Mercurial > repos > iuc > ncbi_eutils_ecitmatch
comparison ecitmatch.xml @ 2:1dff3adb0a97 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit db33413a06c275efd4cc8e771c37facf543a2cfa"
author | iuc |
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date | Wed, 11 Mar 2020 04:03:55 -0400 |
parents | 68cd8d564e0a |
children |
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1:732a52c18758 | 2:1dff3adb0a97 |
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1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
2 <tool id="ncbi_eutils_ecitmatch" name="NCBI ECitMatch" version="@WRAPPER_VERSION@"> | 2 <tool id="ncbi_eutils_ecitmatch" name="NCBI ECitMatch" version="@WRAPPER_VERSION@" profile="@PROFILE@"> |
3 <description>search NCBI for citations in PubMed</description> | 3 <description>search NCBI for citations in PubMed</description> |
4 <macros> | 4 <macros> |
5 <import>macros.xml</import> | 5 <import>macros.xml</import> |
6 </macros> | 6 </macros> |
7 <expand macro="requirements"/> | 7 <expand macro="requirements"/> |
8 <version_command>python ecitmatch.py --version</version_command> | 8 <version_command>python ecitmatch.py --version</version_command> |
9 <command detect_errors="aggressive" interpreter="python"><![CDATA[ecitmatch.py | 9 <command detect_errors="aggressive"><![CDATA[ |
10 python '$__tool_directory__/ecitmatch.py' | |
10 | 11 |
11 #if str($input.method) == "file": | 12 #if str($input.method) == "file": |
12 --file $input.citation_file | 13 --file $input.citation_file |
13 #else | 14 #else |
14 #set keys = '" "'.join( [ str( $citation.key ) for $citation in $input.citations ] ) | 15 #set keys = '" "'.join( [ str( $citation.key ) for $citation in $input.citations ] ) |