view egquery.py @ 7:98365d44f1fa draft

"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dc7c7e808d6482dd32f6bc0d9c14ac83007ca425"
author iuc
date Sat, 27 Nov 2021 09:51:45 +0000
parents 55b3067762f9
children
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#!/usr/bin/env python

import argparse

import eutils


if __name__ == '__main__':
    parser = argparse.ArgumentParser(description='EGQuery', epilog='')
    parser.add_argument('term', help='Query')

    parser.add_argument('--user_email', help="User email")
    parser.add_argument('--admin_email', help="Admin email")

    parser.add_argument('--version', action='version', version=eutils.Client.getVersion(), help='Version (reports Biopython version)')

    args = parser.parse_args()

    c = eutils.Client(user_email=args.user_email, admin_email=args.admin_email)

    payload = {
        'term': args.term,
    }
    results = c.gquery(**payload)
    print(results)