iuc
parents:
diff changeset
421 </tool>