Mercurial > repos > iuc > ncbi_eutils_egquery

comparison egquery.xml @ 0:9d18e6815994 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit 15bcc5104c577b4b9c761f2854fc686c07ffa9db
author iuc
date Thu, 07 Jul 2016 02:39:52 -0400
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-1:000000000000 0:9d18e6815994
1 <?xml version="1.0"?>
2 <tool id="ncbi_eutils_egquery" name="NCBI EGQuery" version="@WRAPPER_VERSION@">
3 <description>Provides the number of records retrieved in all Entrez databases by a single text query.</description>
4 <macros>
5 <import>macros.xml</import>
6 </macros>
7 <expand macro="requirements"/>
8 <version_command>python egquery.py --version</version_command>
9 <command detect_errors="aggressive" interpreter="python"><![CDATA[egquery.py
10 "$term"
11
12 @EMAIL_ARGUMENTS@
13 > $default]]></command>
14 <inputs>
15 <expand macro="dbselect"/>
16 <param label="Search Term" name="term" type="text">
17 <sanitizer>
18 <valid>
19 <add value="'"/>
20 <add value="["/>
21 <add value="]"/>
22 </valid>
23 </sanitizer>
24 </param>
25 </inputs>
26 <outputs>
27 <data format="xml" name="default" label="EGQuery Results for $term"/>
28 <expand macro="history_out">
29 <filter>use_history</filter>
30 </expand>
31 </outputs>
32 <tests>
33 <test>
34 <param name="term" value="bacteriophage"/>
35 <output name="default" file="egquery.1.xml" compare="contains" ftype="xml"/>
36 </test>
37 </tests>
38 <help><![CDATA[
39 NCBI Entrez EGQuery
40 ===================
41
42 Provides the number of records retrieved in all Entrez databases by a single
43 text query.
44
45 Example Queries
46 ---------------
47
48 +----------------------+-------------+
49 | Parameter | Value |
50 +======================+=============+
51 | Term | Cancer |
52 +----------------------+-------------+
53
54 @REFERENCES@
55
56 @DISCLAIMER@
57 ]]></help>
58 <expand macro="citations"/>
59 </tool>