Mercurial > repos > iuc > ncbi_eutils_einfo

comparison einfo.xml @ 3:cd5a82a16bbf draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
author iuc
date Wed, 23 Sep 2020 09:49:45 +0000
parents f6007bce569d
children ad0e3818b6ae
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2:f6007bce569d 3:cd5a82a16bbf
5 <import>macros.xml</import> 5 <import>macros.xml</import>
6 </macros> 6 </macros>
7 <expand macro="requirements"/> 7 <expand macro="requirements"/>
8 <version_command>python einfo.py --version</version_command> 8 <version_command>python einfo.py --version</version_command>
9 <command detect_errors="aggressive"><![CDATA[ 9 <command detect_errors="aggressive"><![CDATA[
10 python '$__tool_directory__/einfo.py'
11 --db $db_select
12 10
13 @EMAIL_ARGUMENTS@ 11 python '$__tool_directory__/einfo.py'
14 > $default]]></command> 12
13 #if $query_type.query_type == 'Description':
14 --db $query_type.db_select
15 #end if
16
17 @EMAIL_ARGUMENTS@
18
19 > $default
20
21 ]]></command>
15 <inputs> 22 <inputs>
16 <expand macro="dbselect"/> 23 <conditional name="query_type">
24 <param name="query_type" type="select" label="Database Information Request Type" help="List databases or describe a database.">
25 <option value="list" selected="True">List available databases</option>
26 <option value="Description">Describe a database</option>
27 </param>
28 <when value="list">
29 <param name="db_select" type="hidden" value="Database List"/>
30 </when>
31 <when value="Description">
32 <expand macro="dbselect"/>
33 </when>
34 </conditional>
17 </inputs> 35 </inputs>
18 <outputs> 36 <outputs>
19 <data format="xml" name="default" label="NCBI Database Information: $db_select"/> 37 <data format="xml" name="default" label="NCBI Database Information: $query_type.db_select"/>
20 </outputs> 38 </outputs>
21 <tests> 39 <tests>
22 <test> 40 <test>
41 <param name="query_type" value="Description"/>
23 <param name="db_select" value="pubmed"/> 42 <param name="db_select" value="pubmed"/>
24 <output name="default" file="pubmed.metadata.xml" compare="contains" ftype="xml"/> 43 <output name="default" file="pubmed.metadata.xml" compare="contains" ftype="xml"/>
44 </test>
45 <test>
46 <param name="query_type" value="list"/>
47 <param name="db_select" value="Database list"/>
48 <output name="default" file="einfo.dblist.xml" ftype="xml"/>
25 </test> 49 </test>
26 </tests> 50 </tests>
27 <help><![CDATA[ 51 <help><![CDATA[
28 NCBI Entrez EInfo 52 NCBI Entrez EInfo
29 ================= 53 =================