Mercurial > repos > iuc > ncbi_eutils_egquery

annotate egquery.xml @ 6:fa46c83fd82a draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit b399ac5996d8225353d3abaff58eb986da5545d7"
author iuc
date Wed, 06 Oct 2021 07:58:56 +0000
parents d1789b4821fc
children 5277d159053d
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1 <?xml version="1.0"?>
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2 <tool id="ncbi_eutils_egquery" name="NCBI EGQuery" version="@WRAPPER_VERSION@" profile="@PROFILE@">
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3 <description>Provides the number of records retrieved in all Entrez databases by a single text query.</description>
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4 <macros>
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5 <import>macros.xml</import>
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6 </macros>
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7 <expand macro="requirements"/>
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8 <version_command>python egquery.py --version</version_command>
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9 <command detect_errors="aggressive"><![CDATA[
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10 python '$__tool_directory__/egquery.py'
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11 "$term"
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13 @EMAIL_ARGUMENTS@
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14 > $default]]></command>
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15 <inputs>
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16 <expand macro="dbselect"/>
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17 <param label="Search Term" name="term" type="text">
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18 <sanitizer>
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19 <valid>
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20 <add value="'"/>
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21 <add value="["/>
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22 <add value="]"/>
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23 </valid>
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24 </sanitizer>
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25 </param>
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26 </inputs>
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27 <outputs>
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28 <data format="xml" name="default" label="EGQuery Results for $term"/>
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29 <data format="json" name="history" label="NCBI History">
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30 <filter>use_history</filter>
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31 </data>
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32 </outputs>
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33 <tests>
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34 <test>
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35 <param name="term" value="bacteriophage"/>
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36 <output name="default" file="egquery.1.xml" compare="contains" ftype="xml"/>
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37 </test>
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38 </tests>
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39 <help><![CDATA[
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40 NCBI Entrez EGQuery
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41 ===================
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43 Provides the number of records retrieved in all Entrez databases by a single
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44 text query.
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46 Example Queries
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47 ---------------
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49 +----------------------+-------------+
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50 | Parameter | Value |
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51 +======================+=============+
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52 | Term | Cancer |
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53 +----------------------+-------------+
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54
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55 @REFERENCES@
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57 @DISCLAIMER@
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58 ]]></help>
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59 <expand macro="citations"/>
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60 </tool>