Mercurial > repos > iuc > ncbi_eutils_efetch
view egquery.py @ 5:4194e47b45d4 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 1001b4507ae415300b9a37ff60e083bd63460369"
author | iuc |
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date | Fri, 26 Feb 2021 20:18:24 +0000 |
parents | c09fcbe4b16a |
children |
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#!/usr/bin/env python import argparse import eutils if __name__ == '__main__': parser = argparse.ArgumentParser(description='EGQuery', epilog='') parser.add_argument('term', help='Query') parser.add_argument('--user_email', help="User email") parser.add_argument('--admin_email', help="Admin email") parser.add_argument('--version', action='version', version=eutils.Client.getVersion(), help='Version (reports Biopython version)') args = parser.parse_args() c = eutils.Client(user_email=args.user_email, admin_email=args.admin_email) payload = { 'term': args.term, } results = c.gquery(**payload) print(results)