--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/macros.xml	Thu Jul 07 02:39:36 2016 -0400
@@ -0,0 +1,847 @@
+<?xml version="1.0"?>
+<macros>
+  <token name="@WRAPPER_VERSION@">1.1</token>
+  <token name="@EMAIL_ARGUMENTS@">
+--user_email "$__user_email__"
+#set admin_emails = ';'.join(str($__admin_users__).split(','))
+--admin_email "$admin_emails"
+  </token>
+  <!--  TODO: citation -->
+  <token name="@REFERENCES@"><![CDATA[
+  ]]></token>
+  <token name="@DISCLAIMER@"><![CDATA[
+Usage Guidelines and Requirements
+=================================
+
+Frequency, Timing, and Registration of E-utility URL Requests
+-------------------------------------------------------------
+
+In order not to overload the E-utility servers, NCBI recommends that users
+limit large jobs to either weekends or between 9:00 PM and 5:00 AM Eastern time
+during weekdays. Failure to comply with this policy may result in an IP address
+being blocked from accessing NCBI.
+
+Minimizing the Number of Requests
+---------------------------------
+
+If a task requires searching for and/or downloading a large number of
+records, it is much more efficient to use the Entrez History to upload
+and/or retrieve these records in batches rather than using separate
+requests for each record. Please refer to Application 3 in Chapter 3
+for an example. Many thousands of IDs can be uploaded using a single
+EPost request, and several hundred records can be downloaded using one
+EFetch request.
+
+
+Disclaimer and Copyright Issues
+-------------------------------
+
+In accordance with requirements of NCBI's E-Utilities, we must provide
+the following disclaimer:
+
+Please note that abstracts in PubMed may incorporate material that may
+be protected by U.S. and foreign copyright laws. All persons
+reproducing, redistributing, or making commercial use of this
+information are expected to adhere to the terms and conditions asserted
+by the copyright holder. Transmission or reproduction of protected
+items beyond that allowed by fair use (PDF) as defined in the copyright
+laws requires the written permission of the copyright owners. NLM
+provides no legal advice concerning distribution of copyrighted
+materials. Please consult your legal counsel. If you wish to do a large
+data mining project on PubMed data, you can enter into a licensing
+agreement and lease the data for free from NLM. For more information on
+this please see `http://www.nlm.nih.gov/databases/leased.html <http://www.nlm.nih.gov/databases/leased.html>`__
+
+The `full disclaimer <http://www.ncbi.nlm.nih.gov/About/disclaimer.html>`__ is available on
+their website
+
+Liability
+~~~~~~~~~
+
+For documents and software available from this server, the
+U.S. Government does not warrant or assume any legal liability or
+responsibility for the accuracy, completeness, or usefulness of any
+information, apparatus, product, or process disclosed.
+
+Endorsement
+~~~~~~~~~~~
+
+NCBI does not endorse or recommend any commercial
+products, processes, or services. The views and opinions of authors
+expressed on NCBI's Web sites do not necessarily state or reflect those
+of the U.S. Government, and they may not be used for advertising or
+product endorsement purposes.
+
+External Links
+~~~~~~~~~~~~~~
+
+Some NCBI Web pages may provide links to other Internet
+sites for the convenience of users. NCBI is not responsible for the
+availability or content of these external sites, nor does NCBI endorse,
+warrant, or guarantee the products, services, or information described
+or offered at these other Internet sites. Users cannot assume that the
+external sites will abide by the same Privacy Policy to which NCBI
+adheres. It is the responsibility of the user to examine the copyright
+and licensing restrictions of linked pages and to secure all necessary
+permissions.
+        ]]></token>
+    <xml name="dbselect"
+        token_name="db_select"
+        token_label="NCBI Database to Use"
+        >
+    <param name="@NAME@" type="select" label="@LABEL@">
+      <option value="annotinfo">Annotation Information</option>
+      <option value="assembly">Assembly</option>
+      <option value="bioproject">BioProject</option>
+      <option value="biosample">BioSample</option>
+      <option value="biosystems">Biosystems</option>
+      <option value="blastdbinfo">Blast Database Information</option>
+      <option value="books">Books</option>
+      <option value="cdd">Conserved Domains</option>
+      <option value="clinvar">Clinical Variants</option>
+      <option value="clone">CLone</option>
+      <option value="dbvar">dbVar</option>
+      <option value="gap">dbGaP</option>
+      <option value="gapplus">gapplus</option>
+      <option value="gds">GEO Datasets</option>
+      <option value="gencoll">Gencoll</option>
+      <option value="gene">Gene</option>
+      <option value="genome">Genome</option>
+      <option value="geoprofiles">GEO Profiles</option>
+      <option value="grasp">grasp</option>
+      <option value="gtr">Genetic Testing Registry</option>
+      <option value="homologene">HomoloGene</option>
+      <option value="medgen">MedGen</option>
+      <option value="mesh">MeSH</option>
+      <option value="ncbisearch">NCBI Web Site</option>
+      <option value="nlmcatalog">NLM Catalog</option>
+      <option value="nuccore">Nuccore</option>
+      <option value="nucest">EST</option>
+      <option value="nucgss">GSS</option>
+      <option value="nucleotide">Nucleotide</option>
+      <option value="omim">OMIM</option>
+      <option value="orgtrack">Orgtrack</option>
+      <option value="pcassay">PubChem BioAssay</option>
+      <option value="pccompound">PubChem Compound</option>
+      <option value="pcsubstance">PubChem Substance</option>
+      <option value="pmc">PubMed Central</option>
+      <option value="popset">PopSet</option>
+      <option value="probe">Probe</option>
+      <option value="protein">Protein</option>
+      <option value="proteinclusters">Protein Clusters</option>
+      <option value="pubmed">PubMed</option>
+      <option value="pubmedhealth">PubMed Health</option>
+      <option value="seqannot">seqannot</option>
+      <option value="snp">SNP</option>
+      <option value="sra">SRA</option>
+      <option value="structure">Structure</option>
+      <option value="taxonomy">Taxonomy</option>
+      <option value="unigene">UniGene</option>
+    </param>
+  </xml>
+  <xml name="db">
+    <conditional name="db">
+      <expand macro="dbselect" />
+      <when value="annotinfo">
+        <param name="output_format" type="select" label="Output Format">
+          <option value="docsum-json">Document Summary (json)</option>
+          <option value="docsum-xml">Document Summary (xml)</option>
+          <option value="full-text">Full Document (text)</option>
+          <option value="full-xml">Full Document (xml)</option>
+          <option value="uilist-text">Unique Identifier List (text)</option>
+          <option value="uilist-xml">Unique Identifier List (xml)</option>
+        </param>
+      </when>
+      <when value="assembly">
+        <param name="output_format" type="select" label="Output Format">
+          <option value="docsum-json">Document Summary (json)</option>
+          <option value="docsum-xml">Document Summary (xml)</option>
+          <option value="full-text">Full Document (text)</option>
+          <option value="full-xml">Full Document (xml)</option>
+          <option value="uilist-text">Unique Identifier List (text)</option>
+          <option value="uilist-xml">Unique Identifier List (xml)</option>
+        </param>
+      </when>
+      <when value="bioproject">
+        <param name="output_format" type="select" label="Output Format">
+          <option value="docsum-json">Document Summary (json)</option>
+          <option value="docsum-xml">Document Summary (xml)</option>
+          <option value="full-text">Full Document (text)</option>
+          <option value="full-xml">Full Document (xml)</option>
+          <option value="native-None">BioProject Report</option>
+          <option value="native-xml">RecordSet (xml)</option>
+          <option value="uilist-text">Unique Identifier List (text)</option>
+          <option value="uilist-xml">Unique Identifier List (xml)</option>
+        </param>
+      </when>
+      <when value="biosample">
+        <param name="output_format" type="select" label="Output Format">
+          <option value="docsum-json">Document Summary (json)</option>
+          <option value="docsum-xml">Document Summary (xml)</option>
+          <option value="full-text">Full Document (text)</option>
+          <option value="full-xml">Full Document (xml)</option>
+          <option value="native-None">BioSample Report</option>
+          <option value="native-xml">BioSampleSet (xml)</option>
+          <option value="uilist-text">Unique Identifier List (text)</option>
+          <option value="uilist-xml">Unique Identifier List (xml)</option>
+        </param>
+      </when>
+      <when value="biosystems">
+        <param name="output_format" type="select" label="Output Format">
+          <option value="docsum-json">Document Summary (json)</option>
+          <option value="docsum-xml">Document Summary (xml)</option>
+          <option value="full-text">Full Document (text)</option>
+          <option value="full-xml">Full Document (xml)</option>
+          <option value="native-xml">Sys-set (xml)</option>
+          <option value="uilist-text">Unique Identifier List (text)</option>
+          <option value="uilist-xml">Unique Identifier List (xml)</option>
+        </param>
+      </when>
+      <when value="blastdbinfo">
+        <param name="output_format" type="select" label="Output Format">
+          <option value="docsum-json">Document Summary (json)</option>
+          <option value="docsum-xml">Document Summary (xml)</option>
+          <option value="full-text">Full Document (text)</option>
+          <option value="full-xml">Full Document (xml)</option>
+          <option value="uilist-text">Unique Identifier List (text)</option>
+          <option value="uilist-xml">Unique Identifier List (xml)</option>
+        </param>
+      </when>
+      <when value="books">
+        <param name="output_format" type="select" label="Output Format">
+          <option value="docsum-json">Document Summary (json)</option>
+          <option value="docsum-xml">Document Summary (xml)</option>
+          <option value="full-text">Full Document (text)</option>
+          <option value="full-xml">Full Document (xml)</option>
+          <option value="uilist-text">Unique Identifier List (text)</option>
+          <option value="uilist-xml">Unique Identifier List (xml)</option>
+        </param>
+      </when>
+      <when value="cdd">
+        <param name="output_format" type="select" label="Output Format">
+          <option value="docsum-json">Document Summary (json)</option>
+          <option value="docsum-xml">Document Summary (xml)</option>
+          <option value="full-text">Full Document (text)</option>
+          <option value="full-xml">Full Document (xml)</option>
+          <option value="uilist-text">Unique Identifier List (text)</option>
+          <option value="uilist-xml">Unique Identifier List (xml)</option>
+        </param>
+      </when>
+      <when value="clinvar">
+        <param name="output_format" type="select" label="Output Format">
+          <option value="docsum-json">Document Summary (json)</option>
+          <option value="docsum-xml">Document Summary (xml)</option>
+          <option value="full-text">Full Document (text)</option>
+          <option value="full-xml">Full Document (xml)</option>
+          <option value="uilist-text">Unique Identifier List (text)</option>
+          <option value="uilist-xml">Unique Identifier List (xml)</option>
+        </param>
+      </when>
+      <when value="clone">
+        <param name="output_format" type="select" label="Output Format">
+          <option value="docsum-json">Document Summary (json)</option>
+          <option value="docsum-xml">Document Summary (xml)</option>
+          <option value="full-text">Full Document (text)</option>
+          <option value="full-xml">Full Document (xml)</option>
+          <option value="uilist-text">Unique Identifier List (text)</option>
+          <option value="uilist-xml">Unique Identifier List (xml)</option>
+        </param>
+      </when>
+      <when value="dbvar">
+        <param name="output_format" type="select" label="Output Format">
+          <option value="docsum-json">Document Summary (json)</option>
+          <option value="docsum-xml">Document Summary (xml)</option>
+          <option value="full-text">Full Document (text)</option>
+          <option value="full-xml">Full Document (xml)</option>
+          <option value="uilist-text">Unique Identifier List (text)</option>
+          <option value="uilist-xml">Unique Identifier List (xml)</option>
+        </param>
+      </when>
+      <when value="gap">
+        <param name="output_format" type="select" label="Output Format">
+          <option value="docsum-json">Document Summary (json)</option>
+          <option value="docsum-xml">Document Summary (xml)</option>
+          <option value="full-text">Full Document (text)</option>
+          <option value="full-xml">Full Document (xml)</option>
+          <option value="uilist-text">Unique Identifier List (text)</option>
+          <option value="uilist-xml">Unique Identifier List (xml)</option>
+        </param>
+      </when>
+      <when value="gapplus">
+        <param name="output_format" type="select" label="Output Format">
+          <option value="docsum-json">Document Summary (json)</option>
+          <option value="docsum-xml">Document Summary (xml)</option>
+          <option value="full-text">Full Document (text)</option>
+          <option value="full-xml">Full Document (xml)</option>
+          <option value="uilist-text">Unique Identifier List (text)</option>
+          <option value="uilist-xml">Unique Identifier List (xml)</option>
+        </param>
+      </when>
+      <when value="gds">
+        <param name="output_format" type="select" label="Output Format">
+          <option value="docsum-json">Document Summary (json)</option>
+          <option value="docsum-xml">Document Summary (xml)</option>
+          <option value="full-text">Full Document (text)</option>
+          <option value="full-xml">Full Document (xml)</option>
+          <option value="native-xml">RecordSet (xml)</option>
+          <option value="summary-text">Summary (text)</option>
+          <option value="uilist-text">Unique Identifier List (text)</option>
+          <option value="uilist-xml">Unique Identifier List (xml)</option>
+        </param>
+      </when>
+      <when value="gencoll">
+        <param name="output_format" type="select" label="Output Format">
+          <option value="docsum-json">Document Summary (json)</option>
+          <option value="docsum-xml">Document Summary (xml)</option>
+          <option value="full-text">Full Document (text)</option>
+          <option value="full-xml">Full Document (xml)</option>
+          <option value="uilist-text">Unique Identifier List (text)</option>
+          <option value="uilist-xml">Unique Identifier List (xml)</option>
+        </param>
+      </when>
+      <when value="gene">
+        <param name="output_format" type="select" label="Output Format">
+          <option value="docsum-json">Document Summary (json)</option>
+          <option value="docsum-xml">Document Summary (xml)</option>
+          <option value="full-text">Full Document (text)</option>
+          <option value="full-xml">Full Document (xml)</option>
+          <option value="gene_table-xml">Gene Table (xml)</option>
+          <option value="native-asn.1">Entrezgene (asn.1)</option>
+          <option value="native-text">Gene Report (text)</option>
+          <option value="native-xml">Entrezgene-Set (xml)</option>
+          <option value="tabular-tabular">Tabular Report (tabular)</option>
+          <option value="uilist-text">Unique Identifier List (text)</option>
+          <option value="uilist-xml">Unique Identifier List (xml)</option>
+        </param>
+      </when>
+      <when value="genome">
+        <param name="output_format" type="select" label="Output Format">
+          <option value="docsum-json">Document Summary (json)</option>
+          <option value="docsum-xml">Document Summary (xml)</option>
+          <option value="full-text">Full Document (text)</option>
+          <option value="full-xml">Full Document (xml)</option>
+          <option value="uilist-text">Unique Identifier List (text)</option>
+          <option value="uilist-xml">Unique Identifier List (xml)</option>
+        </param>
+      </when>
+      <when value="geoprofiles">
+        <param name="output_format" type="select" label="Output Format">
+          <option value="docsum-json">Document Summary (json)</option>
+          <option value="docsum-xml">Document Summary (xml)</option>
+          <option value="full-text">Full Document (text)</option>
+          <option value="full-xml">Full Document (xml)</option>
+          <option value="uilist-text">Unique Identifier List (text)</option>
+          <option value="uilist-xml">Unique Identifier List (xml)</option>
+        </param>
+      </when>
+      <when value="grasp">
+        <param name="output_format" type="select" label="Output Format">
+          <option value="docsum-json">Document Summary (json)</option>
+          <option value="docsum-xml">Document Summary (xml)</option>
+          <option value="full-text">Full Document (text)</option>
+          <option value="full-xml">Full Document (xml)</option>
+          <option value="uilist-text">Unique Identifier List (text)</option>
+          <option value="uilist-xml">Unique Identifier List (xml)</option>
+        </param>
+      </when>
+      <when value="gtr">
+        <param name="output_format" type="select" label="Output Format">
+          <option value="docsum-json">Document Summary (json)</option>
+          <option value="docsum-xml">Document Summary (xml)</option>
+          <option value="full-text">Full Document (text)</option>
+          <option value="full-xml">Full Document (xml)</option>
+          <option value="uilist-text">Unique Identifier List (text)</option>
+          <option value="uilist-xml">Unique Identifier List (xml)</option>
+        </param>
+      </when>
+      <when value="homologene">
+        <param name="output_format" type="select" label="Output Format">
+          <option value="alignmentscores-text">Alignment Scores (text)</option>
+          <option value="docsum-json">Document Summary (json)</option>
+          <option value="docsum-xml">Document Summary (xml)</option>
+          <option value="fasta-fasta">FASTA (fasta)</option>
+          <option value="full-text">Full Document (text)</option>
+          <option value="full-xml">Full Document (xml)</option>
+          <option value="homologene-text">Homologene Report (text)</option>
+          <option value="native-asn.1">HG-Entry (asn.1)</option>
+          <option value="native-text">Homologene List (text)</option>
+          <option value="native-xml">Entrez-Homologene-Set (xml)</option>
+          <option value="uilist-text">Unique Identifier List (text)</option>
+          <option value="uilist-xml">Unique Identifier List (xml)</option>
+        </param>
+      </when>
+      <when value="medgen">
+        <param name="output_format" type="select" label="Output Format">
+          <option value="docsum-json">Document Summary (json)</option>
+          <option value="docsum-xml">Document Summary (xml)</option>
+          <option value="full-text">Full Document (text)</option>
+          <option value="full-xml">Full Document (xml)</option>
+          <option value="uilist-text">Unique Identifier List (text)</option>
+          <option value="uilist-xml">Unique Identifier List (xml)</option>
+        </param>
+      </when>
+      <when value="mesh">
+        <param name="output_format" type="select" label="Output Format">
+          <option value="docsum-json">Document Summary (json)</option>
+          <option value="docsum-xml">Document Summary (xml)</option>
+          <option value="full-text">Full Document (text)</option>
+          <option value="full-text">Full Record (text)</option>
+          <option value="full-xml">Full Document (xml)</option>
+          <option value="native-text">MeSH Report (text)</option>
+          <option value="native-xml">RecordSet (xml)</option>
+          <option value="uilist-text">Unique Identifier List (text)</option>
+          <option value="uilist-xml">Unique Identifier List (xml)</option>
+        </param>
+      </when>
+      <when value="ncbisearch">
+        <param name="output_format" type="select" label="Output Format">
+          <option value="docsum-json">Document Summary (json)</option>
+          <option value="docsum-xml">Document Summary (xml)</option>
+          <option value="full-text">Full Document (text)</option>
+          <option value="full-xml">Full Document (xml)</option>
+          <option value="uilist-text">Unique Identifier List (text)</option>
+          <option value="uilist-xml">Unique Identifier List (xml)</option>
+        </param>
+      </when>
+      <when value="nlmcatalog">
+        <param name="output_format" type="select" label="Output Format">
+          <option value="docsum-json">Document Summary (json)</option>
+          <option value="docsum-xml">Document Summary (xml)</option>
+          <option value="full-text">Full Document (text)</option>
+          <option value="full-xml">Full Document (xml)</option>
+          <option value="native-text">Full Record (text)</option>
+          <option value="native-xml">NLMCatalogRecordSet (xml)</option>
+          <option value="uilist-text">Unique Identifier List (text)</option>
+          <option value="uilist-xml">Unique Identifier List (xml)</option>
+        </param>
+      </when>
+      <when value="nuccore">
+        <param name="output_format" type="select" label="Output Format">
+          <option value="acc-text">Accession Number (text)</option>
+          <option value="docsum-json">Document Summary (json)</option>
+          <option value="docsum-xml">Document Summary (xml)</option>
+          <option value="est-xml">EST Report (xml)</option>
+          <option value="fasta-fasta">FASTA (fasta)</option>
+          <option value="fasta-xml">TinySeq (xml)</option>
+          <option value="fasta_cds_aa-fasta">CDS Products (fasta)</option>
+          <option value="fasta_cds_na-fasta">Coding Regions (fasta)</option>
+          <option value="ft-text">Feature Table (text)</option>
+          <option value="full-text">Full Document (text)</option>
+          <option value="full-xml">Full Document (xml)</option>
+          <option value="gb-text">GenBank Flatfile (text)</option>
+          <option value="gb-xml">GBSet (xml)</option>
+          <option value="gbc-xml">INSDSet (xml)</option>
+          <option value="gbwithparts-text">GenBank with Contig Sequences (text)</option>
+          <option value="gene_fasta-fasta">FASTA of Gene (fasta)</option>
+          <option value="gp-text">GenPept Flatfile (text)</option>
+          <option value="gp-xml">GBSet (xml)</option>
+          <option value="gpc-xml">INSDSet (xml)</option>
+          <option value="gss-text">GSS Report (text)</option>
+          <option value="ipg-text">Identical Protein Report (text)</option>
+          <option value="ipg-xml">IPGReportSet (xml)</option>
+          <option value="native-text">Seq-entry (text)</option>
+          <option value="native-xml">Bioseq-set (xml)</option>
+          <option value="seqid-asn.1">Seq-id (asn.1)</option>
+          <option value="uilist-text">Unique Identifier List (text)</option>
+          <option value="uilist-xml">Unique Identifier List (xml)</option>
+        </param>
+      </when>
+      <when value="nucest">
+        <param name="output_format" type="select" label="Output Format">
+          <option value="acc-text">Accession Number (text)</option>
+          <option value="docsum-json">Document Summary (json)</option>
+          <option value="docsum-xml">Document Summary (xml)</option>
+          <option value="est-xml">EST Report (xml)</option>
+          <option value="fasta-fasta">FASTA (fasta)</option>
+          <option value="fasta-xml">TinySeq (xml)</option>
+          <option value="fasta_cds_aa-fasta">CDS Products (fasta)</option>
+          <option value="fasta_cds_na-fasta">Coding Regions (fasta)</option>
+          <option value="ft-text">Feature Table (text)</option>
+          <option value="full-text">Full Document (text)</option>
+          <option value="full-xml">Full Document (xml)</option>
+          <option value="gb-text">GenBank Flatfile (text)</option>
+          <option value="gb-xml">GBSet (xml)</option>
+          <option value="gbc-xml">INSDSet (xml)</option>
+          <option value="gbwithparts-text">GenBank with Contig Sequences (text)</option>
+          <option value="gene_fasta-fasta">FASTA of Gene (fasta)</option>
+          <option value="gp-text">GenPept Flatfile (text)</option>
+          <option value="gp-xml">GBSet (xml)</option>
+          <option value="gpc-xml">INSDSet (xml)</option>
+          <option value="gss-text">GSS Report (text)</option>
+          <option value="ipg-text">Identical Protein Report (text)</option>
+          <option value="ipg-xml">IPGReportSet (xml)</option>
+          <option value="native-text">Seq-entry (text)</option>
+          <option value="native-xml">Bioseq-set (xml)</option>
+          <option value="seqid-asn.1">Seq-id (asn.1)</option>
+          <option value="uilist-text">Unique Identifier List (text)</option>
+          <option value="uilist-xml">Unique Identifier List (xml)</option>
+        </param>
+      </when>
+      <when value="nucgss">
+        <param name="output_format" type="select" label="Output Format">
+          <option value="acc-text">Accession Number (text)</option>
+          <option value="docsum-json">Document Summary (json)</option>
+          <option value="docsum-xml">Document Summary (xml)</option>
+          <option value="est-xml">EST Report (xml)</option>
+          <option value="fasta-fasta">FASTA (fasta)</option>
+          <option value="fasta-xml">TinySeq (xml)</option>
+          <option value="fasta_cds_aa-fasta">CDS Products (fasta)</option>
+          <option value="fasta_cds_na-fasta">Coding Regions (fasta)</option>
+          <option value="ft-text">Feature Table (text)</option>
+          <option value="full-text">Full Document (text)</option>
+          <option value="full-xml">Full Document (xml)</option>
+          <option value="gb-text">GenBank Flatfile (text)</option>
+          <option value="gb-xml">GBSet (xml)</option>
+          <option value="gbc-xml">INSDSet (xml)</option>
+          <option value="gbwithparts-text">GenBank with Contig Sequences (text)</option>
+          <option value="gene_fasta-fasta">FASTA of Gene (fasta)</option>
+          <option value="gp-text">GenPept Flatfile (text)</option>
+          <option value="gp-xml">GBSet (xml)</option>
+          <option value="gpc-xml">INSDSet (xml)</option>
+          <option value="gss-text">GSS Report (text)</option>
+          <option value="ipg-text">Identical Protein Report (text)</option>
+          <option value="ipg-xml">IPGReportSet (xml)</option>
+          <option value="native-text">Seq-entry (text)</option>
+          <option value="native-xml">Bioseq-set (xml)</option>
+          <option value="seqid-asn.1">Seq-id (asn.1)</option>
+          <option value="uilist-text">Unique Identifier List (text)</option>
+          <option value="uilist-xml">Unique Identifier List (xml)</option>
+        </param>
+      </when>
+      <when value="nucleotide">
+        <param name="output_format" type="select" label="Output Format">
+          <option value="acc-text">Accession Number (text)</option>
+          <option value="docsum-json">Document Summary (json)</option>
+          <option value="docsum-xml">Document Summary (xml)</option>
+          <option value="est-xml">EST Report (xml)</option>
+          <option value="fasta-fasta">FASTA (fasta)</option>
+          <option value="fasta-xml">TinySeq (xml)</option>
+          <option value="fasta_cds_aa-fasta">CDS Products (fasta)</option>
+          <option value="fasta_cds_na-fasta">Coding Regions (fasta)</option>
+          <option value="ft-text">Feature Table (text)</option>
+          <option value="full-text">Full Document (text)</option>
+          <option value="full-xml">Full Document (xml)</option>
+          <option value="gb-text">GenBank Flatfile (text)</option>
+          <option value="gb-xml">GBSet (xml)</option>
+          <option value="gbc-xml">INSDSet (xml)</option>
+          <option value="gbwithparts-text">GenBank with Contig Sequences (text)</option>
+          <option value="gene_fasta-fasta">FASTA of Gene (fasta)</option>
+          <option value="gp-text">GenPept Flatfile (text)</option>
+          <option value="gp-xml">GBSet (xml)</option>
+          <option value="gpc-xml">INSDSet (xml)</option>
+          <option value="gss-text">GSS Report (text)</option>
+          <option value="ipg-text">Identical Protein Report (text)</option>
+          <option value="ipg-xml">IPGReportSet (xml)</option>
+          <option value="native-text">Seq-entry (text)</option>
+          <option value="native-xml">Bioseq-set (xml)</option>
+          <option value="seqid-asn.1">Seq-id (asn.1)</option>
+          <option value="uilist-text">Unique Identifier List (text)</option>
+          <option value="uilist-xml">Unique Identifier List (xml)</option>
+        </param>
+      </when>
+      <when value="omim">
+        <param name="output_format" type="select" label="Output Format">
+          <option value="docsum-json">Document Summary (json)</option>
+          <option value="docsum-xml">Document Summary (xml)</option>
+          <option value="full-text">Full Document (text)</option>
+          <option value="full-xml">Full Document (xml)</option>
+          <option value="uilist-text">Unique Identifier List (text)</option>
+          <option value="uilist-xml">Unique Identifier List (xml)</option>
+        </param>
+      </when>
+      <when value="orgtrack">
+        <param name="output_format" type="select" label="Output Format">
+          <option value="docsum-json">Document Summary (json)</option>
+          <option value="docsum-xml">Document Summary (xml)</option>
+          <option value="full-text">Full Document (text)</option>
+          <option value="full-xml">Full Document (xml)</option>
+          <option value="uilist-text">Unique Identifier List (text)</option>
+          <option value="uilist-xml">Unique Identifier List (xml)</option>
+        </param>
+      </when>
+      <when value="pcassay">
+        <param name="output_format" type="select" label="Output Format">
+          <option value="docsum-json">Document Summary (json)</option>
+          <option value="docsum-xml">Document Summary (xml)</option>
+          <option value="full-text">Full Document (text)</option>
+          <option value="full-xml">Full Document (xml)</option>
+          <option value="uilist-text">Unique Identifier List (text)</option>
+          <option value="uilist-xml">Unique Identifier List (xml)</option>
+        </param>
+      </when>
+      <when value="pccompound">
+        <param name="output_format" type="select" label="Output Format">
+          <option value="docsum-json">Document Summary (json)</option>
+          <option value="docsum-xml">Document Summary (xml)</option>
+          <option value="full-text">Full Document (text)</option>
+          <option value="full-xml">Full Document (xml)</option>
+          <option value="uilist-text">Unique Identifier List (text)</option>
+          <option value="uilist-xml">Unique Identifier List (xml)</option>
+        </param>
+      </when>
+      <when value="pcsubstance">
+        <param name="output_format" type="select" label="Output Format">
+          <option value="docsum-json">Document Summary (json)</option>
+          <option value="docsum-xml">Document Summary (xml)</option>
+          <option value="full-text">Full Document (text)</option>
+          <option value="full-xml">Full Document (xml)</option>
+          <option value="uilist-text">Unique Identifier List (text)</option>
+          <option value="uilist-xml">Unique Identifier List (xml)</option>
+        </param>
+      </when>
+      <when value="pmc">
+        <param name="output_format" type="select" label="Output Format">
+          <option value="docsum-json">Document Summary (json)</option>
+          <option value="docsum-xml">Document Summary (xml)</option>
+          <option value="full-text">Full Document (text)</option>
+          <option value="full-xml">Full Document (xml)</option>
+          <option value="medline-text">MEDLINE (text)</option>
+          <option value="native-xml">pmc-articleset (xml)</option>
+          <option value="uilist-text">Unique Identifier List (text)</option>
+          <option value="uilist-xml">Unique Identifier List (xml)</option>
+        </param>
+      </when>
+      <when value="popset">
+        <param name="output_format" type="select" label="Output Format">
+          <option value="docsum-json">Document Summary (json)</option>
+          <option value="docsum-xml">Document Summary (xml)</option>
+          <option value="full-text">Full Document (text)</option>
+          <option value="full-xml">Full Document (xml)</option>
+          <option value="uilist-text">Unique Identifier List (text)</option>
+          <option value="uilist-xml">Unique Identifier List (xml)</option>
+        </param>
+      </when>
+      <when value="probe">
+        <param name="output_format" type="select" label="Output Format">
+          <option value="docsum-json">Document Summary (json)</option>
+          <option value="docsum-xml">Document Summary (xml)</option>
+          <option value="full-text">Full Document (text)</option>
+          <option value="full-xml">Full Document (xml)</option>
+          <option value="uilist-text">Unique Identifier List (text)</option>
+          <option value="uilist-xml">Unique Identifier List (xml)</option>
+        </param>
+      </when>
+      <when value="protein">
+        <param name="output_format" type="select" label="Output Format">
+          <option value="docsum-json">Document Summary (json)</option>
+          <option value="docsum-xml">Document Summary (xml)</option>
+          <option value="full-text">Full Document (text)</option>
+          <option value="full-xml">Full Document (xml)</option>
+          <option value="uilist-text">Unique Identifier List (text)</option>
+          <option value="uilist-xml">Unique Identifier List (xml)</option>
+        </param>
+      </when>
+      <when value="proteinclusters">
+        <param name="output_format" type="select" label="Output Format">
+          <option value="docsum-json">Document Summary (json)</option>
+          <option value="docsum-xml">Document Summary (xml)</option>
+          <option value="full-text">Full Document (text)</option>
+          <option value="full-xml">Full Document (xml)</option>
+          <option value="uilist-text">Unique Identifier List (text)</option>
+          <option value="uilist-xml">Unique Identifier List (xml)</option>
+        </param>
+      </when>
+      <when value="pubmed">
+        <param name="output_format" type="select" label="Output Format">
+          <option value="abstract-xml">Abstract (xml)</option>
+          <option value="docsum-json">Document Summary (json)</option>
+          <option value="docsum-xml">Document Summary (xml)</option>
+          <option value="full-text">Full Document (text)</option>
+          <option value="full-xml">Full Document (xml)</option>
+          <option value="medline-text">MEDLINE (text)</option>
+          <option value="native-asn.1">Pubmed-entry (asn.1)</option>
+          <option value="native-xml">PubmedArticleSet (xml)</option>
+          <option value="uilist-text">Unique Identifier List (text)</option>
+          <option value="uilist-xml">Unique Identifier List (xml)</option>
+        </param>
+      </when>
+      <when value="pubmedhealth">
+        <param name="output_format" type="select" label="Output Format">
+          <option value="docsum-json">Document Summary (json)</option>
+          <option value="docsum-xml">Document Summary (xml)</option>
+          <option value="full-text">Full Document (text)</option>
+          <option value="full-xml">Full Document (xml)</option>
+          <option value="uilist-text">Unique Identifier List (text)</option>
+          <option value="uilist-xml">Unique Identifier List (xml)</option>
+        </param>
+      </when>
+      <when value="seqannot">
+        <param name="output_format" type="select" label="Output Format">
+          <option value="docsum-json">Document Summary (json)</option>
+          <option value="docsum-xml">Document Summary (xml)</option>
+          <option value="full-text">Full Document (text)</option>
+          <option value="full-xml">Full Document (xml)</option>
+          <option value="uilist-text">Unique Identifier List (text)</option>
+          <option value="uilist-xml">Unique Identifier List (xml)</option>
+        </param>
+      </when>
+      <when value="snp">
+        <param name="output_format" type="select" label="Output Format">
+          <option value="chr-text">Chromosome Report (text)</option>
+          <option value="docset-text">Summary (text)</option>
+          <option value="docsum-json">Document Summary (json)</option>
+          <option value="docsum-xml">Document Summary (xml)</option>
+          <option value="fasta-fasta">FASTA (fasta)</option>
+          <option value="flt-text">Flat File (text)</option>
+          <option value="full-text">Full Document (text)</option>
+          <option value="full-xml">Full Document (xml)</option>
+          <option value="native-asn.1">Rs (asn.1)</option>
+          <option value="native-xml">ExchangeSet (xml)</option>
+          <option value="rsr-tabular">RS Cluster Report (tabular)</option>
+          <option value="ssexemplar-text">SS Exemplar List (text)</option>
+          <option value="uilist-text">Unique Identifier List (text)</option>
+          <option value="uilist-xml">Unique Identifier List (xml)</option>
+        </param>
+      </when>
+      <when value="sra">
+        <param name="output_format" type="select" label="Output Format">
+          <option value="docsum-json">Document Summary (json)</option>
+          <option value="docsum-xml">Document Summary (xml)</option>
+          <option value="full-text">Full Document (text)</option>
+          <option value="full-xml">Full Document (xml)</option>
+          <option value="native-xml">EXPERIMENT_PACKAGE_SET (xml)</option>
+          <option value="runinfo-xml">SraRunInfo (xml)</option>
+          <option value="uilist-text">Unique Identifier List (text)</option>
+          <option value="uilist-xml">Unique Identifier List (xml)</option>
+        </param>
+      </when>
+      <when value="structure">
+        <param name="output_format" type="select" label="Output Format">
+          <option value="docsum-json">Document Summary (json)</option>
+          <option value="docsum-xml">Document Summary (xml)</option>
+          <option value="full-text">Full Document (text)</option>
+          <option value="full-xml">Full Document (xml)</option>
+          <option value="mmdb-asn.1">Ncbi-mime-asn1 strucseq (asn.1)</option>
+          <option value="native-text">MMDB Report (text)</option>
+          <option value="native-xml">RecordSet (xml)</option>
+          <option value="uilist-text">Unique Identifier List (text)</option>
+          <option value="uilist-xml">Unique Identifier List (xml)</option>
+        </param>
+      </when>
+      <when value="taxonomy">
+        <param name="output_format" type="select" label="Output Format">
+          <option value="docsum-json">Document Summary (json)</option>
+          <option value="docsum-xml">Document Summary (xml)</option>
+          <option value="full-text">Full Document (text)</option>
+          <option value="full-xml">Full Document (xml)</option>
+          <option value="native-text">Taxonomy List (text)</option>
+          <option value="native-xml">TaxaSet (xml)</option>
+          <option value="uilist-text">Unique Identifier List (text)</option>
+          <option value="uilist-xml">Unique Identifier List (xml)</option>
+        </param>
+      </when>
+      <when value="unigene">
+        <param name="output_format" type="select" label="Output Format">
+          <option value="docsum-json">Document Summary (json)</option>
+          <option value="docsum-xml">Document Summary (xml)</option>
+          <option value="full-text">Full Document (text)</option>
+          <option value="full-xml">Full Document (xml)</option>
+          <option value="uilist-text">Unique Identifier List (text)</option>
+          <option value="uilist-xml">Unique Identifier List (xml)</option>
+        </param>
+      </when>
+    </conditional>
+  </xml>
+
+  <xml name="efetch_formats">
+    <change_format>
+      <when input="output_format" value="fasta_cds_na-fasta" format="fasta"/>
+      <when input="output_format" value="ipg-xml" format="xml"/>
+      <when input="output_format" value="gbc-xml" format="xml"/>
+      <when input="output_format" value="medline-text" format="text"/>
+      <when input="output_format" value="native-None" format="text"/>
+      <when input="output_format" value="mmdb-asn.1" format="asn1"/>
+      <when input="output_format" value="seqid-asn.1" format="asn1"/>
+      <when input="output_format" value="acc-text" format="text"/>
+      <when input="output_format" value="summary-text" format="text"/>
+      <when input="output_format" value="gene_fasta-fasta" format="fasta"/>
+      <when input="output_format" value="native-text" format="text"/>
+      <when input="output_format" value="gbwithparts-text" format="text"/>
+      <when input="output_format" value="gpc-xml" format="xml"/>
+      <when input="output_format" value="fasta_cds_aa-fasta" format="fasta"/>
+      <when input="output_format" value="gp-text" format="text"/>
+      <when input="output_format" value="gss-text" format="text"/>
+      <when input="output_format" value="ipg-text" format="text"/>
+      <when input="output_format" value="uilist-xml" format="xml"/>
+      <when input="output_format" value="docsum-xml" format="xml"/>
+      <when input="output_format" value="rsr-tabular" format="tabular"/>
+      <when input="output_format" value="uilist-text" format="text"/>
+      <when input="output_format" value="gb-text" format="text"/>
+      <when input="output_format" value="chr-text" format="text"/>
+      <when input="output_format" value="alignmentscores-text" format="text"/>
+      <when input="output_format" value="native-asn.1" format="asn1"/>
+      <when input="output_format" value="gp-xml" format="xml"/>
+      <when input="output_format" value="tabular-tabular" format="tabular"/>
+      <when input="output_format" value="ssexemplar-text" format="text"/>
+      <when input="output_format" value="docsum-json" format="json"/>
+      <when input="output_format" value="fasta-xml" format="xml"/>
+      <when input="output_format" value="runinfo-xml" format="xml"/>
+      <when input="output_format" value="flt-text" format="text"/>
+      <when input="output_format" value="fasta-fasta" format="fasta"/>
+      <when input="output_format" value="full-text" format="text"/>
+      <when input="output_format" value="gb-xml" format="xml"/>
+      <when input="output_format" value="abstract-xml" format="xml"/>
+      <when input="output_format" value="full-xml" format="xml"/>
+      <when input="output_format" value="ft-text" format="text"/>
+      <when input="output_format" value="homologene-text" format="text"/>
+      <when input="output_format" value="est-xml" format="xml"/>
+      <when input="output_format" value="gene_table-xml" format="xml"/>
+      <when input="output_format" value="docset-text" format="text"/>
+      <when input="output_format" value="native-xml" format="xml"/>
+    </change_format>
+  </xml>
+  <token name="@LIST_OR_HIST@">
+#if $query_source.qss == "history":
+    --history_file $query_source.history_file
+#else if $query_source.qss == "id_file":
+    --id_list $query_source.id_file
+#else if $query_source.qss == "id_list":
+    --id $query_source.id_list
+#end if
+    </token>
+  <xml name="list_or_hist">
+    <conditional name="query_source">
+      <param name="qss" type="select" label="Select source for IDs">
+        <option value="history">NCBI WebEnv History</option>
+        <option value="id_file">File containing IDs (one per line)</option>
+        <option value="id_list">Direct Entry</option>
+      </param>
+      <when value="history">
+        <param label="History File" name="history_file" type="data" format="json"/>
+      </when>
+      <when value="id_file">
+        <param label="ID List" name="id_file" type="data" format="text,tabular"/>
+      </when>
+      <when value="id_list">
+        <param label="ID List" name="id_list" type="text" area="true" help="Newline/Comma separated list of IDs"/>
+      </when>
+    </conditional>
+  </xml>
+  <xml name="history_out">
+    <data format="json" name="history" label="NCBI Entrez WebEnv History">
+      <yield/>
+    </data>
+  </xml>
+  <xml name="citations">
+    <citations>
+      <citation type="bibtex">@Book{ncbiEutils,
+          author = {Eric Sayers},
+          title = {Entrez Programming Utilities Help},
+          year = {2010},
+          publisher = {National Center for Biotechnology Information, Bethesda, Maryland},
+          note = {http://ww.ncbi.nlm.nih.gov/books/NBK25500/}
+      }</citation>
+    </citations>
+  </xml>
+  <xml name="requirements">
+    <requirements>
+      <requirement type="package" version="2.7">python</requirement>
+      <requirement type="package" version="1.66">biopython</requirement>
+    </requirements>
+  </xml>
+  <xml name="linkname">
+    <param name="linkname" type="select" label="To NCBI Database">
+        <!-- TODO: http://eutils.ncbi.nlm.nih.gov/entrez/query/static/entrezlinks.html -->
+    </param>
+  </xml>
+</macros>