Mercurial > repos > iuc > ncbi_eutils_efetch

comparison efetch.py @ 9:6c4b39080ed7 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 41f5eb8e0aee5b779d618b5178098c4be89a9ef1
author iuc
date Mon, 23 Jan 2023 10:37:57 +0000
parents c09fcbe4b16a
children
comparison
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8:c5ff15011115 9:6c4b39080ed7
100 for relpath in glob.glob('downloads-qkey*/*'): 100 for relpath in glob.glob('downloads-qkey*/*'):
101 file = os.path.basename(relpath) 101 file = os.path.basename(relpath)
102 os.rename(relpath, 'downloads/%s' % (file)) 102 os.rename(relpath, 'downloads/%s' % (file))
103 103
104 if problem is not None: 104 if problem is not None:
105 raise(problem) 105 raise problem
106 106
107 else: 107 else:
108 merged_ids = c.parse_ids(args.id_list, args.id, args.history_file, args.id_xml, args.id_json) 108 merged_ids = c.parse_ids(args.id_list, args.id, args.history_file, args.id_xml, args.id_json)
109 payload['id'] = ','.join(merged_ids) 109 payload['id'] = ','.join(merged_ids)
110 newname = 'downloads/EFetch-%s-%s-chunk' % (args.rettype, args.retmode) 110 newname = 'downloads/EFetch-%s-%s-chunk' % (args.rettype, args.retmode)