Mercurial > repos > iuc > ncbi_eutils_efetch

diff egquery.py @ 0:71bcf87a7031 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 15bcc5104c577b4b9c761f2854fc686c07ffa9db
author iuc
date Thu, 07 Jul 2016 02:39:36 -0400
parents
children 0fc65a60436f
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/egquery.py	Thu Jul 07 02:39:36 2016 -0400
@@ -0,0 +1,20 @@
+#!/usr/bin/env python
+import argparse
+import eutils
+
+
+if __name__ == '__main__':
+    parser = argparse.ArgumentParser(description='EGQuery', epilog='')
+    parser.add_argument('term', help='Query')
+    #
+    parser.add_argument('--user_email', help="User email")
+    parser.add_argument('--admin_email', help="Admin email")
+    args = parser.parse_args()
+
+    c = eutils.Client(user_email=args.user_email, admin_email=args.admin_email)
+
+    payload = {
+        'term': args.term,
+    }
+    results = c.gquery(**payload)
+    print results