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comparison macros.xml @ 3:254f40d3ae2b draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit dae34e5e182b4cceb808d7353080f14aa9a78ca9"
author iuc
date Wed, 23 Sep 2020 09:50:11 +0000
parents cb5a0fe9e036
children 82e10809842f
comparison
equal deleted inserted replaced
2:cb5a0fe9e036 3:254f40d3ae2b
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <macros> 2 <macros>
3 <token name="@PROFILE@">18.01</token> 3 <token name="@PROFILE@">18.01</token>
4 <token name="@WRAPPER_VERSION@">1.3</token> 4 <token name="@WRAPPER_VERSION@">1.70</token>
5 <token name="@EMAIL_ARGUMENTS@"> 5 <token name="@EMAIL_ARGUMENTS@">
6 --user_email "$__user_email__" 6 --user_email "$__user_email__"
7 #set admin_emails = ';'.join(str($__admin_users__).split(',')) 7 #set admin_emails = ';'.join(str($__admin_users__).split(','))
8 --admin_email "$admin_emails" 8 --admin_email "$admin_emails"
9 </token> 9 </token>
84 external sites will abide by the same Privacy Policy to which NCBI 84 external sites will abide by the same Privacy Policy to which NCBI
85 adheres. It is the responsibility of the user to examine the copyright 85 adheres. It is the responsibility of the user to examine the copyright
86 and licensing restrictions of linked pages and to secure all necessary 86 and licensing restrictions of linked pages and to secure all necessary
87 permissions. 87 permissions.
88 ]]></token> 88 ]]></token>
89 <xml name="dbselect"
90 token_name="db_select"
91 token_label="NCBI Database to Use"
92 >
93 <param name="@NAME@" type="select" label="@LABEL@">
94 <option value="annotinfo">Annotation Information</option>
95 <option value="assembly">Assembly</option>
96 <option value="bioproject">BioProject</option>
97 <option value="biosample">BioSample</option>
98 <option value="biosystems">Biosystems</option>
99 <option value="blastdbinfo">Blast Database Information</option>
100 <option value="books">Books</option>
101 <option value="cdd">Conserved Domains</option>
102 <option value="clinvar">Clinical Variants</option>
103 <option value="clone">CLone</option>
104 <option value="dbvar">dbVar</option>
105 <option value="gap">dbGaP</option>
106 <option value="gapplus">gapplus</option>
107 <option value="gds">GEO Datasets</option>
108 <option value="gencoll">Gencoll</option>
109 <option value="gene">Gene</option>
110 <option value="genome">Genome</option>
111 <option value="geoprofiles">GEO Profiles</option>
112 <option value="grasp">grasp</option>
113 <option value="gtr">Genetic Testing Registry</option>
114 <option value="homologene">HomoloGene</option>
115 <option value="medgen">MedGen</option>
116 <option value="mesh">MeSH</option>
117 <option value="ncbisearch">NCBI Web Site</option>
118 <option value="nlmcatalog">NLM Catalog</option>
119 <option value="nuccore">Nuccore</option>
120 <option value="nucest">EST</option>
121 <option value="nucgss">GSS</option>
122 <option value="nucleotide">Nucleotide</option>
123 <option value="omim">OMIM</option>
124 <option value="orgtrack">Orgtrack</option>
125 <option value="pcassay">PubChem BioAssay</option>
126 <option value="pccompound">PubChem Compound</option>
127 <option value="pcsubstance">PubChem Substance</option>
128 <option value="pmc">PubMed Central</option>
129 <option value="popset">PopSet</option>
130 <option value="probe">Probe</option>
131 <option value="protein">Protein</option>
132 <option value="proteinclusters">Protein Clusters</option>
133 <option value="pubmed">PubMed</option>
134 <option value="pubmedhealth">PubMed Health</option>
135 <option value="seqannot">seqannot</option>
136 <option value="snp">SNP</option>
137 <option value="sra">SRA</option>
138 <option value="structure">Structure</option>
139 <option value="taxonomy">Taxonomy</option>
140 <option value="unigene">UniGene</option>
141 </param>
142 </xml>
143 <xml name="db">
144 <conditional name="db">
145 <expand macro="dbselect" />
146 <when value="annotinfo">
147 <param name="output_format" type="select" label="Output Format">
148 <option value="docsum-json">Document Summary (json)</option>
149 <option value="docsum-xml">Document Summary (xml)</option>
150 <option value="full-text">Full Document (text)</option>
151 <option value="full-xml">Full Document (xml)</option>
152 <option value="uilist-text">Unique Identifier List (text)</option>
153 <option value="uilist-xml">Unique Identifier List (xml)</option>
154 </param>
155 </when>
156 <when value="assembly">
157 <param name="output_format" type="select" label="Output Format">
158 <option value="docsum-json">Document Summary (json)</option>
159 <option value="docsum-xml">Document Summary (xml)</option>
160 <option value="full-text">Full Document (text)</option>
161 <option value="full-xml">Full Document (xml)</option>
162 <option value="uilist-text">Unique Identifier List (text)</option>
163 <option value="uilist-xml">Unique Identifier List (xml)</option>
164 </param>
165 </when>
166 <when value="bioproject">
167 <param name="output_format" type="select" label="Output Format">
168 <option value="docsum-json">Document Summary (json)</option>
169 <option value="docsum-xml">Document Summary (xml)</option>
170 <option value="full-text">Full Document (text)</option>
171 <option value="full-xml">Full Document (xml)</option>
172 <option value="native-None">BioProject Report</option>
173 <option value="native-xml">RecordSet (xml)</option>
174 <option value="uilist-text">Unique Identifier List (text)</option>
175 <option value="uilist-xml">Unique Identifier List (xml)</option>
176 </param>
177 </when>
178 <when value="biosample">
179 <param name="output_format" type="select" label="Output Format">
180 <option value="docsum-json">Document Summary (json)</option>
181 <option value="docsum-xml">Document Summary (xml)</option>
182 <option value="full-text">Full Document (text)</option>
183 <option value="full-xml">Full Document (xml)</option>
184 <option value="native-None">BioSample Report</option>
185 <option value="native-xml">BioSampleSet (xml)</option>
186 <option value="uilist-text">Unique Identifier List (text)</option>
187 <option value="uilist-xml">Unique Identifier List (xml)</option>
188 </param>
189 </when>
190 <when value="biosystems">
191 <param name="output_format" type="select" label="Output Format">
192 <option value="docsum-json">Document Summary (json)</option>
193 <option value="docsum-xml">Document Summary (xml)</option>
194 <option value="full-text">Full Document (text)</option>
195 <option value="full-xml">Full Document (xml)</option>
196 <option value="native-xml">Sys-set (xml)</option>
197 <option value="uilist-text">Unique Identifier List (text)</option>
198 <option value="uilist-xml">Unique Identifier List (xml)</option>
199 </param>
200 </when>
201 <when value="blastdbinfo">
202 <param name="output_format" type="select" label="Output Format">
203 <option value="docsum-json">Document Summary (json)</option>
204 <option value="docsum-xml">Document Summary (xml)</option>
205 <option value="full-text">Full Document (text)</option>
206 <option value="full-xml">Full Document (xml)</option>
207 <option value="uilist-text">Unique Identifier List (text)</option>
208 <option value="uilist-xml">Unique Identifier List (xml)</option>
209 </param>
210 </when>
211 <when value="books">
212 <param name="output_format" type="select" label="Output Format">
213 <option value="docsum-json">Document Summary (json)</option>
214 <option value="docsum-xml">Document Summary (xml)</option>
215 <option value="full-text">Full Document (text)</option>
216 <option value="full-xml">Full Document (xml)</option>
217 <option value="uilist-text">Unique Identifier List (text)</option>
218 <option value="uilist-xml">Unique Identifier List (xml)</option>
219 </param>
220 </when>
221 <when value="cdd">
222 <param name="output_format" type="select" label="Output Format">
223 <option value="docsum-json">Document Summary (json)</option>
224 <option value="docsum-xml">Document Summary (xml)</option>
225 <option value="full-text">Full Document (text)</option>
226 <option value="full-xml">Full Document (xml)</option>
227 <option value="uilist-text">Unique Identifier List (text)</option>
228 <option value="uilist-xml">Unique Identifier List (xml)</option>
229 </param>
230 </when>
231 <when value="clinvar">
232 <param name="output_format" type="select" label="Output Format">
233 <option value="docsum-json">Document Summary (json)</option>
234 <option value="docsum-xml">Document Summary (xml)</option>
235 <option value="full-text">Full Document (text)</option>
236 <option value="full-xml">Full Document (xml)</option>
237 <option value="uilist-text">Unique Identifier List (text)</option>
238 <option value="uilist-xml">Unique Identifier List (xml)</option>
239 </param>
240 </when>
241 <when value="clone">
242 <param name="output_format" type="select" label="Output Format">
243 <option value="docsum-json">Document Summary (json)</option>
244 <option value="docsum-xml">Document Summary (xml)</option>
245 <option value="full-text">Full Document (text)</option>
246 <option value="full-xml">Full Document (xml)</option>
247 <option value="uilist-text">Unique Identifier List (text)</option>
248 <option value="uilist-xml">Unique Identifier List (xml)</option>
249 </param>
250 </when>
251 <when value="dbvar">
252 <param name="output_format" type="select" label="Output Format">
253 <option value="docsum-json">Document Summary (json)</option>
254 <option value="docsum-xml">Document Summary (xml)</option>
255 <option value="full-text">Full Document (text)</option>
256 <option value="full-xml">Full Document (xml)</option>
257 <option value="uilist-text">Unique Identifier List (text)</option>
258 <option value="uilist-xml">Unique Identifier List (xml)</option>
259 </param>
260 </when>
261 <when value="gap">
262 <param name="output_format" type="select" label="Output Format">
263 <option value="docsum-json">Document Summary (json)</option>
264 <option value="docsum-xml">Document Summary (xml)</option>
265 <option value="full-text">Full Document (text)</option>
266 <option value="full-xml">Full Document (xml)</option>
267 <option value="uilist-text">Unique Identifier List (text)</option>
268 <option value="uilist-xml">Unique Identifier List (xml)</option>
269 </param>
270 </when>
271 <when value="gapplus">
272 <param name="output_format" type="select" label="Output Format">
273 <option value="docsum-json">Document Summary (json)</option>
274 <option value="docsum-xml">Document Summary (xml)</option>
275 <option value="full-text">Full Document (text)</option>
276 <option value="full-xml">Full Document (xml)</option>
277 <option value="uilist-text">Unique Identifier List (text)</option>
278 <option value="uilist-xml">Unique Identifier List (xml)</option>
279 </param>
280 </when>
281 <when value="gds">
282 <param name="output_format" type="select" label="Output Format">
283 <option value="docsum-json">Document Summary (json)</option>
284 <option value="docsum-xml">Document Summary (xml)</option>
285 <option value="full-text">Full Document (text)</option>
286 <option value="full-xml">Full Document (xml)</option>
287 <option value="native-xml">RecordSet (xml)</option>
288 <option value="summary-text">Summary (text)</option>
289 <option value="uilist-text">Unique Identifier List (text)</option>
290 <option value="uilist-xml">Unique Identifier List (xml)</option>
291 </param>
292 </when>
293 <when value="gencoll">
294 <param name="output_format" type="select" label="Output Format">
295 <option value="docsum-json">Document Summary (json)</option>
296 <option value="docsum-xml">Document Summary (xml)</option>
297 <option value="full-text">Full Document (text)</option>
298 <option value="full-xml">Full Document (xml)</option>
299 <option value="uilist-text">Unique Identifier List (text)</option>
300 <option value="uilist-xml">Unique Identifier List (xml)</option>
301 </param>
302 </when>
303 <when value="gene">
304 <param name="output_format" type="select" label="Output Format">
305 <option value="docsum-json">Document Summary (json)</option>
306 <option value="docsum-xml">Document Summary (xml)</option>
307 <option value="full-text">Full Document (text)</option>
308 <option value="full-xml">Full Document (xml)</option>
309 <option value="gene_table-xml">Gene Table (xml)</option>
310 <option value="native-asn.1">Entrezgene (asn.1)</option>
311 <option value="native-text">Gene Report (text)</option>
312 <option value="native-xml">Entrezgene-Set (xml)</option>
313 <option value="tabular-tabular">Tabular Report (tabular)</option>
314 <option value="uilist-text">Unique Identifier List (text)</option>
315 <option value="uilist-xml">Unique Identifier List (xml)</option>
316 </param>
317 </when>
318 <when value="genome">
319 <param name="output_format" type="select" label="Output Format">
320 <option value="docsum-json">Document Summary (json)</option>
321 <option value="docsum-xml">Document Summary (xml)</option>
322 <option value="full-text">Full Document (text)</option>
323 <option value="full-xml">Full Document (xml)</option>
324 <option value="uilist-text">Unique Identifier List (text)</option>
325 <option value="uilist-xml">Unique Identifier List (xml)</option>
326 </param>
327 </when>
328 <when value="geoprofiles">
329 <param name="output_format" type="select" label="Output Format">
330 <option value="docsum-json">Document Summary (json)</option>
331 <option value="docsum-xml">Document Summary (xml)</option>
332 <option value="full-text">Full Document (text)</option>
333 <option value="full-xml">Full Document (xml)</option>
334 <option value="uilist-text">Unique Identifier List (text)</option>
335 <option value="uilist-xml">Unique Identifier List (xml)</option>
336 </param>
337 </when>
338 <when value="grasp">
339 <param name="output_format" type="select" label="Output Format">
340 <option value="docsum-json">Document Summary (json)</option>
341 <option value="docsum-xml">Document Summary (xml)</option>
342 <option value="full-text">Full Document (text)</option>
343 <option value="full-xml">Full Document (xml)</option>
344 <option value="uilist-text">Unique Identifier List (text)</option>
345 <option value="uilist-xml">Unique Identifier List (xml)</option>
346 </param>
347 </when>
348 <when value="gtr">
349 <param name="output_format" type="select" label="Output Format">
350 <option value="docsum-json">Document Summary (json)</option>
351 <option value="docsum-xml">Document Summary (xml)</option>
352 <option value="full-text">Full Document (text)</option>
353 <option value="full-xml">Full Document (xml)</option>
354 <option value="uilist-text">Unique Identifier List (text)</option>
355 <option value="uilist-xml">Unique Identifier List (xml)</option>
356 </param>
357 </when>
358 <when value="homologene">
359 <param name="output_format" type="select" label="Output Format">
360 <option value="alignmentscores-text">Alignment Scores (text)</option>
361 <option value="docsum-json">Document Summary (json)</option>
362 <option value="docsum-xml">Document Summary (xml)</option>
363 <option value="fasta-fasta">FASTA (fasta)</option>
364 <option value="full-text">Full Document (text)</option>
365 <option value="full-xml">Full Document (xml)</option>
366 <option value="homologene-text">Homologene Report (text)</option>
367 <option value="native-asn.1">HG-Entry (asn.1)</option>
368 <option value="native-text">Homologene List (text)</option>
369 <option value="native-xml">Entrez-Homologene-Set (xml)</option>
370 <option value="uilist-text">Unique Identifier List (text)</option>
371 <option value="uilist-xml">Unique Identifier List (xml)</option>
372 </param>
373 </when>
374 <when value="medgen">
375 <param name="output_format" type="select" label="Output Format">
376 <option value="docsum-json">Document Summary (json)</option>
377 <option value="docsum-xml">Document Summary (xml)</option>
378 <option value="full-text">Full Document (text)</option>
379 <option value="full-xml">Full Document (xml)</option>
380 <option value="uilist-text">Unique Identifier List (text)</option>
381 <option value="uilist-xml">Unique Identifier List (xml)</option>
382 </param>
383 </when>
384 <when value="mesh">
385 <param name="output_format" type="select" label="Output Format">
386 <option value="docsum-json">Document Summary (json)</option>
387 <option value="docsum-xml">Document Summary (xml)</option>
388 <option value="full-text">Full Document (text)</option>
389 <option value="full-text">Full Record (text)</option>
390 <option value="full-xml">Full Document (xml)</option>
391 <option value="native-text">MeSH Report (text)</option>
392 <option value="native-xml">RecordSet (xml)</option>
393 <option value="uilist-text">Unique Identifier List (text)</option>
394 <option value="uilist-xml">Unique Identifier List (xml)</option>
395 </param>
396 </when>
397 <when value="ncbisearch">
398 <param name="output_format" type="select" label="Output Format">
399 <option value="docsum-json">Document Summary (json)</option>
400 <option value="docsum-xml">Document Summary (xml)</option>
401 <option value="full-text">Full Document (text)</option>
402 <option value="full-xml">Full Document (xml)</option>
403 <option value="uilist-text">Unique Identifier List (text)</option>
404 <option value="uilist-xml">Unique Identifier List (xml)</option>
405 </param>
406 </when>
407 <when value="nlmcatalog">
408 <param name="output_format" type="select" label="Output Format">
409 <option value="docsum-json">Document Summary (json)</option>
410 <option value="docsum-xml">Document Summary (xml)</option>
411 <option value="full-text">Full Document (text)</option>
412 <option value="full-xml">Full Document (xml)</option>
413 <option value="native-text">Full Record (text)</option>
414 <option value="native-xml">NLMCatalogRecordSet (xml)</option>
415 <option value="uilist-text">Unique Identifier List (text)</option>
416 <option value="uilist-xml">Unique Identifier List (xml)</option>
417 </param>
418 </when>
419 <when value="nuccore">
420 <param name="output_format" type="select" label="Output Format">
421 <option value="acc-text">Accession Number (text)</option>
422 <option value="docsum-json">Document Summary (json)</option>
423 <option value="docsum-xml">Document Summary (xml)</option>
424 <option value="est-xml">EST Report (xml)</option>
425 <option value="fasta-fasta">FASTA (fasta)</option>
426 <option value="fasta-xml">TinySeq (xml)</option>
427 <option value="fasta_cds_aa-fasta">CDS Products (fasta)</option>
428 <option value="fasta_cds_na-fasta">Coding Regions (fasta)</option>
429 <option value="ft-text">Feature Table (text)</option>
430 <option value="full-text">Full Document (text)</option>
431 <option value="full-xml">Full Document (xml)</option>
432 <option value="gb-text">GenBank Flatfile (text)</option>
433 <option value="gb-xml">GBSet (xml)</option>
434 <option value="gbc-xml">INSDSet (xml)</option>
435 <option value="gbwithparts-text">GenBank with Contig Sequences (text)</option>
436 <option value="gene_fasta-fasta">FASTA of Gene (fasta)</option>
437 <option value="gp-text">GenPept Flatfile (text)</option>
438 <option value="gp-xml">GBSet (xml)</option>
439 <option value="gpc-xml">INSDSet (xml)</option>
440 <option value="gss-text">GSS Report (text)</option>
441 <option value="ipg-text">Identical Protein Report (text)</option>
442 <option value="ipg-xml">IPGReportSet (xml)</option>
443 <option value="native-text">Seq-entry (text)</option>
444 <option value="native-xml">Bioseq-set (xml)</option>
445 <option value="seqid-asn.1">Seq-id (asn.1)</option>
446 <option value="uilist-text">Unique Identifier List (text)</option>
447 <option value="uilist-xml">Unique Identifier List (xml)</option>
448 </param>
449 </when>
450 <when value="nucest">
451 <param name="output_format" type="select" label="Output Format">
452 <option value="acc-text">Accession Number (text)</option>
453 <option value="docsum-json">Document Summary (json)</option>
454 <option value="docsum-xml">Document Summary (xml)</option>
455 <option value="est-xml">EST Report (xml)</option>
456 <option value="fasta-fasta">FASTA (fasta)</option>
457 <option value="fasta-xml">TinySeq (xml)</option>
458 <option value="fasta_cds_aa-fasta">CDS Products (fasta)</option>
459 <option value="fasta_cds_na-fasta">Coding Regions (fasta)</option>
460 <option value="ft-text">Feature Table (text)</option>
461 <option value="full-text">Full Document (text)</option>
462 <option value="full-xml">Full Document (xml)</option>
463 <option value="gb-text">GenBank Flatfile (text)</option>
464 <option value="gb-xml">GBSet (xml)</option>
465 <option value="gbc-xml">INSDSet (xml)</option>
466 <option value="gbwithparts-text">GenBank with Contig Sequences (text)</option>
467 <option value="gene_fasta-fasta">FASTA of Gene (fasta)</option>
468 <option value="gp-text">GenPept Flatfile (text)</option>
469 <option value="gp-xml">GBSet (xml)</option>
470 <option value="gpc-xml">INSDSet (xml)</option>
471 <option value="gss-text">GSS Report (text)</option>
472 <option value="ipg-text">Identical Protein Report (text)</option>
473 <option value="ipg-xml">IPGReportSet (xml)</option>
474 <option value="native-text">Seq-entry (text)</option>
475 <option value="native-xml">Bioseq-set (xml)</option>
476 <option value="seqid-asn.1">Seq-id (asn.1)</option>
477 <option value="uilist-text">Unique Identifier List (text)</option>
478 <option value="uilist-xml">Unique Identifier List (xml)</option>
479 </param>
480 </when>
481 <when value="nucgss">
482 <param name="output_format" type="select" label="Output Format">
483 <option value="acc-text">Accession Number (text)</option>
484 <option value="docsum-json">Document Summary (json)</option>
485 <option value="docsum-xml">Document Summary (xml)</option>
486 <option value="est-xml">EST Report (xml)</option>
487 <option value="fasta-fasta">FASTA (fasta)</option>
488 <option value="fasta-xml">TinySeq (xml)</option>
489 <option value="fasta_cds_aa-fasta">CDS Products (fasta)</option>
490 <option value="fasta_cds_na-fasta">Coding Regions (fasta)</option>
491 <option value="ft-text">Feature Table (text)</option>
492 <option value="full-text">Full Document (text)</option>
493 <option value="full-xml">Full Document (xml)</option>
494 <option value="gb-text">GenBank Flatfile (text)</option>
495 <option value="gb-xml">GBSet (xml)</option>
496 <option value="gbc-xml">INSDSet (xml)</option>
497 <option value="gbwithparts-text">GenBank with Contig Sequences (text)</option>
498 <option value="gene_fasta-fasta">FASTA of Gene (fasta)</option>
499 <option value="gp-text">GenPept Flatfile (text)</option>
500 <option value="gp-xml">GBSet (xml)</option>
501 <option value="gpc-xml">INSDSet (xml)</option>
502 <option value="gss-text">GSS Report (text)</option>
503 <option value="ipg-text">Identical Protein Report (text)</option>
504 <option value="ipg-xml">IPGReportSet (xml)</option>
505 <option value="native-text">Seq-entry (text)</option>
506 <option value="native-xml">Bioseq-set (xml)</option>
507 <option value="seqid-asn.1">Seq-id (asn.1)</option>
508 <option value="uilist-text">Unique Identifier List (text)</option>
509 <option value="uilist-xml">Unique Identifier List (xml)</option>
510 </param>
511 </when>
512 <when value="nucleotide">
513 <param name="output_format" type="select" label="Output Format">
514 <option value="acc-text">Accession Number (text)</option>
515 <option value="docsum-json">Document Summary (json)</option>
516 <option value="docsum-xml">Document Summary (xml)</option>
517 <option value="est-xml">EST Report (xml)</option>
518 <option value="fasta-fasta">FASTA (fasta)</option>
519 <option value="fasta-xml">TinySeq (xml)</option>
520 <option value="fasta_cds_aa-fasta">CDS Products (fasta)</option>
521 <option value="fasta_cds_na-fasta">Coding Regions (fasta)</option>
522 <option value="ft-text">Feature Table (text)</option>
523 <option value="full-text">Full Document (text)</option>
524 <option value="full-xml">Full Document (xml)</option>
525 <option value="gb-text">GenBank Flatfile (text)</option>
526 <option value="gb-xml">GBSet (xml)</option>
527 <option value="gbc-xml">INSDSet (xml)</option>
528 <option value="gbwithparts-text">GenBank with Contig Sequences (text)</option>
529 <option value="gene_fasta-fasta">FASTA of Gene (fasta)</option>
530 <option value="gp-text">GenPept Flatfile (text)</option>
531 <option value="gp-xml">GBSet (xml)</option>
532 <option value="gpc-xml">INSDSet (xml)</option>
533 <option value="gss-text">GSS Report (text)</option>
534 <option value="ipg-text">Identical Protein Report (text)</option>
535 <option value="ipg-xml">IPGReportSet (xml)</option>
536 <option value="native-text">Seq-entry (text)</option>
537 <option value="native-xml">Bioseq-set (xml)</option>
538 <option value="seqid-asn.1">Seq-id (asn.1)</option>
539 <option value="uilist-text">Unique Identifier List (text)</option>
540 <option value="uilist-xml">Unique Identifier List (xml)</option>
541 </param>
542 </when>
543 <when value="omim">
544 <param name="output_format" type="select" label="Output Format">
545 <option value="docsum-json">Document Summary (json)</option>
546 <option value="docsum-xml">Document Summary (xml)</option>
547 <option value="full-text">Full Document (text)</option>
548 <option value="full-xml">Full Document (xml)</option>
549 <option value="uilist-text">Unique Identifier List (text)</option>
550 <option value="uilist-xml">Unique Identifier List (xml)</option>
551 </param>
552 </when>
553 <when value="orgtrack">
554 <param name="output_format" type="select" label="Output Format">
555 <option value="docsum-json">Document Summary (json)</option>
556 <option value="docsum-xml">Document Summary (xml)</option>
557 <option value="full-text">Full Document (text)</option>
558 <option value="full-xml">Full Document (xml)</option>
559 <option value="uilist-text">Unique Identifier List (text)</option>
560 <option value="uilist-xml">Unique Identifier List (xml)</option>
561 </param>
562 </when>
563 <when value="pcassay">
564 <param name="output_format" type="select" label="Output Format">
565 <option value="docsum-json">Document Summary (json)</option>
566 <option value="docsum-xml">Document Summary (xml)</option>
567 <option value="full-text">Full Document (text)</option>
568 <option value="full-xml">Full Document (xml)</option>
569 <option value="uilist-text">Unique Identifier List (text)</option>
570 <option value="uilist-xml">Unique Identifier List (xml)</option>
571 </param>
572 </when>
573 <when value="pccompound">
574 <param name="output_format" type="select" label="Output Format">
575 <option value="docsum-json">Document Summary (json)</option>
576 <option value="docsum-xml">Document Summary (xml)</option>
577 <option value="full-text">Full Document (text)</option>
578 <option value="full-xml">Full Document (xml)</option>
579 <option value="uilist-text">Unique Identifier List (text)</option>
580 <option value="uilist-xml">Unique Identifier List (xml)</option>
581 </param>
582 </when>
583 <when value="pcsubstance">
584 <param name="output_format" type="select" label="Output Format">
585 <option value="docsum-json">Document Summary (json)</option>
586 <option value="docsum-xml">Document Summary (xml)</option>
587 <option value="full-text">Full Document (text)</option>
588 <option value="full-xml">Full Document (xml)</option>
589 <option value="uilist-text">Unique Identifier List (text)</option>
590 <option value="uilist-xml">Unique Identifier List (xml)</option>
591 </param>
592 </when>
593 <when value="pmc">
594 <param name="output_format" type="select" label="Output Format">
595 <option value="docsum-json">Document Summary (json)</option>
596 <option value="docsum-xml">Document Summary (xml)</option>
597 <option value="full-text">Full Document (text)</option>
598 <option value="full-xml">Full Document (xml)</option>
599 <option value="medline-text">MEDLINE (text)</option>
600 <option value="native-xml">pmc-articleset (xml)</option>
601 <option value="uilist-text">Unique Identifier List (text)</option>
602 <option value="uilist-xml">Unique Identifier List (xml)</option>
603 </param>
604 </when>
605 <when value="popset">
606 <param name="output_format" type="select" label="Output Format">
607 <option value="docsum-json">Document Summary (json)</option>
608 <option value="docsum-xml">Document Summary (xml)</option>
609 <option value="full-text">Full Document (text)</option>
610 <option value="full-xml">Full Document (xml)</option>
611 <option value="uilist-text">Unique Identifier List (text)</option>
612 <option value="uilist-xml">Unique Identifier List (xml)</option>
613 </param>
614 </when>
615 <when value="probe">
616 <param name="output_format" type="select" label="Output Format">
617 <option value="docsum-json">Document Summary (json)</option>
618 <option value="docsum-xml">Document Summary (xml)</option>
619 <option value="full-text">Full Document (text)</option>
620 <option value="full-xml">Full Document (xml)</option>
621 <option value="uilist-text">Unique Identifier List (text)</option>
622 <option value="uilist-xml">Unique Identifier List (xml)</option>
623 </param>
624 </when>
625 <when value="protein">
626 <param name="output_format" type="select" label="Output Format">
627 <option value="docsum-json">Document Summary (json)</option>
628 <option value="docsum-xml">Document Summary (xml)</option>
629 <option value="full-text">Full Document (text)</option>
630 <option value="full-xml">Full Document (xml)</option>
631 <option value="uilist-text">Unique Identifier List (text)</option>
632 <option value="uilist-xml">Unique Identifier List (xml)</option>
633 </param>
634 </when>
635 <when value="proteinclusters">
636 <param name="output_format" type="select" label="Output Format">
637 <option value="docsum-json">Document Summary (json)</option>
638 <option value="docsum-xml">Document Summary (xml)</option>
639 <option value="full-text">Full Document (text)</option>
640 <option value="full-xml">Full Document (xml)</option>
641 <option value="uilist-text">Unique Identifier List (text)</option>
642 <option value="uilist-xml">Unique Identifier List (xml)</option>
643 </param>
644 </when>
645 <when value="pubmed">
646 <param name="output_format" type="select" label="Output Format">
647 <option value="abstract-xml">Abstract (xml)</option>
648 <option value="docsum-json">Document Summary (json)</option>
649 <option value="docsum-xml">Document Summary (xml)</option>
650 <option value="full-text">Full Document (text)</option>
651 <option value="full-xml">Full Document (xml)</option>
652 <option value="medline-text">MEDLINE (text)</option>
653 <option value="native-asn.1">Pubmed-entry (asn.1)</option>
654 <option value="native-xml">PubmedArticleSet (xml)</option>
655 <option value="uilist-text">Unique Identifier List (text)</option>
656 <option value="uilist-xml">Unique Identifier List (xml)</option>
657 </param>
658 </when>
659 <when value="pubmedhealth">
660 <param name="output_format" type="select" label="Output Format">
661 <option value="docsum-json">Document Summary (json)</option>
662 <option value="docsum-xml">Document Summary (xml)</option>
663 <option value="full-text">Full Document (text)</option>
664 <option value="full-xml">Full Document (xml)</option>
665 <option value="uilist-text">Unique Identifier List (text)</option>
666 <option value="uilist-xml">Unique Identifier List (xml)</option>
667 </param>
668 </when>
669 <when value="seqannot">
670 <param name="output_format" type="select" label="Output Format">
671 <option value="docsum-json">Document Summary (json)</option>
672 <option value="docsum-xml">Document Summary (xml)</option>
673 <option value="full-text">Full Document (text)</option>
674 <option value="full-xml">Full Document (xml)</option>
675 <option value="uilist-text">Unique Identifier List (text)</option>
676 <option value="uilist-xml">Unique Identifier List (xml)</option>
677 </param>
678 </when>
679 <when value="snp">
680 <param name="output_format" type="select" label="Output Format">
681 <option value="chr-text">Chromosome Report (text)</option>
682 <option value="docset-text">Summary (text)</option>
683 <option value="docsum-json">Document Summary (json)</option>
684 <option value="docsum-xml">Document Summary (xml)</option>
685 <option value="fasta-fasta">FASTA (fasta)</option>
686 <option value="flt-text">Flat File (text)</option>
687 <option value="full-text">Full Document (text)</option>
688 <option value="full-xml">Full Document (xml)</option>
689 <option value="native-asn.1">Rs (asn.1)</option>
690 <option value="native-xml">ExchangeSet (xml)</option>
691 <option value="rsr-tabular">RS Cluster Report (tabular)</option>
692 <option value="ssexemplar-text">SS Exemplar List (text)</option>
693 <option value="uilist-text">Unique Identifier List (text)</option>
694 <option value="uilist-xml">Unique Identifier List (xml)</option>
695 </param>
696 </when>
697 <when value="sra">
698 <param name="output_format" type="select" label="Output Format">
699 <option value="docsum-json">Document Summary (json)</option>
700 <option value="docsum-xml">Document Summary (xml)</option>
701 <option value="full-text">Full Document (text)</option>
702 <option value="full-xml">Full Document (xml)</option>
703 <option value="native-xml">EXPERIMENT_PACKAGE_SET (xml)</option>
704 <option value="runinfo-xml">SraRunInfo (xml)</option>
705 <option value="uilist-text">Unique Identifier List (text)</option>
706 <option value="uilist-xml">Unique Identifier List (xml)</option>
707 </param>
708 </when>
709 <when value="structure">
710 <param name="output_format" type="select" label="Output Format">
711 <option value="docsum-json">Document Summary (json)</option>
712 <option value="docsum-xml">Document Summary (xml)</option>
713 <option value="full-text">Full Document (text)</option>
714 <option value="full-xml">Full Document (xml)</option>
715 <option value="mmdb-asn.1">Ncbi-mime-asn1 strucseq (asn.1)</option>
716 <option value="native-text">MMDB Report (text)</option>
717 <option value="native-xml">RecordSet (xml)</option>
718 <option value="uilist-text">Unique Identifier List (text)</option>
719 <option value="uilist-xml">Unique Identifier List (xml)</option>
720 </param>
721 </when>
722 <when value="taxonomy">
723 <param name="output_format" type="select" label="Output Format">
724 <option value="docsum-json">Document Summary (json)</option>
725 <option value="docsum-xml">Document Summary (xml)</option>
726 <option value="full-text">Full Document (text)</option>
727 <option value="full-xml">Full Document (xml)</option>
728 <option value="native-text">Taxonomy List (text)</option>
729 <option value="native-xml">TaxaSet (xml)</option>
730 <option value="uilist-text">Unique Identifier List (text)</option>
731 <option value="uilist-xml">Unique Identifier List (xml)</option>
732 </param>
733 </when>
734 <when value="unigene">
735 <param name="output_format" type="select" label="Output Format">
736 <option value="docsum-json">Document Summary (json)</option>
737 <option value="docsum-xml">Document Summary (xml)</option>
738 <option value="full-text">Full Document (text)</option>
739 <option value="full-xml">Full Document (xml)</option>
740 <option value="uilist-text">Unique Identifier List (text)</option>
741 <option value="uilist-xml">Unique Identifier List (xml)</option>
742 </param>
743 </when>
744 </conditional>
745 </xml>
746
747 <xml name="efetch_formats">
748 <change_format>
749 <when input="output_format" value="fasta_cds_na-fasta" format="fasta"/>
750 <when input="output_format" value="ipg-xml" format="xml"/>
751 <when input="output_format" value="gbc-xml" format="xml"/>
752 <when input="output_format" value="medline-text" format="text"/>
753 <when input="output_format" value="native-None" format="text"/>
754 <when input="output_format" value="mmdb-asn.1" format="asn1"/>
755 <when input="output_format" value="seqid-asn.1" format="asn1"/>
756 <when input="output_format" value="acc-text" format="text"/>
757 <when input="output_format" value="summary-text" format="text"/>
758 <when input="output_format" value="gene_fasta-fasta" format="fasta"/>
759 <when input="output_format" value="native-text" format="text"/>
760 <when input="output_format" value="gbwithparts-text" format="text"/>
761 <when input="output_format" value="gpc-xml" format="xml"/>
762 <when input="output_format" value="fasta_cds_aa-fasta" format="fasta"/>
763 <when input="output_format" value="gp-text" format="text"/>
764 <when input="output_format" value="gss-text" format="text"/>
765 <when input="output_format" value="ipg-text" format="text"/>
766 <when input="output_format" value="uilist-xml" format="xml"/>
767 <when input="output_format" value="docsum-xml" format="xml"/>
768 <when input="output_format" value="rsr-tabular" format="tabular"/>
769 <when input="output_format" value="uilist-text" format="text"/>
770 <when input="output_format" value="gb-text" format="text"/>
771 <when input="output_format" value="chr-text" format="text"/>
772 <when input="output_format" value="alignmentscores-text" format="text"/>
773 <when input="output_format" value="native-asn.1" format="asn1"/>
774 <when input="output_format" value="gp-xml" format="xml"/>
775 <when input="output_format" value="tabular-tabular" format="tabular"/>
776 <when input="output_format" value="ssexemplar-text" format="text"/>
777 <when input="output_format" value="docsum-json" format="json"/>
778 <when input="output_format" value="fasta-xml" format="xml"/>
779 <when input="output_format" value="runinfo-xml" format="xml"/>
780 <when input="output_format" value="flt-text" format="text"/>
781 <when input="output_format" value="fasta-fasta" format="fasta"/>
782 <when input="output_format" value="full-text" format="text"/>
783 <when input="output_format" value="gb-xml" format="xml"/>
784 <when input="output_format" value="abstract-xml" format="xml"/>
785 <when input="output_format" value="full-xml" format="xml"/>
786 <when input="output_format" value="ft-text" format="text"/>
787 <when input="output_format" value="homologene-text" format="text"/>
788 <when input="output_format" value="est-xml" format="xml"/>
789 <when input="output_format" value="gene_table-xml" format="xml"/>
790 <when input="output_format" value="docset-text" format="text"/>
791 <when input="output_format" value="native-xml" format="xml"/>
792 </change_format>
793 </xml>
794 <token name="@LIST_OR_HIST@"> 89 <token name="@LIST_OR_HIST@">
795 #if $query_source.qss == "history": 90 #if $query_source.qss == "history_json":
796 --history_file $query_source.history_file 91 --history_file $query_source.history_file
92 #else if $query_source.qss == "history_xml":
93 --history_xml $query_source.history_xml
797 #else if $query_source.qss == "id_file": 94 #else if $query_source.qss == "id_file":
798 --id_list $query_source.id_file 95 --id_list $query_source.id_file
799 #else if $query_source.qss == "id_list": 96 #else if $query_source.qss == "id_list":
800 --id $query_source.id_list 97 --id $query_source.id_list
98 #else if $query_source.qss == "id_xml":
99 --id_xml $query_source.id_xml
100 #else if $query_source.qss == "id_json":
101 --id_json $query_source.id_json
801 #end if 102 #end if
802 </token> 103 </token>
803 <xml name="list_or_hist"> 104 <xml name="list_or_hist">
804 <conditional name="query_source"> 105 <conditional name="query_source">
805 <param name="qss" type="select" label="Select source for IDs"> 106 <param name="qss" type="select" label="Enter Query IDs by..." help="Files output by ELink or ESearch are acceptable. Query IDs in an ELink result are ignored.">
806 <option value="history">NCBI WebEnv History</option> 107 <option value="history_json">History File (JSON)</option>
807 <option value="id_file">File containing IDs (one per line)</option> 108 <option value="history_xml">History File (XML)</option>
808 <option value="id_list">Direct Entry</option> 109 <option value="id_file" selected="True">ID file (Tabular)</option>
110 <option value="id_xml">ID File (XML)</option>
111 <option value="id_json">ID File (JSON)</option>
112 <option value="id_list">Paste IDs</option>
809 </param> 113 </param>
810 <when value="history"> 114 <when value="history_json">
811 <param label="History File" name="history_file" type="data" format="json"/> 115 <param label="History File (JSON)" name="history_file" type="data" format="json" help="A JSON file containing the WebEnv ID and Query Key referencing the search on the NCBI history server"/>
116 </when>
117 <when value="history_xml">
118 <param label="History File (XML)" name="history_xml" type="data" format="xml" help="An XML file containing the WebEnv ID and Query Key referencing the search on the NCBI history server"/>
812 </when> 119 </when>
813 <when value="id_file"> 120 <when value="id_file">
814 <param label="ID List" name="id_file" type="data" format="text,tabular"/> 121 <param label="ID File (Text)" name="id_file" type="data" format="text,tabular" help="A Text file containing one ID per line"/>
122 </when>
123 <when value="id_xml">
124 <param label="ID File (XML)" name="id_xml" type="data" format="xml" help="ESearch or ELink Result XML file"/>
125 </when>
126 <when value="id_json">
127 <param label="ID File (JSON)" name="id_json" type="data" format="json" help="ESearch or ELink Result JSON file"/>
815 </when> 128 </when>
816 <when value="id_list"> 129 <when value="id_list">
817 <param label="ID List" name="id_list" type="text" area="true" help="Newline/Comma separated list of IDs"/> 130 <param label="Paste ID List" name="id_list" type="text" area="true" help="Newline/Comma separated list of IDs"/>
818 </when> 131 </when>
819 </conditional> 132 </conditional>
820 </xml>
821 <xml name="history_out">
822 <data format="json" name="history" label="NCBI Entrez WebEnv History">
823 <yield/>
824 </data>
825 </xml> 133 </xml>
826 <xml name="citations"> 134 <xml name="citations">
827 <citations> 135 <citations>
828 <citation type="bibtex">@Book{ncbiEutils, 136 <citation type="bibtex">@Book{ncbiEutils,
829 author = {Eric Sayers}, 137 author = {Eric Sayers},
834 }</citation> 142 }</citation>
835 </citations> 143 </citations>
836 </xml> 144 </xml>
837 <xml name="requirements"> 145 <xml name="requirements">
838 <requirements> 146 <requirements>
147 <requirement type="package" version="3">python</requirement>
839 <requirement type="package" version="1.70">biopython</requirement> 148 <requirement type="package" version="1.70">biopython</requirement>
840 </requirements> 149 </requirements>
841 </xml> 150 </xml>
842 <xml name="linkname"> 151 <token name="@EFETCH_FORMAT_TOKEN@">
843 <param name="linkname" type="select" label="To NCBI Database"> 152 <![CDATA[
844 <!-- TODO: https://eutils.ncbi.nlm.nih.gov/entrez/query/static/entrezlinks.html --> 153
154 ## This token must go at the end of the efetch command
155
156 #set rettype, retmode, format = str($db.output_format).split('-')
157
158 #if retmode != "none":
159 --retmode $retmode
160 #end if
161 ## Otherwise, defaults to a None/empty which implies 'default' to NCBI
162
163 #if rettype != "none":
164 --rettype $rettype
165 #end if
166
167 --galaxy_format $format
168
169 ]]>
170 </token>
171 <xml name="dbselect_efetch" token_name="db_select" token_label="NCBI Database to Query">
172 <param name="@NAME@" type="select" label="@LABEL@">
173 <option value="bioproject">BioProject (bioproject)</option>
174 <option value="biosample">BioSample (biosample)</option>
175 <option value="biosystems">BioSystems (biosystems)</option>
176 <option value="clinvar">ClinVar (clinvar)</option>
177 <option value="gds">GEO DataSets (gds)</option>
178 <option value="gtr">GTR (gtr)</option>
179 <option value="gene">Gene (gene)</option>
180 <option value="homologene">HomoloGene (homologene)</option>
181 <option value="mesh">MeSH (mesh)</option>
182 <option value="nlmcatalog">NLM Catalog (nlmcatalog)</option>
183 <option value="nuccore">Nucleotide (nuccore)</option>
184 <option value="pmc">PMC (pmc)</option>
185 <option value="popset">PopSet (popset)</option>
186 <option value="protein">Protein (protein)</option>
187 <option value="pubmed" selected="True">PubMed (pubmed)</option>
188 <option value="snp">SNP (snp)</option>
189 <option value="sra">SRA (sra)</option>
190 <option value="taxonomy">Taxonomy (taxonomy)</option>
845 </param> 191 </param>
846 </xml> 192 </xml>
193 <xml name="efetchdb">
194 <conditional name="db">
195 <expand macro="dbselect_efetch" />
196 <when value="bioproject">
197 <param name="output_format" type="select" label="Output Format">
198 <option value="docsum-xml-xml">Document summary (xml)</option>
199 <option value="xml-xml-xml">Full record (xml)</option>
200 <option value="uilist-text-tabular">List of UIDs (tabular)</option>
201 <option value="uilist-xml-xml">List of UIDs (xml)</option>
202 </param>
203 </when>
204 <when value="biosample">
205 <param name="output_format" type="select" label="Output Format">
206 <option value="docsum-xml-xml">Document summary (xml)</option>
207 <option value="full-text-txt">Full record (txt)</option>
208 <option value="full-xml-xml">Full record (xml)</option>
209 <option value="uilist-text-tabular">List of UIDs (tabular)</option>
210 <option value="uilist-xml-xml">List of UIDs (xml)</option>
211 </param>
212 </when>
213 <when value="biosystems">
214 <param name="output_format" type="select" label="Output Format">
215 <option value="docsum-xml-xml">Document summary (xml)</option>
216 <option value="xml-xml-xml">Full record (xml)</option>
217 <option value="uilist-text-tabular">List of UIDs (tabular)</option>
218 <option value="uilist-xml-xml">List of UIDs (xml)</option>
219 </param>
220 </when>
221 <when value="clinvar">
222 <param name="output_format" type="select" label="Output Format">
223 <option value="clinvarset-xml-xml">ClinVar Set (xml)</option>
224 <option value="docsum-xml-xml">Document summary (xml)</option>
225 <option value="none-none-xml">Full (xml)</option>
226 <option value="uilist-text-tabular">List of UIDs (tabular)</option>
227 <option value="uilist-xml-xml">List of UIDs (xml)</option>
228 </param>
229 </when>
230 <when value="gds">
231 <param name="output_format" type="select" label="Output Format">
232 <option value="docsum-xml-xml">Document summary (xml)</option>
233 <option value="none-none-xml">Full (xml)</option>
234 <option value="uilist-text-tabular">List of UIDs (tabular)</option>
235 <option value="uilist-xml-xml">List of UIDs (xml)</option>
236 <option value="summary-text-txt">Summary (txt)</option>
237 </param>
238 </when>
239 <when value="gtr">
240 <param name="output_format" type="select" label="Output Format">
241 <option value="docsum-xml-xml">Document summary (xml)</option>
242 <option value="none-none-xml">Full (xml)</option>
243 <option value="gtracc-xml-xml">GTR Test Report (xml)</option>
244 <option value="uilist-text-tabular">List of UIDs (tabular)</option>
245 <option value="uilist-xml-xml">List of UIDs (xml)</option>
246 </param>
247 </when>
248 <when value="gene">
249 <param name="output_format" type="select" label="Output Format">
250 <option value="docsum-xml-xml">Document summary (xml)</option>
251 <option value="none-xml-xml">Full (xml)</option>
252 <option value="gene_table-text-txt">Gene table (txt)</option>
253 <option value="uilist-text-tabular">List of UIDs (tabular)</option>
254 <option value="uilist-xml-xml">List of UIDs (xml)</option>
255 <option value="none-asn.1-txt">text ASN.1 (txt)</option>
256 </param>
257 </when>
258 <when value="homologene">
259 <param name="output_format" type="select" label="Output Format">
260 <option value="alignmentscores-text-tabular">Alignment scores (tabular)</option>
261 <option value="docsum-xml-xml">Document summary (xml)</option>
262 <option value="fasta-text-fasta">FASTA (fasta)</option>
263 <option value="none-xml-xml">Full (xml)</option>
264 <option value="homologene-text-txt">HomoloGene (txt)</option>
265 <option value="uilist-text-tabular">List of UIDs (tabular)</option>
266 <option value="uilist-xml-xml">List of UIDs (xml)</option>
267 <option value="none-asn.1-txt">text ASN.1 (txt)</option>
268 </param>
269 </when>
270 <when value="mesh">
271 <param name="output_format" type="select" label="Output Format">
272 <option value="docsum-xml-xml">Document summary (xml)</option>
273 <option value="full-text-txt">Full record (txt)</option>
274 <option value="uilist-text-tabular">List of UIDs (tabular)</option>
275 <option value="uilist-xml-xml">List of UIDs (xml)</option>
276 </param>
277 </when>
278 <when value="nlmcatalog">
279 <param name="output_format" type="select" label="Output Format">
280 <option value="docsum-xml-xml">Document summary (xml)</option>
281 <option value="none-xml-xml">Full (xml)</option>
282 <option value="none-text-txt">Full record (txt)</option>
283 <option value="uilist-text-tabular">List of UIDs (tabular)</option>
284 <option value="uilist-xml-xml">List of UIDs (xml)</option>
285 </param>
286 </when>
287 <when value="nuccore">
288 <param name="output_format" type="select" label="Output Format">
289 <option value="acc-text-tabular">Accession number(s) (tabular)</option>
290 <option value="fasta_cds_na-text-fasta">CDS nucleotide FASTA (fasta)</option>
291 <option value="fasta_cds_aa-text-fasta">CDS protein FASTA (fasta)</option>
292 <option value="docsum-xml-xml">Document summary (xml)</option>
293 <option value="fasta-text-fasta">FASTA (fasta)</option>
294 <option value="ft-text-txt">Feature table (txt)</option>
295 <option value="native-xml-xml">Full record (xml)</option>
296 <option value="gb-xml-xml">GBSeq (xml)</option>
297 <option value="gb-text-genbank">GenBank flat file (genbank)</option>
298 <option value="gbwithparts-text-genbank">GenBank flat file with full sequence (contigs) (genbank)</option>
299 <option value="gbc-xml-xml">INSDSeq (xml)</option>
300 <option value="uilist-text-tabular">List of UIDs (tabular)</option>
301 <option value="uilist-xml-xml">List of UIDs (xml)</option>
302 <option value="seqid-text-tabular">SeqID string (tabular)</option>
303 <option value="fasta-xml-xml">TinySeq (xml)</option>
304 <option value="none-asn.1-binary">binary ASN.1 (binary)</option>
305 <option value="none-text-txt">text ASN.1 (txt)</option>
306 </param>
307 </when>
308 <when value="pmc">
309 <param name="output_format" type="select" label="Output Format">
310 <option value="docsum-xml-xml">Document summary (xml)</option>
311 <option value="none-xml-xml">FULL (xml)</option>
312 <option value="uilist-text-tabular">List of UIDs (tabular)</option>
313 <option value="uilist-xml-xml">List of UIDs (xml)</option>
314 <option value="medline-text-txt">MEDLINE (txt)</option>
315 </param>
316 </when>
317 <when value="popset">
318 <param name="output_format" type="select" label="Output Format">
319 <option value="acc-text-tabular">Accession number(s) (tabular)</option>
320 <option value="docsum-xml-xml">Document summary (xml)</option>
321 <option value="fasta-text-fasta">FASTA (fasta)</option>
322 <option value="native-xml-xml">Full record (xml)</option>
323 <option value="gb-xml-xml">GBSeq (xml)</option>
324 <option value="gb-text-genbank">GenBank flat file (genbank)</option>
325 <option value="gbc-xml-xml">INSDSeq (xml)</option>
326 <option value="uilist-text-tabular">List of UIDs (tabular)</option>
327 <option value="uilist-xml-xml">List of UIDs (xml)</option>
328 <option value="seqid-text-tabular">SeqID string (tabular)</option>
329 <option value="fasta-xml-xml">TinySeq (xml)</option>
330 <option value="none-asn.1-binary">binary ASN.1 (binary)</option>
331 <option value="none-text-txt">text ASN.1 (txt)</option>
332 </param>
333 </when>
334 <when value="protein">
335 <param name="output_format" type="select" label="Output Format">
336 <option value="acc-text-tabular">Accession number(s) (tabular)</option>
337 <option value="docsum-xml-xml">Document summary (xml)</option>
338 <option value="fasta-text-fasta">FASTA (fasta)</option>
339 <option value="ft-text-txt">Feature table (txt)</option>
340 <option value="native-xml-xml">Full record (xml)</option>
341 <option value="gp-xml-xml">GBSeq (xml)</option>
342 <option value="gp-text-txt">GenPept flat file (txt)</option>
343 <option value="gpc-xml-xml">INSDSeq (xml)</option>
344 <option value="ipg-xml-xml">Identical Protein (xml)</option>
345 <option value="uilist-text-tabular">List of UIDs (tabular)</option>
346 <option value="uilist-xml-xml">List of UIDs (xml)</option>
347 <option value="seqid-text-tabular">SeqID string (tabular)</option>
348 <option value="fasta-xml-xml">TinySeq (xml)</option>
349 <option value="none-asn.1-binary">binary ASN.1 (binary)</option>
350 <option value="none-text-txt">text ASN.1 (txt)</option>
351 </param>
352 </when>
353 <when value="pubmed">
354 <param name="output_format" type="select" label="Output Format">
355 <option value="abstract-text-txt">Abstract (txt)</option>
356 <option value="docsum-xml-xml">Document summary (xml)</option>
357 <option value="none-xml-xml">Full (xml)</option>
358 <option value="uilist-text-tabular">List of UIDs (tabular)</option>
359 <option value="uilist-xml-xml">List of UIDs (xml)</option>
360 <option value="medline-text-txt">MEDLINE (txt)</option>
361 <option value="none-asn.1-txt">text ASN.1 (txt)</option>
362 </param>
363 </when>
364 <when value="snp">
365 <param name="output_format" type="select" label="Output Format">
366 <option value="chr-text-txt">Chromosome report (txt)</option>
367 <option value="docsum-json-json">Document summary (json)</option>
368 <option value="docsum-xml-xml">Document summary (xml)</option>
369 <option value="fasta-text-fasta">FASTA (fasta)</option>
370 <option value="flt-text-txt">Flat file (txt)</option>
371 <option value="uilist-json-json">List of UIDs (json)</option>
372 <option value="uilist-text-tabular">List of UIDs (tabular)</option>
373 <option value="uilist-xml-xml">List of UIDs (xml)</option>
374 <option value="rsr-text-txt">RS Cluster report (txt)</option>
375 <option value="ssexemplar-text-tabular">SS Exemplar list (tabular)</option>
376 <option value="docset-text-txt">Summary (txt)</option>
377 <option value="none-xml-xml">XML (xml)</option>
378 <option value="none-asn.1-txt">text ASN.1 (txt)</option>
379 </param>
380 </when>
381 <when value="sra">
382 <param name="output_format" type="select" label="Output Format">
383 <option value="docsum-xml-xml">Document summary (xml)</option>
384 <option value="full-xml-xml">Full (xml)</option>
385 <option value="uilist-text-tabular">List of UIDs (tabular)</option>
386 </param>
387 </when>
388 <when value="taxonomy">
389 <param name="output_format" type="select" label="Output Format">
390 <option value="docsum-xml-xml">Document summary (xml)</option>
391 <option value="none-xml-xml">Full (xml)</option>
392 <option value="uilist-text-tabular">List of UIDs (tabular)</option>
393 <option value="uilist-xml-xml">List of UIDs (xml)</option>
394 </param>
395 </when>
396 </conditional>
397 </xml>
398 <xml name="dbselect" token_name="db_select" token_label="NCBI Database to Query">
399 <param name="@NAME@" type="select" label="@LABEL@">
400 <option value="annotinfo">AnnotInfo (annotinfo)</option>
401 <option value="assembly">Assembly (assembly)</option>
402 <option value="bioproject">BioProject (bioproject)</option>
403 <option value="biosample">BioSample (biosample)</option>
404 <option value="biosystems">BioSystems (biosystems)</option>
405 <option value="biocollections">Biocollections (biocollections)</option>
406 <option value="blastdbinfo">BlastdbInfo (blastdbinfo)</option>
407 <option value="books">Books (books)</option>
408 <option value="clinvar">ClinVar (clinvar)</option>
409 <option value="cdd">Conserved Domains (cdd)</option>
410 <option value="gds">GEO DataSets (gds)</option>
411 <option value="geoprofiles">GEO Profiles (geoprofiles)</option>
412 <option value="gtr">GTR (gtr)</option>
413 <option value="gapplus">GaPPlus (gapplus)</option>
414 <option value="gene">Gene (gene)</option>
415 <option value="genome">Genome (genome)</option>
416 <option value="homologene">HomoloGene (homologene)</option>
417 <option value="ipg">Identical Protein Groups (ipg)</option>
418 <option value="mesh">MeSH (mesh)</option>
419 <option value="medgen">MedGen (medgen)</option>
420 <option value="ncbisearch">NCBI Web Site (ncbisearch)</option>
421 <option value="nlmcatalog">NLM Catalog (nlmcatalog)</option>
422 <option value="nuccore">Nucleotide (nuccore)</option>
423 <option value="nucleotide">Nucleotide (nucleotide)</option>
424 <option value="omim">OMIM (omim)</option>
425 <option value="orgtrack">Orgtrack (orgtrack)</option>
426 <option value="pmc">PMC (pmc)</option>
427 <option value="popset">PopSet (popset)</option>
428 <option value="protein">Protein (protein)</option>
429 <option value="proteinclusters">Protein Clusters (proteinclusters)</option>
430 <option value="pcassay">PubChem BioAssay (pcassay)</option>
431 <option value="pccompound">PubChem Compound (pccompound)</option>
432 <option value="pcsubstance">PubChem Substance (pcsubstance)</option>
433 <option value="pubmed">PubMed (pubmed)</option>
434 <option value="snp">SNP (snp)</option>
435 <option value="sra">SRA (sra)</option>
436 <option value="seqannot">SeqAnnot (seqannot)</option>
437 <option value="sparcle">Sparcle (sparcle)</option>
438 <option value="structure">Structure (structure)</option>
439 <option value="taxonomy">Taxonomy (taxonomy)</option>
440 <option value="gap">dbGaP (gap)</option>
441 <option value="dbvar">dbVar (dbvar)</option>
442 <option value="grasp">grasp (grasp)</option>
443 </param>
444 </xml>
445 <xml name="dbselect_linked" token_name="db_select_linked" token_label="NCBI Database to Use">
446 <param name="@NAME@" type="select" label="@LABEL@">
447 <option value="annotinfo">AnnotInfo (annotinfo)</option>
448 <option value="assembly">Assembly (assembly)</option>
449 <option value="bioproject">BioProject (bioproject)</option>
450 <option value="biosample">BioSample (biosample)</option>
451 <option value="biosystems">BioSystems (biosystems)</option>
452 <option value="biocollections">Biocollections (biocollections)</option>
453 <option value="blastdbinfo">BlastdbInfo (blastdbinfo)</option>
454 <option value="books">Books (books)</option>
455 <option value="clinvar">ClinVar (clinvar)</option>
456 <option value="cdd">Conserved Domains (cdd)</option>
457 <option value="gds">GEO DataSets (gds)</option>
458 <option value="geoprofiles">GEO Profiles (geoprofiles)</option>
459 <option value="gtr">GTR (gtr)</option>
460 <option value="gapplus">GaPPlus (gapplus)</option>
461 <option value="gene">Gene (gene)</option>
462 <option value="genome">Genome (genome)</option>
463 <option value="homologene">HomoloGene (homologene)</option>
464 <option value="ipg">Identical Protein Groups (ipg)</option>
465 <option value="mesh">MeSH (mesh)</option>
466 <option value="medgen">MedGen (medgen)</option>
467 <option value="ncbisearch">NCBI Web Site (ncbisearch)</option>
468 <option value="nlmcatalog">NLM Catalog (nlmcatalog)</option>
469 <option value="nuccore">Nucleotide (nuccore)</option>
470 <option value="nucleotide">Nucleotide (nucleotide)</option>
471 <option value="omim">OMIM (omim)</option>
472 <option value="orgtrack">Orgtrack (orgtrack)</option>
473 <option value="pmc">PMC (pmc)</option>
474 <option value="popset">PopSet (popset)</option>
475 <option value="protein">Protein (protein)</option>
476 <option value="proteinclusters">Protein Clusters (proteinclusters)</option>
477 <option value="pcassay">PubChem BioAssay (pcassay)</option>
478 <option value="pccompound">PubChem Compound (pccompound)</option>
479 <option value="pcsubstance">PubChem Substance (pcsubstance)</option>
480 <option value="pubmed">PubMed (pubmed)</option>
481 <option value="snp">SNP (snp)</option>
482 <option value="sra">SRA (sra)</option>
483 <option value="seqannot">SeqAnnot (seqannot)</option>
484 <option value="sparcle">Sparcle (sparcle)</option>
485 <option value="structure">Structure (structure)</option>
486 <option value="taxonomy">Taxonomy (taxonomy)</option>
487 <option value="gap">dbGaP (gap)</option>
488 <option value="dbvar">dbVar (dbvar)</option>
489 <option value="grasp">grasp (grasp)</option>
490 </param>
491 </xml>
492 <xml name="none_link_macro">
493 <conditional name="db_to">
494 <param name="db_select_to" type="select" label="To NCBI Database (n/a)">
495 <option value="n/a">Not applicable</option>
496 </param>
497 <when value="n/a">
498 <param name="linkname" type="select" label="Link Name (n/a)">
499 <option value="n/a">Not applicable</option>
500 </param>
501 </when>
502 </conditional>
503 </xml>
504 <xml name="db_link_macro">
505 <conditional name="db_from_link">
506 <expand macro="dbselect_linked" name="db_select_from_link" label="From NCBI Database" />
507 <when value="annotinfo">
508 <expand macro="none_link_macro" name="db_select_none" label="To NCBI Database" />
509 </when>
510 <when value="assembly">
511 <expand macro="none_link_macro" name="db_select_none" label="To NCBI Database" />
512 </when>
513 <when value="bioproject">
514 <expand macro="none_link_macro" name="db_select_none" label="To NCBI Database" />
515 </when>
516 <when value="biosample">
517 <expand macro="none_link_macro" name="db_select_none" label="To NCBI Database" />
518 </when>
519 <when value="biosystems">
520 <expand macro="none_link_macro" name="db_select_none" label="To NCBI Database" />
521 </when>
522 <when value="biocollections">
523 <expand macro="none_link_macro" name="db_select_none" label="To NCBI Database" />
524 </when>
525 <when value="blastdbinfo">
526 <expand macro="none_link_macro" name="db_select_none" label="To NCBI Database" />
527 </when>
528 <when value="books">
529 <expand macro="none_link_macro" name="db_select_none" label="To NCBI Database" />
530 </when>
531 <when value="clinvar">
532 <expand macro="none_link_macro" name="db_select_none" label="To NCBI Database" />
533 </when>
534 <when value="cdd">
535 <expand macro="none_link_macro" name="db_select_none" label="To NCBI Database" />
536 </when>
537 <when value="gds">
538 <expand macro="none_link_macro" name="db_select_none" label="To NCBI Database" />
539 </when>
540 <when value="geoprofiles">
541 <expand macro="none_link_macro" name="db_select_none" label="To NCBI Database" />
542 </when>
543 <when value="gtr">
544 <expand macro="none_link_macro" name="db_select_none" label="To NCBI Database" />
545 </when>
546 <when value="gapplus">
547 <expand macro="none_link_macro" name="db_select_none" label="To NCBI Database" />
548 </when>
549 <when value="gene">
550 <expand macro="none_link_macro" name="db_select_none" label="To NCBI Database" />
551 </when>
552 <when value="genome">
553 <expand macro="none_link_macro" name="db_select_none" label="To NCBI Database" />
554 </when>
555 <when value="homologene">
556 <expand macro="none_link_macro" name="db_select_none" label="To NCBI Database" />
557 </when>
558 <when value="ipg">
559 <expand macro="none_link_macro" name="db_select_none" label="To NCBI Database" />
560 </when>
561 <when value="mesh">
562 <expand macro="none_link_macro" name="db_select_none" label="To NCBI Database" />
563 </when>
564 <when value="medgen">
565 <expand macro="none_link_macro" name="db_select_none" label="To NCBI Database" />
566 </when>
567 <when value="ncbisearch">
568 <expand macro="none_link_macro" name="db_select_none" label="To NCBI Database" />
569 </when>
570 <when value="nlmcatalog">
571 <expand macro="none_link_macro" name="db_select_none" label="To NCBI Database" />
572 </when>
573 <when value="nuccore">
574 <expand macro="none_link_macro" name="db_select_none" label="To NCBI Database" />
575 </when>
576 <when value="nucleotide">
577 <expand macro="none_link_macro" name="db_select_none" label="To NCBI Database" />
578 </when>
579 <when value="omim">
580 <expand macro="none_link_macro" name="db_select_none" label="To NCBI Database" />
581 </when>
582 <when value="orgtrack">
583 <expand macro="none_link_macro" name="db_select_none" label="To NCBI Database" />
584 </when>
585 <when value="pmc">
586 <expand macro="none_link_macro" name="db_select_none" label="To NCBI Database" />
587 </when>
588 <when value="popset">
589 <expand macro="none_link_macro" name="db_select_none" label="To NCBI Database" />
590 </when>
591 <when value="protein">
592 <expand macro="none_link_macro" name="db_select_none" label="To NCBI Database" />
593 </when>
594 <when value="proteinclusters">
595 <expand macro="none_link_macro" name="db_select_none" label="To NCBI Database" />
596 </when>
597 <when value="pcassay">
598 <expand macro="none_link_macro" name="db_select_none" label="To NCBI Database" />
599 </when>
600 <when value="pccompound">
601 <expand macro="none_link_macro" name="db_select_none" label="To NCBI Database" />
602 </when>
603 <when value="pcsubstance">
604 <expand macro="none_link_macro" name="db_select_none" label="To NCBI Database" />
605 </when>
606 <when value="pubmed">
607 <expand macro="none_link_macro" name="db_select_none" label="To NCBI Database" />
608 </when>
609 <when value="snp">
610 <expand macro="none_link_macro" name="db_select_none" label="To NCBI Database" />
611 </when>
612 <when value="sra">
613 <expand macro="none_link_macro" name="db_select_none" label="To NCBI Database" />
614 </when>
615 <when value="seqannot">
616 <expand macro="none_link_macro" name="db_select_none" label="To NCBI Database" />
617 </when>
618 <when value="sparcle">
619 <expand macro="none_link_macro" name="db_select_none" label="To NCBI Database" />
620 </when>
621 <when value="structure">
622 <expand macro="none_link_macro" name="db_select_none" label="To NCBI Database" />
623 </when>
624 <when value="taxonomy">
625 <expand macro="none_link_macro" name="db_select_none" label="To NCBI Database" />
626 </when>
627 <when value="gap">
628 <expand macro="none_link_macro" name="db_select_none" label="To NCBI Database" />
629 </when>
630 <when value="dbvar">
631 <expand macro="none_link_macro" name="db_select_none" label="To NCBI Database" />
632 </when>
633 <when value="grasp">
634 <expand macro="none_link_macro" name="db_select_none" label="To NCBI Database" />
635 </when>
636 </conditional>
637 </xml>
638 <xml name="linkmacro">
639 <conditional name="cmd">
640 <param name="cmd_select" type="select" label="Link Method" help="Fetch UIDs from the 'To' Database that are linked to supplied UIDs in the 'From' database">
641 <option value="neighbor" selected="true">Neighbor (neighbor)</option>
642 <option value="neighbor_history">Neighbor, save result in history server (neighbor_history)</option>
643 <option value="neighbor_score">Neighbor Score (neighbor_score)</option>
644 <option value="acheck">Show available links to any database (acheck)</option>
645 <option value="ncheck">Show available links within the same database (ncheck)</option>
646 <option value="lcheck">Show available links to external sources (LinkOuts) (lcheck)</option>
647 <option value="llinks">Show available URLs and attributes for non-library LinkOut providers (llinks)</option>
648 <option value="llinkslib">Show available URLs and attributes for all LinkOut Providers (llinkslib)</option>
649 <option value="prlinks">Show available primary LinkOut Provider Links (prlinks)</option>
650 </param>
651 <when value="neighbor">
652 <expand macro="db_db_link_macro" name="link_select" label="Link name" />
653 <param name="output_format" type="select" label="Output Format">
654 <option value="xml">ID File (xml)</option>
655 <option value="json">ID File (json)</option>
656 <option value="text" selected="true">ID File (tabular)</option>
657 </param>
658 </when>
659 <when value="neighbor_history">
660 <expand macro="db_db_link_macro" name="link_select" label="Link name" />
661 <param name="output_format" type="select" label="Output Format">
662 <option value="json">History File (json)</option>
663 <option value="xml" selected="true">History File (xml)</option>
664 </param>
665 </when>
666 <when value="neighbor_score">
667 <expand macro="db_db_link_macro" name="link_select" label="Link name" />
668 <param name="output_format" type="select" label="Output Format">
669 <option value="xml">ID File (xml)</option>
670 <option value="json">ID File (json)</option>
671 <option value="text" selected="true">ID File (tabular)</option>
672 </param>
673 </when>
674 <when value="acheck">
675 <expand macro="db_link_macro" name="db_select_from_link" label="From NCBI Database" />
676 <param name="output_format" type="select" label="Output Format">
677 <option value="xml" selected="True">Link Description File (xml)</option>
678 <option value="json">Link Description File (json)</option>
679 </param>
680 </when>
681 <when value="ncheck">
682 <expand macro="db_link_macro" name="db_select_from_link" label="From NCBI Database" />
683 <param name="output_format" type="select" label="Output Format">
684 <option value="xml" selected="True">Link Description File (xml)</option>
685 <option value="json">Link Description File (json)</option>
686 </param>
687 </when>
688 <when value="lcheck">
689 <expand macro="db_link_macro" name="db_select_from_link" label="From NCBI Database" />
690 <param name="output_format" type="select" label="Output Format">
691 <option value="xml" selected="True">Link Description File (xml)</option>
692 <option value="json">Link Description File (json)</option>
693 </param>
694 </when>
695 <when value="llinks">
696 <expand macro="db_link_macro" name="db_select_from_link" label="From NCBI Database" />
697 <param name="output_format" type="select" label="Output Format">
698 <option value="xml" selected="True">Link Description File (xml)</option>
699 <option value="json">Link Description File (json)</option>
700 </param>
701 </when>
702 <when value="llinkslib">
703 <expand macro="db_link_macro" name="db_select_from_link" label="From NCBI Database" />
704 <param name="output_format" type="select" label="Output Format">
705 <option value="xml" selected="true">Link Description File (xml)</option>
706 <option value="json">Link Description File (json)</option>
707 </param>
708 </when>
709 <when value="prlinks">
710 <expand macro="db_link_macro" name="db_select_from_link" label="From NCBI Database" />
711 <param name="output_format" type="select" label="Output Format">
712 <option value="xml" selected="true">Link Description File (xml)</option>
713 <option value="json">Link Description File (json)</option>
714 </param>
715 </when>
716 </conditional>
717 </xml>
718 <xml name="db_db_link_macro">
719 <conditional name="db_from_link">
720 <expand macro="dbselect_linked" name="db_select_from_link" label="From NCBI Database" />
721 <when value="annotinfo">
722 <conditional name="db_to">
723 <param name="db_select_to" type="select" label="To NCBI Database">
724 <option value="annotinfo">AnnotInfo (annotinfo)</option>
725 </param>
726 <when value="annotinfo">
727 <param name="linkname" type="select" label="Link Name">
728 <option value="none">All Links</option>
729 </param>
730 </when>
731 </conditional>
732 </when>
733 <when value="assembly">
734 <conditional name="db_to">
735 <param name="db_select_to" type="select" label="To NCBI Database">
736 <option value="assembly">Assembly (assembly)</option>
737 <option value="bioproject">BioProject (bioproject)</option>
738 <option value="biosample">BioSample (biosample)</option>
739 <option value="genome">Genome (genome)</option>
740 <option value="nuccore">Nucleotide (nuccore)</option>
741 <option value="pubmed">PubMed (pubmed)</option>
742 <option value="sra">SRA (sra)</option>
743 <option value="taxonomy">Taxonomy (taxonomy)</option>
744 </param>
745 <when value="assembly">
746 <param name="linkname" type="select" label="Link Name">
747 <option value="None">All Links</option>
748 <option value="assembly_assembly_diploid">Linked assembly from diploid (assembly_assembly_diploid)</option>
749 </param>
750 </when>
751 <when value="bioproject">
752 <param name="linkname" type="select" label="Link Name">
753 <option value="None">All Links</option>
754 <option value="assembly_bioproject">BioProject (assembly_bioproject)</option>
755 </param>
756 </when>
757 <when value="biosample">
758 <param name="linkname" type="select" label="Link Name">
759 <option value="None">All Links</option>
760 <option value="assembly_biosample">BioSample (assembly_biosample)</option>
761 </param>
762 </when>
763 <when value="genome">
764 <param name="linkname" type="select" label="Link Name">
765 <option value="None">All Links</option>
766 <option value="assembly_genome">Genome (assembly_genome)</option>
767 </param>
768 </when>
769 <when value="nuccore">
770 <param name="linkname" type="select" label="Link Name">
771 <option value="None">All Links</option>
772 <option value="assembly_nuccore_insdc">Nucleotide INSDC (assembly_nuccore_insdc)</option>
773 <option value="assembly_nuccore_refseq">Nucleotide RefSeq (assembly_nuccore_refseq)</option>
774 <option value="assembly_nuccore_wgsmaster">WGS Master (assembly_nuccore_wgsmaster)</option>
775 </param>
776 </when>
777 <when value="pubmed">
778 <param name="linkname" type="select" label="Link Name">
779 <option value="None">All Links</option>
780 <option value="assembly_pubmed">PubMed (assembly_pubmed)</option>
781 </param>
782 </when>
783 <when value="sra">
784 <param name="linkname" type="select" label="Link Name">
785 <option value="None">All Links</option>
786 <option value="assembly_sra">Sra Links (assembly_sra)</option>
787 </param>
788 </when>
789 <when value="taxonomy">
790 <param name="linkname" type="select" label="Link Name">
791 <option value="None">All Links</option>
792 <option value="assembly_taxonomy">Taxonomy (assembly_taxonomy)</option>
793 </param>
794 </when>
795 </conditional>
796 </when>
797 <when value="bioproject">
798 <conditional name="db_to">
799 <param name="db_select_to" type="select" label="To NCBI Database">
800 <option value="assembly">Assembly (assembly)</option>
801 <option value="bioproject">BioProject (bioproject)</option>
802 <option value="biosample">BioSample (biosample)</option>
803 <option value="gds">GEO DataSets (gds)</option>
804 <option value="gene">Gene (gene)</option>
805 <option value="genome">Genome (genome)</option>
806 <option value="nuccore">Nucleotide (nuccore)</option>
807 <option value="pmc">PMC (pmc)</option>
808 <option value="popset">PopSet (popset)</option>
809 <option value="protein">Protein (protein)</option>
810 <option value="pubmed">PubMed (pubmed)</option>
811 <option value="snp">SNP (snp)</option>
812 <option value="sra">SRA (sra)</option>
813 <option value="taxonomy">Taxonomy (taxonomy)</option>
814 <option value="gap">dbGaP (gap)</option>
815 <option value="dbvar">dbVar (dbvar)</option>
816 </param>
817 <when value="assembly">
818 <param name="linkname" type="select" label="Link Name">
819 <option value="None">All Links</option>
820 <option value="bioproject_assembly_all">Assembly Links (bioproject_assembly_all)</option>
821 </param>
822 </when>
823 <when value="bioproject">
824 <param name="linkname" type="select" label="Link Name">
825 <option value="None">All Links</option>
826 <option value="bioproject_bioproject">BioProject (bioproject_bioproject)</option>
827 <option value="bioproject_bioproject_u2d">Data projects (bioproject_bioproject_u2d)</option>
828 <option value="bioproject_bioproject_d2u">Umbrella projects (bioproject_bioproject_d2u)</option>
829 </param>
830 </when>
831 <when value="biosample">
832 <param name="linkname" type="select" label="Link Name">
833 <option value="None">All Links</option>
834 <option value="bioproject_biosample_all">BioSample Links (bioproject_biosample_all)</option>
835 </param>
836 </when>
837 <when value="gds">
838 <param name="linkname" type="select" label="Link Name">
839 <option value="None">All Links</option>
840 <option value="bioproject_gds">GEO DataSet Links (bioproject_gds)</option>
841 </param>
842 </when>
843 <when value="gene">
844 <param name="linkname" type="select" label="Link Name">
845 <option value="None">All Links</option>
846 <option value="bioproject_gene">Related Genes (bioproject_gene)</option>
847 </param>
848 </when>
849 <when value="genome">
850 <param name="linkname" type="select" label="Link Name">
851 <option value="None">All Links</option>
852 <option value="bioproject_genome">Genome Links (bioproject_genome)</option>
853 </param>
854 </when>
855 <when value="nuccore">
856 <param name="linkname" type="select" label="Link Name">
857 <option value="None">All Links</option>
858 <option value="bioproject_nuccore_genomic_dna">Genomic DNA (bioproject_nuccore_genomic_dna)</option>
859 <option value="bioproject_nuccore_genomic_rna">Genomic RNA (bioproject_nuccore_genomic_rna)</option>
860 <option value="bioproject_nuccore_map">Map Records (bioproject_nuccore_map)</option>
861 <option value="bioproject_nuccore">Nucleotide Links (bioproject_nuccore)</option>
862 <option value="bioproject_nuccore_reference">Reference Genome Sequences Links (bioproject_nuccore_reference)</option>
863 <option value="bioproject_nuccore_repr">Representative Genome Sequences Links (bioproject_nuccore_repr)</option>
864 <option value="bioproject_nuccore_tsamaster">TSA master (bioproject_nuccore_tsamaster)</option>
865 <option value="bioproject_nuccore_transcript">Transcript (bioproject_nuccore_transcript)</option>
866 <option value="bioproject_nuccore_wgsmaster">WGS master (bioproject_nuccore_wgsmaster)</option>
867 </param>
868 </when>
869 <when value="pmc">
870 <param name="linkname" type="select" label="Link Name">
871 <option value="None">All Links</option>
872 <option value="bioproject_pmc">PMC Links (bioproject_pmc)</option>
873 </param>
874 </when>
875 <when value="popset">
876 <param name="linkname" type="select" label="Link Name">
877 <option value="None">All Links</option>
878 <option value="bioproject_popset">PopSet Links (bioproject_popset)</option>
879 </param>
880 </when>
881 <when value="protein">
882 <param name="linkname" type="select" label="Link Name">
883 <option value="None">All Links</option>
884 <option value="bioproject_protein">Protein Links (bioproject_protein)</option>
885 </param>
886 </when>
887 <when value="pubmed">
888 <param name="linkname" type="select" label="Link Name">
889 <option value="None">All Links</option>
890 <option value="bioproject_pubmed">PubMed Links (bioproject_pubmed)</option>
891 </param>
892 </when>
893 <when value="snp">
894 <param name="linkname" type="select" label="Link Name">
895 <option value="None">All Links</option>
896 <option value="bioproject_snp">SNP Links (bioproject_snp)</option>
897 </param>
898 </when>
899 <when value="sra">
900 <param name="linkname" type="select" label="Link Name">
901 <option value="None">All Links</option>
902 <option value="bioproject_sra_all">SRA Links (bioproject_sra_all)</option>
903 </param>
904 </when>
905 <when value="taxonomy">
906 <param name="linkname" type="select" label="Link Name">
907 <option value="None">All Links</option>
908 <option value="bioproject_taxonomy">Taxonomy Links (bioproject_taxonomy)</option>
909 </param>
910 </when>
911 <when value="gap">
912 <param name="linkname" type="select" label="Link Name">
913 <option value="None">All Links</option>
914 <option value="bioproject_gap">dbGaP Links (bioproject_gap)</option>
915 </param>
916 </when>
917 <when value="dbvar">
918 <param name="linkname" type="select" label="Link Name">
919 <option value="None">All Links</option>
920 <option value="bioproject_dbvar">dbVar (bioproject_dbvar)</option>
921 </param>
922 </when>
923 </conditional>
924 </when>
925 <when value="biosample">
926 <conditional name="db_to">
927 <param name="db_select_to" type="select" label="To NCBI Database">
928 <option value="assembly">Assembly (assembly)</option>
929 <option value="bioproject">BioProject (bioproject)</option>
930 <option value="biocollections">Biocollections (biocollections)</option>
931 <option value="gds">GEO DataSets (gds)</option>
932 <option value="nuccore">Nucleotide (nuccore)</option>
933 <option value="omim">OMIM (omim)</option>
934 <option value="pubmed">PubMed (pubmed)</option>
935 <option value="snp">SNP (snp)</option>
936 <option value="sra">SRA (sra)</option>
937 <option value="taxonomy">Taxonomy (taxonomy)</option>
938 <option value="gap">dbGaP (gap)</option>
939 <option value="dbvar">dbVar (dbvar)</option>
940 </param>
941 <when value="assembly">
942 <param name="linkname" type="select" label="Link Name">
943 <option value="None">All Links</option>
944 <option value="biosample_assembly">Assembly links (biosample_assembly)</option>
945 </param>
946 </when>
947 <when value="bioproject">
948 <param name="linkname" type="select" label="Link Name">
949 <option value="None">All Links</option>
950 <option value="biosample_bioproject">BioProject Links (biosample_bioproject)</option>
951 </param>
952 </when>
953 <when value="biocollections">
954 <param name="linkname" type="select" label="Link Name">
955 <option value="None">All Links</option>
956 <option value="biosample_biocollections">BioCollections (biosample_biocollections)</option>
957 </param>
958 </when>
959 <when value="gds">
960 <param name="linkname" type="select" label="Link Name">
961 <option value="None">All Links</option>
962 <option value="biosample_gds">GEO DataSets Links (biosample_gds)</option>
963 </param>
964 </when>
965 <when value="nuccore">
966 <param name="linkname" type="select" label="Link Name">
967 <option value="None">All Links</option>
968 <option value="biosample_nuccore">Nucleotide Links (biosample_nuccore)</option>
969 </param>
970 </when>
971 <when value="omim">
972 <param name="linkname" type="select" label="Link Name">
973 <option value="None">All Links</option>
974 <option value="biosample_omim">OMIM links (biosample_omim)</option>
975 </param>
976 </when>
977 <when value="pubmed">
978 <param name="linkname" type="select" label="Link Name">
979 <option value="None">All Links</option>
980 <option value="biosample_pubmed">PubMed Links (biosample_pubmed)</option>
981 </param>
982 </when>
983 <when value="snp">
984 <param name="linkname" type="select" label="Link Name">
985 <option value="None">All Links</option>
986 <option value="biosample_snp">SNP Links (biosample_snp)</option>
987 </param>
988 </when>
989 <when value="sra">
990 <param name="linkname" type="select" label="Link Name">
991 <option value="None">All Links</option>
992 <option value="biosample_sra">SRA Links (biosample_sra)</option>
993 </param>
994 </when>
995 <when value="taxonomy">
996 <param name="linkname" type="select" label="Link Name">
997 <option value="None">All Links</option>
998 <option value="biosample_taxonomy">Taxonomy Links (biosample_taxonomy)</option>
999 </param>
1000 </when>
1001 <when value="gap">
1002 <param name="linkname" type="select" label="Link Name">
1003 <option value="None">All Links</option>
1004 <option value="biosample_gap">dbGaP Links (biosample_gap)</option>
1005 </param>
1006 </when>
1007 <when value="dbvar">
1008 <param name="linkname" type="select" label="Link Name">
1009 <option value="None">All Links</option>
1010 <option value="biosample_dbvar">dbVar Links (biosample_dbvar)</option>
1011 </param>
1012 </when>
1013 </conditional>
1014 </when>
1015 <when value="biosystems">
1016 <conditional name="db_to">
1017 <param name="db_select_to" type="select" label="To NCBI Database">
1018 <option value="biosystems">BioSystems (biosystems)</option>
1019 <option value="cdd">Conserved Domains (cdd)</option>
1020 <option value="geoprofiles">GEO Profiles (geoprofiles)</option>
1021 <option value="gene">Gene (gene)</option>
1022 <option value="homologene">HomoloGene (homologene)</option>
1023 <option value="medgen">MedGen (medgen)</option>
1024 <option value="nuccore">Nucleotide (nuccore)</option>
1025 <option value="omim">OMIM (omim)</option>
1026 <option value="pmc">PMC (pmc)</option>
1027 <option value="protein">Protein (protein)</option>
1028 <option value="proteinclusters">Protein Clusters (proteinclusters)</option>
1029 <option value="pccompound">PubChem Compound (pccompound)</option>
1030 <option value="pcsubstance">PubChem Substance (pcsubstance)</option>
1031 <option value="pubmed">PubMed (pubmed)</option>
1032 <option value="sparcle">Sparcle (sparcle)</option>
1033 <option value="structure">Structure (structure)</option>
1034 <option value="taxonomy">Taxonomy (taxonomy)</option>
1035 <option value="dbvar">dbVar (dbvar)</option>
1036 </param>
1037 <when value="biosystems">
1038 <param name="linkname" type="select" label="Link Name">
1039 <option value="None">All Links</option>
1040 <option value="biosystems_biosystems_conserved">Conserved BioSystems (biosystems_biosystems_conserved)</option>
1041 <option value="biosystems_biosystems_linked">Linked BioSystems (biosystems_biosystems_linked)</option>
1042 <option value="biosystems_biosystems_specific">Organism Specific BioSystems (biosystems_biosystems_specific)</option>
1043 <option value="biosystems_biosystems_similar">Similar BioSystems (biosystems_biosystems_similar)</option>
1044 <option value="biosystems_biosystems_sub">Subset BioSystems (biosystems_biosystems_sub)</option>
1045 <option value="biosystems_biosystems_super">Superset BioSystems (biosystems_biosystems_super)</option>
1046 </param>
1047 </when>
1048 <when value="cdd">
1049 <param name="linkname" type="select" label="Link Name">
1050 <option value="None">All Links</option>
1051 <option value="biosystems_cdd_specific">Conserved Domains (biosystems_cdd_specific)</option>
1052 </param>
1053 </when>
1054 <when value="geoprofiles">
1055 <param name="linkname" type="select" label="Link Name">
1056 <option value="None">All Links</option>
1057 <option value="biosystems_geoprofiles_gene">Gene Expression (biosystems_geoprofiles_gene)</option>
1058 </param>
1059 </when>
1060 <when value="gene">
1061 <param name="linkname" type="select" label="Link Name">
1062 <option value="None">All Links</option>
1063 <option value="biosystems_gene_all">Gene (all) (biosystems_gene_all)</option>
1064 </param>
1065 </when>
1066 <when value="homologene">
1067 <param name="linkname" type="select" label="Link Name">
1068 <option value="None">All Links</option>
1069 <option value="biosystems_homologene">Homologene (biosystems_homologene)</option>
1070 </param>
1071 </when>
1072 <when value="medgen">
1073 <param name="linkname" type="select" label="Link Name">
1074 <option value="None">All Links</option>
1075 <option value="biosystems_medgen_gene_diseases">Medical genetics (biosystems_medgen_gene_diseases)</option>
1076 </param>
1077 </when>
1078 <when value="nuccore">
1079 <param name="linkname" type="select" label="Link Name">
1080 <option value="None">All Links</option>
1081 <option value="biosystems_nuccore">Nucleotides (biosystems_nuccore)</option>
1082 </param>
1083 </when>
1084 <when value="omim">
1085 <param name="linkname" type="select" label="Link Name">
1086 <option value="None">All Links</option>
1087 <option value="biosystems_omim">OMIM (biosystems_omim)</option>
1088 </param>
1089 </when>
1090 <when value="pmc">
1091 <param name="linkname" type="select" label="Link Name">
1092 <option value="None">All Links</option>
1093 <option value="biosystems_pmc_pubmed">Full text in PMC (biosystems_pmc_pubmed)</option>
1094 </param>
1095 </when>
1096 <when value="protein">
1097 <param name="linkname" type="select" label="Link Name">
1098 <option value="None">All Links</option>
1099 <option value="biosystems_protein">Proteins (biosystems_protein)</option>
1100 </param>
1101 </when>
1102 <when value="proteinclusters">
1103 <param name="linkname" type="select" label="Link Name">
1104 <option value="None">All Links</option>
1105 <option value="biosystems_proteinclusters">Protein Clusters (biosystems_proteinclusters)</option>
1106 </param>
1107 </when>
1108 <when value="pccompound">
1109 <param name="linkname" type="select" label="Link Name">
1110 <option value="None">All Links</option>
1111 <option value="biosystems_pccompound">PubChem Compounds (biosystems_pccompound)</option>
1112 </param>
1113 </when>
1114 <when value="pcsubstance">
1115 <param name="linkname" type="select" label="Link Name">
1116 <option value="None">All Links</option>
1117 <option value="biosystems_pcsubstance">PubChem Substances (biosystems_pcsubstance)</option>
1118 </param>
1119 </when>
1120 <when value="pubmed">
1121 <param name="linkname" type="select" label="Link Name">
1122 <option value="None">All Links</option>
1123 <option value="biosystems_pubmed">PubMed (biosystems_pubmed)</option>
1124 </param>
1125 </when>
1126 <when value="sparcle">
1127 <param name="linkname" type="select" label="Link Name">
1128 <option value="None">All Links</option>
1129 <option value="biosystems_sparcle">Functional Class (biosystems_sparcle)</option>
1130 </param>
1131 </when>
1132 <when value="structure">
1133 <param name="linkname" type="select" label="Link Name">
1134 <option value="None">All Links</option>
1135 <option value="biosystems_structure">Structures (biosystems_structure)</option>
1136 </param>
1137 </when>
1138 <when value="taxonomy">
1139 <param name="linkname" type="select" label="Link Name">
1140 <option value="None">All Links</option>
1141 <option value="biosystems_taxonomy">Taxonomy (biosystems_taxonomy)</option>
1142 </param>
1143 </when>
1144 <when value="dbvar">
1145 <param name="linkname" type="select" label="Link Name">
1146 <option value="None">All Links</option>
1147 <option value="biosystems_dbvar_gene">dbVar (biosystems_dbvar_gene)</option>
1148 </param>
1149 </when>
1150 </conditional>
1151 </when>
1152 <when value="biocollections">
1153 <conditional name="db_to">
1154 <param name="db_select_to" type="select" label="To NCBI Database">
1155 <option value="biosample">BioSample (biosample)</option>
1156 <option value="nuccore">Nucleotide (nuccore)</option>
1157 <option value="popset">PopSet (popset)</option>
1158 <option value="protein">Protein (protein)</option>
1159 </param>
1160 <when value="biosample">
1161 <param name="linkname" type="select" label="Link Name">
1162 <option value="None">All Links</option>
1163 <option value="biocollections_biosample">BioSample (biocollections_biosample)</option>
1164 </param>
1165 </when>
1166 <when value="nuccore">
1167 <param name="linkname" type="select" label="Link Name">
1168 <option value="None">All Links</option>
1169 <option value="biocollections_nuccore">Nucleotide (biocollections_nuccore)</option>
1170 </param>
1171 </when>
1172 <when value="popset">
1173 <param name="linkname" type="select" label="Link Name">
1174 <option value="None">All Links</option>
1175 <option value="biocollections_popset">PopSet (biocollections_popset)</option>
1176 </param>
1177 </when>
1178 <when value="protein">
1179 <param name="linkname" type="select" label="Link Name">
1180 <option value="None">All Links</option>
1181 <option value="biocollections_protein">Protein (biocollections_protein)</option>
1182 </param>
1183 </when>
1184 </conditional>
1185 </when>
1186 <when value="blastdbinfo">
1187 <conditional name="db_to">
1188 <param name="db_select_to" type="select" label="To NCBI Database">
1189 <option value="bioproject">BioProject (bioproject)</option>
1190 <option value="pubmed">PubMed (pubmed)</option>
1191 <option value="taxonomy">Taxonomy (taxonomy)</option>
1192 </param>
1193 <when value="bioproject">
1194 <param name="linkname" type="select" label="Link Name">
1195 <option value="None">All Links</option>
1196 <option value="blastdbinfo_bioproject">BioProject Links (blastdbinfo_bioproject)</option>
1197 </param>
1198 </when>
1199 <when value="pubmed">
1200 <param name="linkname" type="select" label="Link Name">
1201 <option value="None">All Links</option>
1202 <option value="blastdbinfo_pubmed">Pubmed Links (blastdbinfo_pubmed)</option>
1203 </param>
1204 </when>
1205 <when value="taxonomy">
1206 <param name="linkname" type="select" label="Link Name">
1207 <option value="None">All Links</option>
1208 <option value="blastdbinfo_taxonomy">Taxonomy Links (blastdbinfo_taxonomy)</option>
1209 </param>
1210 </when>
1211 </conditional>
1212 </when>
1213 <when value="books">
1214 <conditional name="db_to">
1215 <param name="db_select_to" type="select" label="To NCBI Database">
1216 <option value="gene">Gene (gene)</option>
1217 <option value="medgen">MedGen (medgen)</option>
1218 <option value="nlmcatalog">NLM Catalog (nlmcatalog)</option>
1219 <option value="omim">OMIM (omim)</option>
1220 <option value="pmc">PMC (pmc)</option>
1221 <option value="pcassay">PubChem BioAssay (pcassay)</option>
1222 <option value="pcsubstance">PubChem Substance (pcsubstance)</option>
1223 <option value="pubmed">PubMed (pubmed)</option>
1224 <option value="taxonomy">Taxonomy (taxonomy)</option>
1225 </param>
1226 <when value="gene">
1227 <param name="linkname" type="select" label="Link Name">
1228 <option value="None">All Links</option>
1229 <option value="books_gene">Gene Links (books_gene)</option>
1230 </param>
1231 </when>
1232 <when value="medgen">
1233 <param name="linkname" type="select" label="Link Name">
1234 <option value="None">All Links</option>
1235 <option value="books_medgen">MedGen (books_medgen)</option>
1236 </param>
1237 </when>
1238 <when value="nlmcatalog">
1239 <param name="linkname" type="select" label="Link Name">
1240 <option value="None">All Links</option>
1241 <option value="books_nlmcatalog">NLM Catalog Links (books_nlmcatalog)</option>
1242 </param>
1243 </when>
1244 <when value="omim">
1245 <param name="linkname" type="select" label="Link Name">
1246 <option value="None">All Links</option>
1247 <option value="books_omim">OMIM Links (books_omim)</option>
1248 </param>
1249 </when>
1250 <when value="pmc">
1251 <param name="linkname" type="select" label="Link Name">
1252 <option value="None">All Links</option>
1253 <option value="books_pmc_refs">PMC Links (books_pmc_refs)</option>
1254 </param>
1255 </when>
1256 <when value="pcassay">
1257 <param name="linkname" type="select" label="Link Name">
1258 <option value="None">All Links</option>
1259 <option value="books_pcassay_probe">PubChem BioAssay for Chemical Probe (books_pcassay_probe)</option>
1260 </param>
1261 </when>
1262 <when value="pcsubstance">
1263 <param name="linkname" type="select" label="Link Name">
1264 <option value="None">All Links</option>
1265 <option value="books_pcsubstance">PubChem Substance (books_pcsubstance)</option>
1266 </param>
1267 </when>
1268 <when value="pubmed">
1269 <param name="linkname" type="select" label="Link Name">
1270 <option value="None">All Links</option>
1271 <option value="books_pubmed_refs">PubMed Links (books_pubmed_refs)</option>
1272 </param>
1273 </when>
1274 <when value="taxonomy">
1275 <param name="linkname" type="select" label="Link Name">
1276 <option value="None">All Links</option>
1277 <option value="books_taxonomy">Taxonomy Links (books_taxonomy)</option>
1278 </param>
1279 </when>
1280 </conditional>
1281 </when>
1282 <when value="clinvar">
1283 <conditional name="db_to">
1284 <param name="db_select_to" type="select" label="To NCBI Database">
1285 <option value="gtr">GTR (gtr)</option>
1286 <option value="gene">Gene (gene)</option>
1287 <option value="medgen">MedGen (medgen)</option>
1288 <option value="omim">OMIM (omim)</option>
1289 <option value="orgtrack">Orgtrack (orgtrack)</option>
1290 <option value="pmc">PMC (pmc)</option>
1291 <option value="pubmed">PubMed (pubmed)</option>
1292 <option value="snp">SNP (snp)</option>
1293 <option value="sparcle">Sparcle (sparcle)</option>
1294 <option value="dbvar">dbVar (dbvar)</option>
1295 </param>
1296 <when value="gtr">
1297 <param name="linkname" type="select" label="Link Name">
1298 <option value="None">All Links</option>
1299 <option value="clinvar_gtr">GTR (all) (clinvar_gtr)</option>
1300 </param>
1301 </when>
1302 <when value="gene">
1303 <param name="linkname" type="select" label="Link Name">
1304 <option value="None">All Links</option>
1305 <option value="clinvar_gene">Gene (clinvar_gene)</option>
1306 <option value="clinvar_gene_specific">Related genes (specific) (clinvar_gene_specific)</option>
1307 </param>
1308 </when>
1309 <when value="medgen">
1310 <param name="linkname" type="select" label="Link Name">
1311 <option value="None">All Links</option>
1312 <option value="clinvar_medgen">MedGen (clinvar_medgen)</option>
1313 </param>
1314 </when>
1315 <when value="omim">
1316 <param name="linkname" type="select" label="Link Name">
1317 <option value="None">All Links</option>
1318 <option value="clinvar_omim">OMIM (clinvar_omim)</option>
1319 </param>
1320 </when>
1321 <when value="orgtrack">
1322 <param name="linkname" type="select" label="Link Name">
1323 <option value="None">All Links</option>
1324 <option value="clinvar_orgtrack">Orgtrack (all) (clinvar_orgtrack)</option>
1325 </param>
1326 </when>
1327 <when value="pmc">
1328 <param name="linkname" type="select" label="Link Name">
1329 <option value="None">All Links</option>
1330 <option value="clinvar_pmc">PMC (clinvar_pmc)</option>
1331 </param>
1332 </when>
1333 <when value="pubmed">
1334 <param name="linkname" type="select" label="Link Name">
1335 <option value="None">All Links</option>
1336 <option value="clinvar_pubmed_calculated">PubMed (calculated) (clinvar_pubmed_calculated)</option>
1337 <option value="clinvar_pubmed">PubMed (clinvar_pubmed)</option>
1338 </param>
1339 </when>
1340 <when value="snp">
1341 <param name="linkname" type="select" label="Link Name">
1342 <option value="None">All Links</option>
1343 <option value="clinvar_snp">dbSNP (clinvar_snp)</option>
1344 </param>
1345 </when>
1346 <when value="sparcle">
1347 <param name="linkname" type="select" label="Link Name">
1348 <option value="None">All Links</option>
1349 <option value="clinvar_sparcle">Functional Class (clinvar_sparcle)</option>
1350 </param>
1351 </when>
1352 <when value="dbvar">
1353 <param name="linkname" type="select" label="Link Name">
1354 <option value="None">All Links</option>
1355 <option value="clinvar_dbvar">dbVar (clinvar_dbvar)</option>
1356 </param>
1357 </when>
1358 </conditional>
1359 </when>
1360 <when value="cdd">
1361 <conditional name="db_to">
1362 <param name="db_select_to" type="select" label="To NCBI Database">
1363 <option value="biosystems">BioSystems (biosystems)</option>
1364 <option value="cdd">Conserved Domains (cdd)</option>
1365 <option value="gene">Gene (gene)</option>
1366 <option value="homologene">HomoloGene (homologene)</option>
1367 <option value="pmc">PMC (pmc)</option>
1368 <option value="protein">Protein (protein)</option>
1369 <option value="pcassay">PubChem BioAssay (pcassay)</option>
1370 <option value="pubmed">PubMed (pubmed)</option>
1371 <option value="sparcle">Sparcle (sparcle)</option>
1372 <option value="structure">Structure (structure)</option>
1373 <option value="taxonomy">Taxonomy (taxonomy)</option>
1374 </param>
1375 <when value="biosystems">
1376 <param name="linkname" type="select" label="Link Name">
1377 <option value="None">All Links</option>
1378 <option value="cdd_biosystems_specific">BioSystems (cdd_biosystems_specific)</option>
1379 </param>
1380 </when>
1381 <when value="cdd">
1382 <param name="linkname" type="select" label="Link Name">
1383 <option value="None">All Links</option>
1384 <option value="cdd_cdd_superfamily_2">Superfamily Links (cdd_cdd_superfamily_2)</option>
1385 <option value="cdd_cdd_related">Superfamily Member Links (cdd_cdd_related)</option>
1386 </param>
1387 </when>
1388 <when value="gene">
1389 <param name="linkname" type="select" label="Link Name">
1390 <option value="None">All Links</option>
1391 <option value="cdd_gene">Gene Links (cdd_gene)</option>
1392 </param>
1393 </when>
1394 <when value="homologene">
1395 <param name="linkname" type="select" label="Link Name">
1396 <option value="None">All Links</option>
1397 <option value="cdd_homologene">HomoloGene Links (cdd_homologene)</option>
1398 </param>
1399 </when>
1400 <when value="pmc">
1401 <param name="linkname" type="select" label="Link Name">
1402 <option value="None">All Links</option>
1403 <option value="cdd_pmc">PMC Links (cdd_pmc)</option>
1404 </param>
1405 </when>
1406 <when value="protein">
1407 <param name="linkname" type="select" label="Link Name">
1408 <option value="None">All Links</option>
1409 <option value="cdd_protein_summary"> (cdd_protein_summary)</option>
1410 <option value="cdd_protein">Protein Links (cdd_protein)</option>
1411 <option value="cdd_protein_specific_2">Specific Protein Links (cdd_protein_specific_2)</option>
1412 </param>
1413 </when>
1414 <when value="pcassay">
1415 <param name="linkname" type="select" label="Link Name">
1416 <option value="None">All Links</option>
1417 <option value="cdd_pcassay_protein_target">BioAssay via Protein Target (cdd_pcassay_protein_target)</option>
1418 </param>
1419 </when>
1420 <when value="pubmed">
1421 <param name="linkname" type="select" label="Link Name">
1422 <option value="None">All Links</option>
1423 <option value="cdd_pubmed">PubMed Links (cdd_pubmed)</option>
1424 </param>
1425 </when>
1426 <when value="sparcle">
1427 <param name="linkname" type="select" label="Link Name">
1428 <option value="None">All Links</option>
1429 <option value="cdd_sparcle">Functional Class (cdd_sparcle)</option>
1430 </param>
1431 </when>
1432 <when value="structure">
1433 <param name="linkname" type="select" label="Link Name">
1434 <option value="None">All Links</option>
1435 <option value="cdd_structure_family_2">Family Structure Links (cdd_structure_family_2)</option>
1436 <option value="cdd_structure">Structure Links (cdd_structure)</option>
1437 </param>
1438 </when>
1439 <when value="taxonomy">
1440 <param name="linkname" type="select" label="Link Name">
1441 <option value="None">All Links</option>
1442 <option value="cdd_taxonomy">Taxonomy Links (cdd_taxonomy)</option>
1443 </param>
1444 </when>
1445 </conditional>
1446 </when>
1447 <when value="gds">
1448 <conditional name="db_to">
1449 <param name="db_select_to" type="select" label="To NCBI Database">
1450 <option value="bioproject">BioProject (bioproject)</option>
1451 <option value="biosample">BioSample (biosample)</option>
1452 <option value="gds">GEO DataSets (gds)</option>
1453 <option value="geoprofiles">GEO Profiles (geoprofiles)</option>
1454 <option value="pmc">PMC (pmc)</option>
1455 <option value="pubmed">PubMed (pubmed)</option>
1456 <option value="sra">SRA (sra)</option>
1457 <option value="taxonomy">Taxonomy (taxonomy)</option>
1458 <option value="dbvar">dbVar (dbvar)</option>
1459 </param>
1460 <when value="bioproject">
1461 <param name="linkname" type="select" label="Link Name">
1462 <option value="None">All Links</option>
1463 <option value="gds_bioproject">BioProject Links (gds_bioproject)</option>
1464 </param>
1465 </when>
1466 <when value="biosample">
1467 <param name="linkname" type="select" label="Link Name">
1468 <option value="None">All Links</option>
1469 <option value="gds_biosample">BioSample links (gds_biosample)</option>
1470 </param>
1471 </when>
1472 <when value="gds">
1473 <param name="linkname" type="select" label="Link Name">
1474 <option value="None">All Links</option>
1475 <option value="gds_gds">Related DataSets (gds_gds)</option>
1476 <option value="gds_gds_similar">Similar studies (gds_gds_similar)</option>
1477 </param>
1478 </when>
1479 <when value="geoprofiles">
1480 <param name="linkname" type="select" label="Link Name">
1481 <option value="None">All Links</option>
1482 <option value="gds_geoprofiles">GEO Profiles (gds_geoprofiles)</option>
1483 </param>
1484 </when>
1485 <when value="pmc">
1486 <param name="linkname" type="select" label="Link Name">
1487 <option value="None">All Links</option>
1488 <option value="gds_pmc">PMC Links (gds_pmc)</option>
1489 </param>
1490 </when>
1491 <when value="pubmed">
1492 <param name="linkname" type="select" label="Link Name">
1493 <option value="None">All Links</option>
1494 <option value="gds_pubmed">PubMed Links (gds_pubmed)</option>
1495 </param>
1496 </when>
1497 <when value="sra">
1498 <param name="linkname" type="select" label="Link Name">
1499 <option value="None">All Links</option>
1500 <option value="gds_sra">SRA Links (gds_sra)</option>
1501 </param>
1502 </when>
1503 <when value="taxonomy">
1504 <param name="linkname" type="select" label="Link Name">
1505 <option value="None">All Links</option>
1506 <option value="gds_taxonomy">Taxonomy Links (gds_taxonomy)</option>
1507 </param>
1508 </when>
1509 <when value="dbvar">
1510 <param name="linkname" type="select" label="Link Name">
1511 <option value="None">All Links</option>
1512 <option value="gds_dbvar">dbVar Links (gds_dbvar)</option>
1513 </param>
1514 </when>
1515 </conditional>
1516 </when>
1517 <when value="geoprofiles">
1518 <conditional name="db_to">
1519 <param name="db_select_to" type="select" label="To NCBI Database">
1520 <option value="biosystems">BioSystems (biosystems)</option>
1521 <option value="gds">GEO DataSets (gds)</option>
1522 <option value="geoprofiles">GEO Profiles (geoprofiles)</option>
1523 <option value="gene">Gene (gene)</option>
1524 <option value="homologene">HomoloGene (homologene)</option>
1525 <option value="nuccore">Nucleotide (nuccore)</option>
1526 <option value="omim">OMIM (omim)</option>
1527 <option value="pmc">PMC (pmc)</option>
1528 <option value="pubmed">PubMed (pubmed)</option>
1529 <option value="sparcle">Sparcle (sparcle)</option>
1530 <option value="taxonomy">Taxonomy (taxonomy)</option>
1531 </param>
1532 <when value="biosystems">
1533 <param name="linkname" type="select" label="Link Name">
1534 <option value="None">All Links</option>
1535 <option value="geoprofiles_biosystems_gene">Pathways + GO (geoprofiles_biosystems_gene)</option>
1536 </param>
1537 </when>
1538 <when value="gds">
1539 <param name="linkname" type="select" label="Link Name">
1540 <option value="None">All Links</option>
1541 <option value="geoprofiles_gds">Related DataSets (geoprofiles_gds)</option>
1542 </param>
1543 </when>
1544 <when value="geoprofiles">
1545 <param name="linkname" type="select" label="Link Name">
1546 <option value="None">All Links</option>
1547 <option value="geoprofiles_geoprofiles_chr">Chromosome neighbors (geoprofiles_geoprofiles_chr)</option>
1548 <option value="geoprofiles_geoprofiles_homologs">Homologene neighbors (geoprofiles_geoprofiles_homologs)</option>
1549 <option value="geoprofiles_geoprofiles_prof">Profile neighbors (geoprofiles_geoprofiles_prof)</option>
1550 </param>
1551 </when>
1552 <when value="gene">
1553 <param name="linkname" type="select" label="Link Name">
1554 <option value="None">All Links</option>
1555 <option value="geoprofiles_gene">Gene Links (geoprofiles_gene)</option>
1556 </param>
1557 </when>
1558 <when value="homologene">
1559 <param name="linkname" type="select" label="Link Name">
1560 <option value="None">All Links</option>
1561 <option value="geoprofiles_homologene">HomoloGene Links (geoprofiles_homologene)</option>
1562 </param>
1563 </when>
1564 <when value="nuccore">
1565 <param name="linkname" type="select" label="Link Name">
1566 <option value="None">All Links</option>
1567 <option value="geoprofiles_nuccore">Nucleotide Links (geoprofiles_nuccore)</option>
1568 </param>
1569 </when>
1570 <when value="omim">
1571 <param name="linkname" type="select" label="Link Name">
1572 <option value="None">All Links</option>
1573 <option value="geoprofiles_omim">OMIM Links (geoprofiles_omim)</option>
1574 </param>
1575 </when>
1576 <when value="pmc">
1577 <param name="linkname" type="select" label="Link Name">
1578 <option value="None">All Links</option>
1579 <option value="geoprofiles_pmc">PMC Links (geoprofiles_pmc)</option>
1580 </param>
1581 </when>
1582 <when value="pubmed">
1583 <param name="linkname" type="select" label="Link Name">
1584 <option value="None">All Links</option>
1585 <option value="geoprofiles_pubmed">PubMed Links (geoprofiles_pubmed)</option>
1586 </param>
1587 </when>
1588 <when value="sparcle">
1589 <param name="linkname" type="select" label="Link Name">
1590 <option value="None">All Links</option>
1591 <option value="geoprofiles_sparcle">Functional Class (geoprofiles_sparcle)</option>
1592 </param>
1593 </when>
1594 <when value="taxonomy">
1595 <param name="linkname" type="select" label="Link Name">
1596 <option value="None">All Links</option>
1597 <option value="geoprofiles_taxonomy">Taxonomy Links (geoprofiles_taxonomy)</option>
1598 </param>
1599 </when>
1600 </conditional>
1601 </when>
1602 <when value="gtr">
1603 <conditional name="db_to">
1604 <param name="db_select_to" type="select" label="To NCBI Database">
1605 <option value="gene">Gene (gene)</option>
1606 <option value="medgen">MedGen (medgen)</option>
1607 <option value="omim">OMIM (omim)</option>
1608 <option value="orgtrack">Orgtrack (orgtrack)</option>
1609 <option value="sparcle">Sparcle (sparcle)</option>
1610 </param>
1611 <when value="gene">
1612 <param name="linkname" type="select" label="Link Name">
1613 <option value="None">All Links</option>
1614 <option value="gtr_gene">Gene (all) (gtr_gene)</option>
1615 </param>
1616 </when>
1617 <when value="medgen">
1618 <param name="linkname" type="select" label="Link Name">
1619 <option value="None">All Links</option>
1620 <option value="gtr_medgen">MedGen (gtr_medgen)</option>
1621 </param>
1622 </when>
1623 <when value="omim">
1624 <param name="linkname" type="select" label="Link Name">
1625 <option value="None">All Links</option>
1626 <option value="gtr_omim">OMIM (gtr_omim)</option>
1627 </param>
1628 </when>
1629 <when value="orgtrack">
1630 <param name="linkname" type="select" label="Link Name">
1631 <option value="None">All Links</option>
1632 <option value="gtr_orgtrack">Orgtrack (gtr_orgtrack)</option>
1633 </param>
1634 </when>
1635 <when value="sparcle">
1636 <param name="linkname" type="select" label="Link Name">
1637 <option value="None">All Links</option>
1638 <option value="gtr_sparcle">Functional Class (gtr_sparcle)</option>
1639 </param>
1640 </when>
1641 </conditional>
1642 </when>
1643 <when value="gapplus">
1644 <conditional name="db_to">
1645 <param name="db_select_to" type="select" label="To NCBI Database">
1646 <option value="gapplus">GaPPlus (gapplus)</option>
1647 </param>
1648 <when value="gapplus">
1649 <param name="linkname" type="select" label="Link Name">
1650 <option value="none">All Links</option>
1651 </param>
1652 </when>
1653 </conditional>
1654 </when>
1655 <when value="gene">
1656 <conditional name="db_to">
1657 <param name="db_select_to" type="select" label="To NCBI Database">
1658 <option value="bioproject">BioProject (bioproject)</option>
1659 <option value="biosystems">BioSystems (biosystems)</option>
1660 <option value="books">Books (books)</option>
1661 <option value="clinvar">ClinVar (clinvar)</option>
1662 <option value="cdd">Conserved Domains (cdd)</option>
1663 <option value="geoprofiles">GEO Profiles (geoprofiles)</option>
1664 <option value="gtr">GTR (gtr)</option>
1665 <option value="gene">Gene (gene)</option>
1666 <option value="genome">Genome (genome)</option>
1667 <option value="homologene">HomoloGene (homologene)</option>
1668 <option value="medgen">MedGen (medgen)</option>
1669 <option value="nuccore">Nucleotide (nuccore)</option>
1670 <option value="nucleotide">Nucleotide (nucleotide)</option>
1671 <option value="omim">OMIM (omim)</option>
1672 <option value="pmc">PMC (pmc)</option>
1673 <option value="protein">Protein (protein)</option>
1674 <option value="proteinclusters">Protein Clusters (proteinclusters)</option>
1675 <option value="pcassay">PubChem BioAssay (pcassay)</option>
1676 <option value="pccompound">PubChem Compound (pccompound)</option>
1677 <option value="pcsubstance">PubChem Substance (pcsubstance)</option>
1678 <option value="pubmed">PubMed (pubmed)</option>
1679 <option value="snp">SNP (snp)</option>
1680 <option value="sparcle">Sparcle (sparcle)</option>
1681 <option value="structure">Structure (structure)</option>
1682 <option value="taxonomy">Taxonomy (taxonomy)</option>
1683 <option value="gap">dbGaP (gap)</option>
1684 <option value="dbvar">dbVar (dbvar)</option>
1685 </param>
1686 <when value="bioproject">
1687 <param name="linkname" type="select" label="Link Name">
1688 <option value="None">All Links</option>
1689 <option value="gene_bioproject">BioProjects (gene_bioproject)</option>
1690 </param>
1691 </when>
1692 <when value="biosystems">
1693 <param name="linkname" type="select" label="Link Name">
1694 <option value="None">All Links</option>
1695 <option value="gene_biosystems">BioSystem Links (gene_biosystems)</option>
1696 </param>
1697 </when>
1698 <when value="books">
1699 <param name="linkname" type="select" label="Link Name">
1700 <option value="None">All Links</option>
1701 <option value="gene_books">Books Links (gene_books)</option>
1702 </param>
1703 </when>
1704 <when value="clinvar">
1705 <param name="linkname" type="select" label="Link Name">
1706 <option value="None">All Links</option>
1707 <option value="gene_clinvar">ClinVar (gene_clinvar)</option>
1708 <option value="gene_clinvar_specific">Related gene-specific medical variations (gene_clinvar_specific)</option>
1709 </param>
1710 </when>
1711 <when value="cdd">
1712 <param name="linkname" type="select" label="Link Name">
1713 <option value="None">All Links</option>
1714 <option value="gene_cdd">Conserved Domain Links (gene_cdd)</option>
1715 </param>
1716 </when>
1717 <when value="geoprofiles">
1718 <param name="linkname" type="select" label="Link Name">
1719 <option value="None">All Links</option>
1720 <option value="gene_geoprofiles">GEO Profile Links (gene_geoprofiles)</option>
1721 </param>
1722 </when>
1723 <when value="gtr">
1724 <param name="linkname" type="select" label="Link Name">
1725 <option value="None">All Links</option>
1726 <option value="gene_gtr">GTR (gene_gtr)</option>
1727 </param>
1728 </when>
1729 <when value="gene">
1730 <param name="linkname" type="select" label="Link Name">
1731 <option value="None">All Links</option>
1732 <option value="gene_gene_neighbors">Gene neighbors (gene_gene_neighbors)</option>
1733 <option value="gene_gene_h3k4me3">Genes with a similar H3K4me3 profile (gene_gene_h3k4me3)</option>
1734 </param>
1735 </when>
1736 <when value="genome">
1737 <param name="linkname" type="select" label="Link Name">
1738 <option value="None">All Links</option>
1739 <option value="gene_genome">Genome Links (gene_genome)</option>
1740 </param>
1741 </when>
1742 <when value="homologene">
1743 <param name="linkname" type="select" label="Link Name">
1744 <option value="None">All Links</option>
1745 <option value="gene_homologene">HomoloGene Links (gene_homologene)</option>
1746 </param>
1747 </when>
1748 <when value="medgen">
1749 <param name="linkname" type="select" label="Link Name">
1750 <option value="None">All Links</option>
1751 <option value="gene_medgen_diseases">MedGen (gene_medgen_diseases)</option>
1752 </param>
1753 </when>
1754 <when value="nuccore">
1755 <param name="linkname" type="select" label="Link Name">
1756 <option value="None">All Links</option>
1757 <option value="gene_nuccore">Nucleotide Links (gene_nuccore)</option>
1758 <option value="gene_nuccore_mgc">Nucleotide NIH cDNA clone links (gene_nuccore_mgc)</option>
1759 <option value="gene_nuccore_refseqrna">RefSeq RNA Links (gene_nuccore_refseqrna)</option>
1760 <option value="gene_nuccore_refseqgene">RefSeqGene Links (gene_nuccore_refseqgene)</option>
1761 </param>
1762 </when>
1763 <when value="nucleotide">
1764 <param name="linkname" type="select" label="Link Name">
1765 <option value="None">All Links</option>
1766 <option value="gene_nucleotide_mgc_url"> (gene_nucleotide_mgc_url)</option>
1767 </param>
1768 </when>
1769 <when value="omim">
1770 <param name="linkname" type="select" label="Link Name">
1771 <option value="None">All Links</option>
1772 <option value="gene_omim">OMIM Links (gene_omim)</option>
1773 </param>
1774 </when>
1775 <when value="pmc">
1776 <param name="linkname" type="select" label="Link Name">
1777 <option value="None">All Links</option>
1778 <option value="gene_pmc_nucleotide">Full text in PMC (nucleotide) (gene_pmc_nucleotide)</option>
1779 <option value="gene_pmc">PMC Links (gene_pmc)</option>
1780 </param>
1781 </when>
1782 <when value="protein">
1783 <param name="linkname" type="select" label="Link Name">
1784 <option value="None">All Links</option>
1785 <option value="gene_protein">Protein Links (gene_protein)</option>
1786 <option value="gene_protein_refseq">RefSeq Protein Links (gene_protein_refseq)</option>
1787 </param>
1788 </when>
1789 <when value="proteinclusters">
1790 <param name="linkname" type="select" label="Link Name">
1791 <option value="None">All Links</option>
1792 <option value="gene_proteinclusters">Protein Cluster Links (gene_proteinclusters)</option>
1793 </param>
1794 </when>
1795 <when value="pcassay">
1796 <param name="linkname" type="select" label="Link Name">
1797 <option value="None">All Links</option>
1798 <option value="gene_pcassay_alltarget_list">BioAssay by Target (List) (gene_pcassay_alltarget_list)</option>
1799 <option value="gene_pcassay_alltarget_summary">BioAssay by Target (Summary) (gene_pcassay_alltarget_summary)</option>
1800 <option value="gene_pcassay_target">BioAssay, by Gene target (gene_pcassay_target)</option>
1801 <option value="gene_pcassay_rnai_active">BioAssays, RNAi Target, Active (gene_pcassay_rnai_active)</option>
1802 <option value="gene_pcassay_rnai">BioAssays, RNAi Target, Tested (gene_pcassay_rnai)</option>
1803 </param>
1804 </when>
1805 <when value="pccompound">
1806 <param name="linkname" type="select" label="Link Name">
1807 <option value="None">All Links</option>
1808 <option value="gene_pccompound">PubChem Compound Links (gene_pccompound)</option>
1809 </param>
1810 </when>
1811 <when value="pcsubstance">
1812 <param name="linkname" type="select" label="Link Name">
1813 <option value="None">All Links</option>
1814 <option value="gene_pcsubstance">PubChem Substance Links (gene_pcsubstance)</option>
1815 </param>
1816 </when>
1817 <when value="pubmed">
1818 <param name="linkname" type="select" label="Link Name">
1819 <option value="None">All Links</option>
1820 <option value="gene_pubmed_rif">PubMed (GeneRIF) Links (gene_pubmed_rif)</option>
1821 <option value="gene_pubmed_citedinomim">PubMed (OMIM) Links (gene_pubmed_citedinomim)</option>
1822 <option value="gene_pubmed_pmc_nucleotide">PubMed (nucleotide/PMC) (gene_pubmed_pmc_nucleotide)</option>
1823 <option value="gene_pubmed">PubMed Links (gene_pubmed)</option>
1824 </param>
1825 </when>
1826 <when value="snp">
1827 <param name="linkname" type="select" label="Link Name">
1828 <option value="None">All Links</option>
1829 <option value="gene_snp_geneview"> (gene_snp_geneview)</option>
1830 <option value="gene_snp">SNP Links (gene_snp)</option>
1831 </param>
1832 </when>
1833 <when value="sparcle">
1834 <param name="linkname" type="select" label="Link Name">
1835 <option value="None">All Links</option>
1836 <option value="gene_sparcle">Functional Class (gene_sparcle)</option>
1837 </param>
1838 </when>
1839 <when value="structure">
1840 <param name="linkname" type="select" label="Link Name">
1841 <option value="None">All Links</option>
1842 <option value="gene_structure">3D structures (gene_structure)</option>
1843 </param>
1844 </when>
1845 <when value="taxonomy">
1846 <param name="linkname" type="select" label="Link Name">
1847 <option value="None">All Links</option>
1848 <option value="gene_taxonomy">Taxonomy Links (gene_taxonomy)</option>
1849 </param>
1850 </when>
1851 <when value="gap">
1852 <param name="linkname" type="select" label="Link Name">
1853 <option value="None">All Links</option>
1854 <option value="gene_gap">GAP Links (gene_gap)</option>
1855 </param>
1856 </when>
1857 <when value="dbvar">
1858 <param name="linkname" type="select" label="Link Name">
1859 <option value="None">All Links</option>
1860 <option value="gene_dbvar">dbVar (gene_dbvar)</option>
1861 </param>
1862 </when>
1863 </conditional>
1864 </when>
1865 <when value="genome">
1866 <conditional name="db_to">
1867 <param name="db_select_to" type="select" label="To NCBI Database">
1868 <option value="assembly">Assembly (assembly)</option>
1869 <option value="bioproject">BioProject (bioproject)</option>
1870 <option value="gene">Gene (gene)</option>
1871 <option value="nuccore">Nucleotide (nuccore)</option>
1872 <option value="protein">Protein (protein)</option>
1873 <option value="proteinclusters">Protein Clusters (proteinclusters)</option>
1874 <option value="pubmed">PubMed (pubmed)</option>
1875 <option value="taxonomy">Taxonomy (taxonomy)</option>
1876 </param>
1877 <when value="assembly">
1878 <param name="linkname" type="select" label="Link Name">
1879 <option value="None">All Links</option>
1880 <option value="genome_assembly">Assembly (genome_assembly)</option>
1881 </param>
1882 </when>
1883 <when value="bioproject">
1884 <param name="linkname" type="select" label="Link Name">
1885 <option value="None">All Links</option>
1886 <option value="genome_bioproject">BioProject Links (genome_bioproject)</option>
1887 </param>
1888 </when>
1889 <when value="gene">
1890 <param name="linkname" type="select" label="Link Name">
1891 <option value="None">All Links</option>
1892 <option value="genome_gene">Gene Links (genome_gene)</option>
1893 </param>
1894 </when>
1895 <when value="nuccore">
1896 <param name="linkname" type="select" label="Link Name">
1897 <option value="None">All Links</option>
1898 <option value="genome_nuccore">Components (genome_nuccore)</option>
1899 <option value="genome_nuccore_samespecies">Other genomes for species (genome_nuccore_samespecies)</option>
1900 </param>
1901 </when>
1902 <when value="protein">
1903 <param name="linkname" type="select" label="Link Name">
1904 <option value="None">All Links</option>
1905 <option value="genome_protein">Protein Links (genome_protein)</option>
1906 </param>
1907 </when>
1908 <when value="proteinclusters">
1909 <param name="linkname" type="select" label="Link Name">
1910 <option value="None">All Links</option>
1911 <option value="genome_proteinclusters">Protein Cluster Links (genome_proteinclusters)</option>
1912 </param>
1913 </when>
1914 <when value="pubmed">
1915 <param name="linkname" type="select" label="Link Name">
1916 <option value="None">All Links</option>
1917 <option value="genome_pubmed">PubMed Links (genome_pubmed)</option>
1918 </param>
1919 </when>
1920 <when value="taxonomy">
1921 <param name="linkname" type="select" label="Link Name">
1922 <option value="None">All Links</option>
1923 <option value="genome_taxonomy">Taxonomy Links (genome_taxonomy)</option>
1924 </param>
1925 </when>
1926 </conditional>
1927 </when>
1928 <when value="homologene">
1929 <conditional name="db_to">
1930 <param name="db_select_to" type="select" label="To NCBI Database">
1931 <option value="biosystems">BioSystems (biosystems)</option>
1932 <option value="cdd">Conserved Domains (cdd)</option>
1933 <option value="geoprofiles">GEO Profiles (geoprofiles)</option>
1934 <option value="gene">Gene (gene)</option>
1935 <option value="homologene">HomoloGene (homologene)</option>
1936 <option value="nuccore">Nucleotide (nuccore)</option>
1937 <option value="omim">OMIM (omim)</option>
1938 <option value="pmc">PMC (pmc)</option>
1939 <option value="protein">Protein (protein)</option>
1940 <option value="pubmed">PubMed (pubmed)</option>
1941 <option value="sparcle">Sparcle (sparcle)</option>
1942 <option value="taxonomy">Taxonomy (taxonomy)</option>
1943 </param>
1944 <when value="biosystems">
1945 <param name="linkname" type="select" label="Link Name">
1946 <option value="None">All Links</option>
1947 <option value="homologene_biosystems">BioSystems (homologene_biosystems)</option>
1948 </param>
1949 </when>
1950 <when value="cdd">
1951 <param name="linkname" type="select" label="Link Name">
1952 <option value="None">All Links</option>
1953 <option value="homologene_cdd">Conserved Domain Links (homologene_cdd)</option>
1954 </param>
1955 </when>
1956 <when value="geoprofiles">
1957 <param name="linkname" type="select" label="Link Name">
1958 <option value="None">All Links</option>
1959 <option value="homologene_geoprofiles">GEO Profile Links (homologene_geoprofiles)</option>
1960 </param>
1961 </when>
1962 <when value="gene">
1963 <param name="linkname" type="select" label="Link Name">
1964 <option value="None">All Links</option>
1965 <option value="homologene_gene">Gene Links (homologene_gene)</option>
1966 </param>
1967 </when>
1968 <when value="homologene">
1969 <param name="linkname" type="select" label="Link Name">
1970 <option value="None">All Links</option>
1971 <option value="homologene_homologene">Related HomoloGene Links (homologene_homologene)</option>
1972 </param>
1973 </when>
1974 <when value="nuccore">
1975 <param name="linkname" type="select" label="Link Name">
1976 <option value="None">All Links</option>
1977 <option value="homologene_nuccore">Nucleotide Links (homologene_nuccore)</option>
1978 </param>
1979 </when>
1980 <when value="omim">
1981 <param name="linkname" type="select" label="Link Name">
1982 <option value="None">All Links</option>
1983 <option value="homologene_omim">OMIM Links (homologene_omim)</option>
1984 </param>
1985 </when>
1986 <when value="pmc">
1987 <param name="linkname" type="select" label="Link Name">
1988 <option value="None">All Links</option>
1989 <option value="homologene_pmc">PMC Links (homologene_pmc)</option>
1990 </param>
1991 </when>
1992 <when value="protein">
1993 <param name="linkname" type="select" label="Link Name">
1994 <option value="None">All Links</option>
1995 <option value="homologene_protein">Protein Links (homologene_protein)</option>
1996 </param>
1997 </when>
1998 <when value="pubmed">
1999 <param name="linkname" type="select" label="Link Name">
2000 <option value="None">All Links</option>
2001 <option value="homologene_pubmed">PubMed Links (homologene_pubmed)</option>
2002 </param>
2003 </when>
2004 <when value="sparcle">
2005 <param name="linkname" type="select" label="Link Name">
2006 <option value="None">All Links</option>
2007 <option value="homologene_sparcle">Functional Class (homologene_sparcle)</option>
2008 </param>
2009 </when>
2010 <when value="taxonomy">
2011 <param name="linkname" type="select" label="Link Name">
2012 <option value="None">All Links</option>
2013 <option value="homologene_taxonomy">Taxonomy Links (homologene_taxonomy)</option>
2014 </param>
2015 </when>
2016 </conditional>
2017 </when>
2018 <when value="ipg">
2019 <conditional name="db_to">
2020 <param name="db_select_to" type="select" label="To NCBI Database">
2021 <option value="bioproject">BioProject (bioproject)</option>
2022 <option value="taxonomy">Taxonomy (taxonomy)</option>
2023 </param>
2024 <when value="bioproject">
2025 <param name="linkname" type="select" label="Link Name">
2026 <option value="None">All Links</option>
2027 <option value="ipg_bioproject">BioProject Links (ipg_bioproject)</option>
2028 </param>
2029 </when>
2030 <when value="taxonomy">
2031 <param name="linkname" type="select" label="Link Name">
2032 <option value="None">All Links</option>
2033 <option value="ipg_taxonomy">Taxonomy Links (ipg_taxonomy)</option>
2034 </param>
2035 </when>
2036 </conditional>
2037 </when>
2038 <when value="mesh">
2039 <conditional name="db_to">
2040 <param name="db_select_to" type="select" label="To NCBI Database">
2041 <option value="medgen">MedGen (medgen)</option>
2042 <option value="pccompound">PubChem Compound (pccompound)</option>
2043 <option value="taxonomy">Taxonomy (taxonomy)</option>
2044 <option value="gap">dbGaP (gap)</option>
2045 </param>
2046 <when value="medgen">
2047 <param name="linkname" type="select" label="Link Name">
2048 <option value="None">All Links</option>
2049 <option value="mesh_medgen">MedGen (mesh_medgen)</option>
2050 </param>
2051 </when>
2052 <when value="pccompound">
2053 <param name="linkname" type="select" label="Link Name">
2054 <option value="None">All Links</option>
2055 <option value="mesh_pccompound">PubChem Compound Links (mesh_pccompound)</option>
2056 </param>
2057 </when>
2058 <when value="taxonomy">
2059 <param name="linkname" type="select" label="Link Name">
2060 <option value="None">All Links</option>
2061 <option value="mesh_taxonomy">Taxonomy Links (mesh_taxonomy)</option>
2062 </param>
2063 </when>
2064 <when value="gap">
2065 <param name="linkname" type="select" label="Link Name">
2066 <option value="None">All Links</option>
2067 <option value="mesh_gap">dbGaP Links (mesh_gap)</option>
2068 </param>
2069 </when>
2070 </conditional>
2071 </when>
2072 <when value="medgen">
2073 <conditional name="db_to">
2074 <param name="db_select_to" type="select" label="To NCBI Database">
2075 <option value="biosystems">BioSystems (biosystems)</option>
2076 <option value="books">Books (books)</option>
2077 <option value="clinvar">ClinVar (clinvar)</option>
2078 <option value="gtr">GTR (gtr)</option>
2079 <option value="gene">Gene (gene)</option>
2080 <option value="mesh">MeSH (mesh)</option>
2081 <option value="omim">OMIM (omim)</option>
2082 <option value="pmc">PMC (pmc)</option>
2083 <option value="pubmed">PubMed (pubmed)</option>
2084 <option value="sparcle">Sparcle (sparcle)</option>
2085 <option value="gap">dbGaP (gap)</option>
2086 </param>
2087 <when value="biosystems">
2088 <param name="linkname" type="select" label="Link Name">
2089 <option value="None">All Links</option>
2090 <option value="medgen_biosystems_gene_diseases">Pathways + GO (medgen_biosystems_gene_diseases)</option>
2091 </param>
2092 </when>
2093 <when value="books">
2094 <param name="linkname" type="select" label="Link Name">
2095 <option value="None">All Links</option>
2096 <option value="medgen_books">NCBI Bookshelf (medgen_books)</option>
2097 </param>
2098 </when>
2099 <when value="clinvar">
2100 <param name="linkname" type="select" label="Link Name">
2101 <option value="None">All Links</option>
2102 <option value="medgen_clinvar">ClinVar (medgen_clinvar)</option>
2103 </param>
2104 </when>
2105 <when value="gtr">
2106 <param name="linkname" type="select" label="Link Name">
2107 <option value="None">All Links</option>
2108 <option value="medgen_gtr">GTR (medgen_gtr)</option>
2109 <option value="medgen_gtr_tests_clinical">GTR(Clinical) (medgen_gtr_tests_clinical)</option>
2110 <option value="medgen_gtr_tests_research">GTR(Research) (medgen_gtr_tests_research)</option>
2111 </param>
2112 </when>
2113 <when value="gene">
2114 <param name="linkname" type="select" label="Link Name">
2115 <option value="None">All Links</option>
2116 <option value="medgen_gene_diseases">Gene (medgen_gene_diseases)</option>
2117 </param>
2118 </when>
2119 <when value="mesh">
2120 <param name="linkname" type="select" label="Link Name">
2121 <option value="None">All Links</option>
2122 <option value="medgen_mesh">MeSH (medgen_mesh)</option>
2123 </param>
2124 </when>
2125 <when value="omim">
2126 <param name="linkname" type="select" label="Link Name">
2127 <option value="None">All Links</option>
2128 <option value="medgen_omim">OMIM (medgen_omim)</option>
2129 <option value="medgen_omim_gene">OMIM(Genes) (medgen_omim_gene)</option>
2130 </param>
2131 </when>
2132 <when value="pmc">
2133 <param name="linkname" type="select" label="Link Name">
2134 <option value="None">All Links</option>
2135 <option value="medgen_pmc">PMC Articles (medgen_pmc)</option>
2136 </param>
2137 </when>
2138 <when value="pubmed">
2139 <param name="linkname" type="select" label="Link Name">
2140 <option value="None">All Links</option>
2141 <option value="medgen_pubmed_bookshelf_cited">PubMed (Bookshelf cited) (medgen_pubmed_bookshelf_cited)</option>
2142 <option value="medgen_pubmed_genereviews">PubMed (GeneReviews) (medgen_pubmed_genereviews)</option>
2143 <option value="medgen_pubmed_omim">PubMed (OMIM) (medgen_pubmed_omim)</option>
2144 <option value="medgen_pubmed">PubMed (medgen_pubmed)</option>
2145 </param>
2146 </when>
2147 <when value="sparcle">
2148 <param name="linkname" type="select" label="Link Name">
2149 <option value="None">All Links</option>
2150 <option value="medgen_sparcle_diseases">Functional Class (medgen_sparcle_diseases)</option>
2151 </param>
2152 </when>
2153 <when value="gap">
2154 <param name="linkname" type="select" label="Link Name">
2155 <option value="None">All Links</option>
2156 <option value="medgen_gap">dbGaP (medgen_gap)</option>
2157 </param>
2158 </when>
2159 </conditional>
2160 </when>
2161 <when value="ncbisearch">
2162 <conditional name="db_to">
2163 <param name="db_select_to" type="select" label="To NCBI Database">
2164 <option value="ncbisearch">NCBI Web Site (ncbisearch)</option>
2165 </param>
2166 <when value="ncbisearch">
2167 <param name="linkname" type="select" label="Link Name">
2168 <option value="none">All Links</option>
2169 </param>
2170 </when>
2171 </conditional>
2172 </when>
2173 <when value="nlmcatalog">
2174 <conditional name="db_to">
2175 <param name="db_select_to" type="select" label="To NCBI Database">
2176 <option value="books">Books (books)</option>
2177 <option value="pubmed">PubMed (pubmed)</option>
2178 </param>
2179 <when value="books">
2180 <param name="linkname" type="select" label="Link Name">
2181 <option value="None">All Links</option>
2182 <option value="nlmcatalog_books">Book Links (nlmcatalog_books)</option>
2183 </param>
2184 </when>
2185 <when value="pubmed">
2186 <param name="linkname" type="select" label="Link Name">
2187 <option value="None">All Links</option>
2188 <option value="nlmcatalog_pubmed">PubMed Links (nlmcatalog_pubmed)</option>
2189 </param>
2190 </when>
2191 </conditional>
2192 </when>
2193 <when value="nuccore">
2194 <conditional name="db_to">
2195 <param name="db_select_to" type="select" label="To NCBI Database">
2196 <option value="assembly">Assembly (assembly)</option>
2197 <option value="bioproject">BioProject (bioproject)</option>
2198 <option value="biosample">BioSample (biosample)</option>
2199 <option value="biosystems">BioSystems (biosystems)</option>
2200 <option value="biocollections">Biocollections (biocollections)</option>
2201 <option value="geoprofiles">GEO Profiles (geoprofiles)</option>
2202 <option value="gene">Gene (gene)</option>
2203 <option value="genome">Genome (genome)</option>
2204 <option value="homologene">HomoloGene (homologene)</option>
2205 <option value="nuccore">Nucleotide (nuccore)</option>
2206 <option value="omim">OMIM (omim)</option>
2207 <option value="pmc">PMC (pmc)</option>
2208 <option value="popset">PopSet (popset)</option>
2209 <option value="protein">Protein (protein)</option>
2210 <option value="proteinclusters">Protein Clusters (proteinclusters)</option>
2211 <option value="pcassay">PubChem BioAssay (pcassay)</option>
2212 <option value="pccompound">PubChem Compound (pccompound)</option>
2213 <option value="pcsubstance">PubChem Substance (pcsubstance)</option>
2214 <option value="pubmed">PubMed (pubmed)</option>
2215 <option value="snp">SNP (snp)</option>
2216 <option value="sra">SRA (sra)</option>
2217 <option value="sparcle">Sparcle (sparcle)</option>
2218 <option value="structure">Structure (structure)</option>
2219 <option value="taxonomy">Taxonomy (taxonomy)</option>
2220 <option value="dbvar">dbVar (dbvar)</option>
2221 </param>
2222 <when value="assembly">
2223 <param name="linkname" type="select" label="Link Name">
2224 <option value="None">All Links</option>
2225 <option value="nuccore_assembly">Assembly (nuccore_assembly)</option>
2226 <option value="nuccore_assembly_wgscontig">Assembly (nuccore_assembly_wgscontig)</option>
2227 </param>
2228 </when>
2229 <when value="bioproject">
2230 <param name="linkname" type="select" label="Link Name">
2231 <option value="None">All Links</option>
2232 <option value="nuccore_bioproject">BioProject Links (nuccore_bioproject)</option>
2233 <option value="nuccore_bioproject_reference">Reference Genome BioProject Links (nuccore_bioproject_reference)</option>
2234 <option value="nuccore_bioproject_repr">Representative Genome BioProject Links (nuccore_bioproject_repr)</option>
2235 </param>
2236 </when>
2237 <when value="biosample">
2238 <param name="linkname" type="select" label="Link Name">
2239 <option value="None">All Links</option>
2240 <option value="nuccore_biosample">BioSample links (nuccore_biosample)</option>
2241 </param>
2242 </when>
2243 <when value="biosystems">
2244 <param name="linkname" type="select" label="Link Name">
2245 <option value="None">All Links</option>
2246 <option value="nuccore_biosystems">BioSystem Links (nuccore_biosystems)</option>
2247 </param>
2248 </when>
2249 <when value="biocollections">
2250 <param name="linkname" type="select" label="Link Name">
2251 <option value="None">All Links</option>
2252 <option value="nuccore_biocollections">BioCollections (nuccore_biocollections)</option>
2253 </param>
2254 </when>
2255 <when value="geoprofiles">
2256 <param name="linkname" type="select" label="Link Name">
2257 <option value="None">All Links</option>
2258 <option value="nuccore_geoprofiles">GEO Profiles Links (nuccore_geoprofiles)</option>
2259 </param>
2260 </when>
2261 <when value="gene">
2262 <param name="linkname" type="select" label="Link Name">
2263 <option value="None">All Links</option>
2264 <option value="nuccore_gene">Gene Links (nuccore_gene)</option>
2265 </param>
2266 </when>
2267 <when value="genome">
2268 <param name="linkname" type="select" label="Link Name">
2269 <option value="None">All Links</option>
2270 <option value="nuccore_genome">Genome (nuccore_genome)</option>
2271 <option value="nuccore_genome_samespecies">RefSeq genome for species (nuccore_genome_samespecies)</option>
2272 </param>
2273 </when>
2274 <when value="homologene">
2275 <param name="linkname" type="select" label="Link Name">
2276 <option value="None">All Links</option>
2277 <option value="nuccore_homologene">HomoloGene Links (nuccore_homologene)</option>
2278 </param>
2279 </when>
2280 <when value="nuccore">
2281 <param name="linkname" type="select" label="Link Name">
2282 <option value="None">All Links</option>
2283 <option value="nuccore_nuccore_mgc_refseq"> (nuccore_nuccore_mgc_refseq)</option>
2284 <option value="nuccore_mrna_nuccore">Annotated Genomic (nuccore_mrna_nuccore)</option>
2285 <option value="nuccore_comp_nuccore">Component Of (nuccore_comp_nuccore)</option>
2286 <option value="nuccore_nuccore_comp">Component(Core) Links (nuccore_nuccore_comp)</option>
2287 <option value="nuccore_nuccore_related">Genomic Neighbours (nuccore_nuccore_related)</option>
2288 <option value="nuccore_nuccore_rsgb">Identical GenBank (nuccore_nuccore_rsgb)</option>
2289 <option value="nuccore_nuccore_gbrs">Identical RefSeq (nuccore_nuccore_gbrs)</option>
2290 <option value="nuccore_nuccore_small_genome">Link to all segments from this genome (nuccore_nuccore_small_genome)</option>
2291 <option value="nuccore_nuccore_samespecies_rsgb">Other nucleotides for species (nuccore_nuccore_samespecies_rsgb)</option>
2292 <option value="nuccore_nuccore_mrna">RNA (nuccore_nuccore_mrna)</option>
2293 <option value="nuccore_nuccore_samespecies_gbrs">RefSeq nucleotide for species (nuccore_nuccore_samespecies_gbrs)</option>
2294 </param>
2295 </when>
2296 <when value="omim">
2297 <param name="linkname" type="select" label="Link Name">
2298 <option value="None">All Links</option>
2299 <option value="nuccore_omim">OMIM Links (nuccore_omim)</option>
2300 </param>
2301 </when>
2302 <when value="pmc">
2303 <param name="linkname" type="select" label="Link Name">
2304 <option value="None">All Links</option>
2305 <option value="nuccore_pmc">PMC Links (nuccore_pmc)</option>
2306 </param>
2307 </when>
2308 <when value="popset">
2309 <param name="linkname" type="select" label="Link Name">
2310 <option value="None">All Links</option>
2311 <option value="nuccore_popset">PopSet Links (nuccore_popset)</option>
2312 </param>
2313 </when>
2314 <when value="protein">
2315 <param name="linkname" type="select" label="Link Name">
2316 <option value="None">All Links</option>
2317 <option value="nuccore_protein_mgc_url"> (nuccore_protein_mgc_url)</option>
2318 <option value="nuccore_protein_wgs"> (nuccore_protein_wgs)</option>
2319 <option value="nuccore_protein_small_genome">Link to all proteins from this genome (nuccore_protein_small_genome)</option>
2320 <option value="nuccore_protein_mat_peptide">Mature Peptides (nuccore_protein_mat_peptide)</option>
2321 <option value="nuccore_protein">Protein Links (nuccore_protein)</option>
2322 <option value="nuccore_protein_tsa_vdb">Protein from TSA (nuccore_protein_tsa_vdb)</option>
2323 <option value="nuccore_protein_wgs_vdb">Protein from WGS (nuccore_protein_wgs_vdb)</option>
2324 <option value="nuccore_protein_tsa">Proteins in this TSA project (nuccore_protein_tsa)</option>
2325 </param>
2326 </when>
2327 <when value="proteinclusters">
2328 <param name="linkname" type="select" label="Link Name">
2329 <option value="None">All Links</option>
2330 <option value="nuccore_proteinclusters">Protein Cluster Links (nuccore_proteinclusters)</option>
2331 </param>
2332 </when>
2333 <when value="pcassay">
2334 <param name="linkname" type="select" label="Link Name">
2335 <option value="None">All Links</option>
2336 <option value="nuccore_pcassay">BioAssay Links (nuccore_pcassay)</option>
2337 <option value="nuccore_pcassay_rna_target">BioAssay by RNA Target (nuccore_pcassay_rna_target)</option>
2338 </param>
2339 </when>
2340 <when value="pccompound">
2341 <param name="linkname" type="select" label="Link Name">
2342 <option value="None">All Links</option>
2343 <option value="nuccore_pccompound">PubChem Compound Links (nuccore_pccompound)</option>
2344 </param>
2345 </when>
2346 <when value="pcsubstance">
2347 <param name="linkname" type="select" label="Link Name">
2348 <option value="None">All Links</option>
2349 <option value="nuccore_pcsubstance">PubChem Substance Links (nuccore_pcsubstance)</option>
2350 </param>
2351 </when>
2352 <when value="pubmed">
2353 <param name="linkname" type="select" label="Link Name">
2354 <option value="None">All Links</option>
2355 <option value="nuccore_pubmed_refseq">PubMed (RefSeq) Links (nuccore_pubmed_refseq)</option>
2356 <option value="nuccore_pubmed_weighted">PubMed (Weighted) Links (nuccore_pubmed_weighted)</option>
2357 <option value="nuccore_pubmed">PubMed Links (nuccore_pubmed)</option>
2358 </param>
2359 </when>
2360 <when value="snp">
2361 <param name="linkname" type="select" label="Link Name">
2362 <option value="None">All Links</option>
2363 <option value="nuccore_snp">SNP Links (nuccore_snp)</option>
2364 </param>
2365 </when>
2366 <when value="sra">
2367 <param name="linkname" type="select" label="Link Name">
2368 <option value="None">All Links</option>
2369 <option value="nuccore_sra">SRA Links (nuccore_sra)</option>
2370 <option value="nuccore_sra_wgs">SRA WGS (nuccore_sra_wgs)</option>
2371 </param>
2372 </when>
2373 <when value="sparcle">
2374 <param name="linkname" type="select" label="Link Name">
2375 <option value="None">All Links</option>
2376 <option value="nuccore_sparcle_mrna">Functional Class (nuccore_sparcle_mrna)</option>
2377 </param>
2378 </when>
2379 <when value="structure">
2380 <param name="linkname" type="select" label="Link Name">
2381 <option value="None">All Links</option>
2382 <option value="nuccore_structure">Structure Links (nuccore_structure)</option>
2383 </param>
2384 </when>
2385 <when value="taxonomy">
2386 <param name="linkname" type="select" label="Link Name">
2387 <option value="None">All Links</option>
2388 <option value="nuccore_taxonomy">Taxonomy Links (nuccore_taxonomy)</option>
2389 </param>
2390 </when>
2391 <when value="dbvar">
2392 <param name="linkname" type="select" label="Link Name">
2393 <option value="None">All Links</option>
2394 <option value="nuccore_dbvar">dbVar (nuccore_dbvar)</option>
2395 </param>
2396 </when>
2397 </conditional>
2398 </when>
2399 <when value="nucleotide">
2400 <conditional name="db_to">
2401 <param name="db_select_to" type="select" label="To NCBI Database">
2402 <option value="genome">Genome (genome)</option>
2403 </param>
2404 <when value="genome">
2405 <param name="linkname" type="select" label="Link Name">
2406 <option value="None">All Links</option>
2407 <option value="nucleotide_genome">Assembly to Genome (nucleotide_genome)</option>
2408 </param>
2409 </when>
2410 </conditional>
2411 </when>
2412 <when value="omim">
2413 <conditional name="db_to">
2414 <param name="db_select_to" type="select" label="To NCBI Database">
2415 <option value="biosample">BioSample (biosample)</option>
2416 <option value="biosystems">BioSystems (biosystems)</option>
2417 <option value="books">Books (books)</option>
2418 <option value="clinvar">ClinVar (clinvar)</option>
2419 <option value="geoprofiles">GEO Profiles (geoprofiles)</option>
2420 <option value="gtr">GTR (gtr)</option>
2421 <option value="gene">Gene (gene)</option>
2422 <option value="homologene">HomoloGene (homologene)</option>
2423 <option value="medgen">MedGen (medgen)</option>
2424 <option value="nuccore">Nucleotide (nuccore)</option>
2425 <option value="omim">OMIM (omim)</option>
2426 <option value="pmc">PMC (pmc)</option>
2427 <option value="protein">Protein (protein)</option>
2428 <option value="pcassay">PubChem BioAssay (pcassay)</option>
2429 <option value="pccompound">PubChem Compound (pccompound)</option>
2430 <option value="pcsubstance">PubChem Substance (pcsubstance)</option>
2431 <option value="pubmed">PubMed (pubmed)</option>
2432 <option value="sra">SRA (sra)</option>
2433 <option value="sparcle">Sparcle (sparcle)</option>
2434 <option value="structure">Structure (structure)</option>
2435 <option value="dbvar">dbVar (dbvar)</option>
2436 </param>
2437 <when value="biosample">
2438 <param name="linkname" type="select" label="Link Name">
2439 <option value="None">All Links</option>
2440 <option value="omim_biosample">OMIM links (omim_biosample)</option>
2441 </param>
2442 </when>
2443 <when value="biosystems">
2444 <param name="linkname" type="select" label="Link Name">
2445 <option value="None">All Links</option>
2446 <option value="omim_biosystems">BioSystem Links (omim_biosystems)</option>
2447 </param>
2448 </when>
2449 <when value="books">
2450 <param name="linkname" type="select" label="Link Name">
2451 <option value="None">All Links</option>
2452 <option value="omim_books">Book Links (omim_books)</option>
2453 </param>
2454 </when>
2455 <when value="clinvar">
2456 <param name="linkname" type="select" label="Link Name">
2457 <option value="None">All Links</option>
2458 <option value="omim_clinvar">ClinVar (omim_clinvar)</option>
2459 </param>
2460 </when>
2461 <when value="geoprofiles">
2462 <param name="linkname" type="select" label="Link Name">
2463 <option value="None">All Links</option>
2464 <option value="omim_geoprofiles">GEO Profile Links (omim_geoprofiles)</option>
2465 </param>
2466 </when>
2467 <when value="gtr">
2468 <param name="linkname" type="select" label="Link Name">
2469 <option value="None">All Links</option>
2470 <option value="omim_gtr">GTR (omim_gtr)</option>
2471 </param>
2472 </when>
2473 <when value="gene">
2474 <param name="linkname" type="select" label="Link Name">
2475 <option value="None">All Links</option>
2476 <option value="omim_gene">Gene Links (omim_gene)</option>
2477 </param>
2478 </when>
2479 <when value="homologene">
2480 <param name="linkname" type="select" label="Link Name">
2481 <option value="None">All Links</option>
2482 <option value="omim_homologene">HomoloGene Links (omim_homologene)</option>
2483 </param>
2484 </when>
2485 <when value="medgen">
2486 <param name="linkname" type="select" label="Link Name">
2487 <option value="None">All Links</option>
2488 <option value="omim_medgen">MedGen (omim_medgen)</option>
2489 <option value="omim_medgen_gene">MedGen (omim_medgen_gene)</option>
2490 </param>
2491 </when>
2492 <when value="nuccore">
2493 <param name="linkname" type="select" label="Link Name">
2494 <option value="None">All Links</option>
2495 <option value="omim_nuccore">Nucleotide Links (omim_nuccore)</option>
2496 </param>
2497 </when>
2498 <when value="omim">
2499 <param name="linkname" type="select" label="Link Name">
2500 <option value="None">All Links</option>
2501 <option value="omim_omim">Related Entries (omim_omim)</option>
2502 </param>
2503 </when>
2504 <when value="pmc">
2505 <param name="linkname" type="select" label="Link Name">
2506 <option value="None">All Links</option>
2507 <option value="omim_pmc">PMC Links (omim_pmc)</option>
2508 </param>
2509 </when>
2510 <when value="protein">
2511 <param name="linkname" type="select" label="Link Name">
2512 <option value="None">All Links</option>
2513 <option value="omim_protein">Protein Links (omim_protein)</option>
2514 </param>
2515 </when>
2516 <when value="pcassay">
2517 <param name="linkname" type="select" label="Link Name">
2518 <option value="None">All Links</option>
2519 <option value="omim_pcassay">PubChem BioAssay Links (omim_pcassay)</option>
2520 </param>
2521 </when>
2522 <when value="pccompound">
2523 <param name="linkname" type="select" label="Link Name">
2524 <option value="None">All Links</option>
2525 <option value="omim_pccompound">PubChem Compound Links (omim_pccompound)</option>
2526 </param>
2527 </when>
2528 <when value="pcsubstance">
2529 <param name="linkname" type="select" label="Link Name">
2530 <option value="None">All Links</option>
2531 <option value="omim_pcsubstance">PubChem Substance Links (omim_pcsubstance)</option>
2532 </param>
2533 </when>
2534 <when value="pubmed">
2535 <param name="linkname" type="select" label="Link Name">
2536 <option value="None">All Links</option>
2537 <option value="omim_pubmed_calculated">PubMed (calculated) Links (omim_pubmed_calculated)</option>
2538 <option value="omim_pubmed_cited">PubMed (cited) Links (omim_pubmed_cited)</option>
2539 </param>
2540 </when>
2541 <when value="sra">
2542 <param name="linkname" type="select" label="Link Name">
2543 <option value="None">All Links</option>
2544 <option value="omim_sra">Omim links (omim_sra)</option>
2545 </param>
2546 </when>
2547 <when value="sparcle">
2548 <param name="linkname" type="select" label="Link Name">
2549 <option value="None">All Links</option>
2550 <option value="omim_sparcle">Functional Class (omim_sparcle)</option>
2551 </param>
2552 </when>
2553 <when value="structure">
2554 <param name="linkname" type="select" label="Link Name">
2555 <option value="None">All Links</option>
2556 <option value="omim_structure">Structure Links (omim_structure)</option>
2557 </param>
2558 </when>
2559 <when value="dbvar">
2560 <param name="linkname" type="select" label="Link Name">
2561 <option value="None">All Links</option>
2562 <option value="omim_dbvar">dbVar (omim_dbvar)</option>
2563 </param>
2564 </when>
2565 </conditional>
2566 </when>
2567 <when value="orgtrack">
2568 <conditional name="db_to">
2569 <param name="db_select_to" type="select" label="To NCBI Database">
2570 <option value="gtr">GTR (gtr)</option>
2571 <option value="gene">Gene (gene)</option>
2572 <option value="medgen">MedGen (medgen)</option>
2573 </param>
2574 <when value="gtr">
2575 <param name="linkname" type="select" label="Link Name">
2576 <option value="None">All Links</option>
2577 <option value="orgtrack_gtr">GTR (orgtrack_gtr)</option>
2578 </param>
2579 </when>
2580 <when value="gene">
2581 <param name="linkname" type="select" label="Link Name">
2582 <option value="None">All Links</option>
2583 <option value="orgtrack_gene">GTR Lab to Genes (orgtrack_gene)</option>
2584 </param>
2585 </when>
2586 <when value="medgen">
2587 <param name="linkname" type="select" label="Link Name">
2588 <option value="None">All Links</option>
2589 <option value="orgtrack_medgen">MedGen (orgtrack_medgen)</option>
2590 </param>
2591 </when>
2592 </conditional>
2593 </when>
2594 <when value="pmc">
2595 <conditional name="db_to">
2596 <param name="db_select_to" type="select" label="To NCBI Database">
2597 <option value="bioproject">BioProject (bioproject)</option>
2598 <option value="biosystems">BioSystems (biosystems)</option>
2599 <option value="books">Books (books)</option>
2600 <option value="clinvar">ClinVar (clinvar)</option>
2601 <option value="cdd">Conserved Domains (cdd)</option>
2602 <option value="gds">GEO DataSets (gds)</option>
2603 <option value="geoprofiles">GEO Profiles (geoprofiles)</option>
2604 <option value="gene">Gene (gene)</option>
2605 <option value="homologene">HomoloGene (homologene)</option>
2606 <option value="medgen">MedGen (medgen)</option>
2607 <option value="nuccore">Nucleotide (nuccore)</option>
2608 <option value="omim">OMIM (omim)</option>
2609 <option value="popset">PopSet (popset)</option>
2610 <option value="protein">Protein (protein)</option>
2611 <option value="pcassay">PubChem BioAssay (pcassay)</option>
2612 <option value="pccompound">PubChem Compound (pccompound)</option>
2613 <option value="pcsubstance">PubChem Substance (pcsubstance)</option>
2614 <option value="pubmed">PubMed (pubmed)</option>
2615 <option value="snp">SNP (snp)</option>
2616 <option value="sra">SRA (sra)</option>
2617 <option value="structure">Structure (structure)</option>
2618 <option value="taxonomy">Taxonomy (taxonomy)</option>
2619 <option value="gap">dbGaP (gap)</option>
2620 </param>
2621 <when value="bioproject">
2622 <param name="linkname" type="select" label="Link Name">
2623 <option value="None">All Links</option>
2624 <option value="pmc_bioproject">BioProject Links (pmc_bioproject)</option>
2625 </param>
2626 </when>
2627 <when value="biosystems">
2628 <param name="linkname" type="select" label="Link Name">
2629 <option value="None">All Links</option>
2630 <option value="pmc_biosystems_pubmed">Pathways + GO (pmc_biosystems_pubmed)</option>
2631 </param>
2632 </when>
2633 <when value="books">
2634 <param name="linkname" type="select" label="Link Name">
2635 <option value="None">All Links</option>
2636 <option value="pmc_books_refs">Cited in Books (pmc_books_refs)</option>
2637 </param>
2638 </when>
2639 <when value="clinvar">
2640 <param name="linkname" type="select" label="Link Name">
2641 <option value="None">All Links</option>
2642 <option value="pmc_clinvar">ClinVar (pmc_clinvar)</option>
2643 </param>
2644 </when>
2645 <when value="cdd">
2646 <param name="linkname" type="select" label="Link Name">
2647 <option value="None">All Links</option>
2648 <option value="pmc_cdd">Conserved Domain Links (pmc_cdd)</option>
2649 </param>
2650 </when>
2651 <when value="gds">
2652 <param name="linkname" type="select" label="Link Name">
2653 <option value="None">All Links</option>
2654 <option value="pmc_gds">GEO DataSet Links (pmc_gds)</option>
2655 </param>
2656 </when>
2657 <when value="geoprofiles">
2658 <param name="linkname" type="select" label="Link Name">
2659 <option value="None">All Links</option>
2660 <option value="pmc_geoprofiles">GEO Profile Links (pmc_geoprofiles)</option>
2661 </param>
2662 </when>
2663 <when value="gene">
2664 <param name="linkname" type="select" label="Link Name">
2665 <option value="None">All Links</option>
2666 <option value="pmc_gene_nucleotide">Gene (nucleotide) (pmc_gene_nucleotide)</option>
2667 <option value="pmc_gene">Gene Links (pmc_gene)</option>
2668 </param>
2669 </when>
2670 <when value="homologene">
2671 <param name="linkname" type="select" label="Link Name">
2672 <option value="None">All Links</option>
2673 <option value="pmc_homologene">HomoloGene Links (pmc_homologene)</option>
2674 </param>
2675 </when>
2676 <when value="medgen">
2677 <param name="linkname" type="select" label="Link Name">
2678 <option value="None">All Links</option>
2679 <option value="pmc_medgen">MedGen (pmc_medgen)</option>
2680 </param>
2681 </when>
2682 <when value="nuccore">
2683 <param name="linkname" type="select" label="Link Name">
2684 <option value="None">All Links</option>
2685 <option value="pmc_nuccore">Nucleotide Links (pmc_nuccore)</option>
2686 </param>
2687 </when>
2688 <when value="omim">
2689 <param name="linkname" type="select" label="Link Name">
2690 <option value="None">All Links</option>
2691 <option value="pmc_omim">OMIM Links (pmc_omim)</option>
2692 </param>
2693 </when>
2694 <when value="popset">
2695 <param name="linkname" type="select" label="Link Name">
2696 <option value="None">All Links</option>
2697 <option value="pmc_popset">PopSet Links (pmc_popset)</option>
2698 </param>
2699 </when>
2700 <when value="protein">
2701 <param name="linkname" type="select" label="Link Name">
2702 <option value="None">All Links</option>
2703 <option value="pmc_protein">Protein Links (pmc_protein)</option>
2704 </param>
2705 </when>
2706 <when value="pcassay">
2707 <param name="linkname" type="select" label="Link Name">
2708 <option value="None">All Links</option>
2709 <option value="pmc_pcassay">BioAssay Links (pmc_pcassay)</option>
2710 </param>
2711 </when>
2712 <when value="pccompound">
2713 <param name="linkname" type="select" label="Link Name">
2714 <option value="None">All Links</option>
2715 <option value="pmc_pccompound">Compound Links (pmc_pccompound)</option>
2716 </param>
2717 </when>
2718 <when value="pcsubstance">
2719 <param name="linkname" type="select" label="Link Name">
2720 <option value="None">All Links</option>
2721 <option value="pmc_pcsubstance">Substance Links (pmc_pcsubstance)</option>
2722 </param>
2723 </when>
2724 <when value="pubmed">
2725 <param name="linkname" type="select" label="Link Name">
2726 <option value="None">All Links</option>
2727 <option value="pmc_pubmed_embargo"> (pmc_pubmed_embargo)</option>
2728 <option value="pmc_refs_pubmed">Cited Articles (pmc_refs_pubmed)</option>
2729 <option value="pmc_pubmed">PubMed Links (pmc_pubmed)</option>
2730 </param>
2731 </when>
2732 <when value="snp">
2733 <param name="linkname" type="select" label="Link Name">
2734 <option value="None">All Links</option>
2735 <option value="pmc_snp">SNP Links (pmc_snp)</option>
2736 </param>
2737 </when>
2738 <when value="sra">
2739 <param name="linkname" type="select" label="Link Name">
2740 <option value="None">All Links</option>
2741 <option value="pmc_sra">SRA (pmc_sra)</option>
2742 </param>
2743 </when>
2744 <when value="structure">
2745 <param name="linkname" type="select" label="Link Name">
2746 <option value="None">All Links</option>
2747 <option value="pmc_structure">Structure Links (pmc_structure)</option>
2748 </param>
2749 </when>
2750 <when value="taxonomy">
2751 <param name="linkname" type="select" label="Link Name">
2752 <option value="None">All Links</option>
2753 <option value="pmc_taxonomy">Taxonomy Links (pmc_taxonomy)</option>
2754 </param>
2755 </when>
2756 <when value="gap">
2757 <param name="linkname" type="select" label="Link Name">
2758 <option value="None">All Links</option>
2759 <option value="pmc_gap">dbGaP Links (pmc_gap)</option>
2760 </param>
2761 </when>
2762 </conditional>
2763 </when>
2764 <when value="popset">
2765 <conditional name="db_to">
2766 <param name="db_select_to" type="select" label="To NCBI Database">
2767 <option value="bioproject">BioProject (bioproject)</option>
2768 <option value="biocollections">Biocollections (biocollections)</option>
2769 <option value="nuccore">Nucleotide (nuccore)</option>
2770 <option value="pmc">PMC (pmc)</option>
2771 <option value="popset">PopSet (popset)</option>
2772 <option value="protein">Protein (protein)</option>
2773 <option value="pubmed">PubMed (pubmed)</option>
2774 <option value="taxonomy">Taxonomy (taxonomy)</option>
2775 </param>
2776 <when value="bioproject">
2777 <param name="linkname" type="select" label="Link Name">
2778 <option value="None">All Links</option>
2779 <option value="popset_bioproject">BioProject Links (popset_bioproject)</option>
2780 </param>
2781 </when>
2782 <when value="biocollections">
2783 <param name="linkname" type="select" label="Link Name">
2784 <option value="None">All Links</option>
2785 <option value="popset_biocollections">BioCollections (popset_biocollections)</option>
2786 </param>
2787 </when>
2788 <when value="nuccore">
2789 <param name="linkname" type="select" label="Link Name">
2790 <option value="None">All Links</option>
2791 <option value="popset_nuccore">Nucleotide Links (popset_nuccore)</option>
2792 </param>
2793 </when>
2794 <when value="pmc">
2795 <param name="linkname" type="select" label="Link Name">
2796 <option value="None">All Links</option>
2797 <option value="popset_pmc"> (popset_pmc)</option>
2798 </param>
2799 </when>
2800 <when value="popset">
2801 <param name="linkname" type="select" label="Link Name">
2802 <option value="None">All Links</option>
2803 <option value="popset_popset">PopSet (popset_popset)</option>
2804 </param>
2805 </when>
2806 <when value="protein">
2807 <param name="linkname" type="select" label="Link Name">
2808 <option value="None">All Links</option>
2809 <option value="popset_protein">Protein Links (popset_protein)</option>
2810 </param>
2811 </when>
2812 <when value="pubmed">
2813 <param name="linkname" type="select" label="Link Name">
2814 <option value="None">All Links</option>
2815 <option value="popset_pubmed">PubMed Links (popset_pubmed)</option>
2816 </param>
2817 </when>
2818 <when value="taxonomy">
2819 <param name="linkname" type="select" label="Link Name">
2820 <option value="None">All Links</option>
2821 <option value="popset_taxonomy">Taxonomy Links (popset_taxonomy)</option>
2822 </param>
2823 </when>
2824 </conditional>
2825 </when>
2826 <when value="protein">
2827 <conditional name="db_to">
2828 <param name="db_select_to" type="select" label="To NCBI Database">
2829 <option value="bioproject">BioProject (bioproject)</option>
2830 <option value="biosystems">BioSystems (biosystems)</option>
2831 <option value="biocollections">Biocollections (biocollections)</option>
2832 <option value="cdd">Conserved Domains (cdd)</option>
2833 <option value="gene">Gene (gene)</option>
2834 <option value="genome">Genome (genome)</option>
2835 <option value="homologene">HomoloGene (homologene)</option>
2836 <option value="nuccore">Nucleotide (nuccore)</option>
2837 <option value="nucleotide">Nucleotide (nucleotide)</option>
2838 <option value="omim">OMIM (omim)</option>
2839 <option value="pmc">PMC (pmc)</option>
2840 <option value="popset">PopSet (popset)</option>
2841 <option value="protein">Protein (protein)</option>
2842 <option value="proteinclusters">Protein Clusters (proteinclusters)</option>
2843 <option value="pcassay">PubChem BioAssay (pcassay)</option>
2844 <option value="pccompound">PubChem Compound (pccompound)</option>
2845 <option value="pcsubstance">PubChem Substance (pcsubstance)</option>
2846 <option value="pubmed">PubMed (pubmed)</option>
2847 <option value="snp">SNP (snp)</option>
2848 <option value="structure">Structure (structure)</option>
2849 <option value="taxonomy">Taxonomy (taxonomy)</option>
2850 </param>
2851 <when value="bioproject">
2852 <param name="linkname" type="select" label="Link Name">
2853 <option value="None">All Links</option>
2854 <option value="protein_bioproject">BioProject Links (protein_bioproject)</option>
2855 </param>
2856 </when>
2857 <when value="biosystems">
2858 <param name="linkname" type="select" label="Link Name">
2859 <option value="None">All Links</option>
2860 <option value="protein_biosystems">BioSystem Links (protein_biosystems)</option>
2861 </param>
2862 </when>
2863 <when value="biocollections">
2864 <param name="linkname" type="select" label="Link Name">
2865 <option value="None">All Links</option>
2866 <option value="protein_biocollections">BioCollections (protein_biocollections)</option>
2867 </param>
2868 </when>
2869 <when value="cdd">
2870 <param name="linkname" type="select" label="Link Name">
2871 <option value="None">All Links</option>
2872 <option value="protein_cdd_summary"> (protein_cdd_summary)</option>
2873 <option value="protein_cdd_concise_2">Concise Conserved Domain Links (protein_cdd_concise_2)</option>
2874 <option value="protein_cdd">Conserved Domain Links (protein_cdd)</option>
2875 </param>
2876 </when>
2877 <when value="gene">
2878 <param name="linkname" type="select" label="Link Name">
2879 <option value="None">All Links</option>
2880 <option value="protein_gene">Gene Links (protein_gene)</option>
2881 </param>
2882 </when>
2883 <when value="genome">
2884 <param name="linkname" type="select" label="Link Name">
2885 <option value="None">All Links</option>
2886 <option value="protein_genome">Genome Links (protein_genome)</option>
2887 </param>
2888 </when>
2889 <when value="homologene">
2890 <param name="linkname" type="select" label="Link Name">
2891 <option value="None">All Links</option>
2892 <option value="protein_homologene">HomoloGene Links (protein_homologene)</option>
2893 </param>
2894 </when>
2895 <when value="nuccore">
2896 <param name="linkname" type="select" label="Link Name">
2897 <option value="None">All Links</option>
2898 <option value="protein_nuccore_wgs"> (protein_nuccore_wgs)</option>
2899 <option value="protein_nuccore_mrna">Encoding mRNA (protein_nuccore_mrna)</option>
2900 <option value="protein_nuccore_small_genome">Link to all nucleotide sequences from this genome (protein_nuccore_small_genome)</option>
2901 <option value="protein_nuccore_wp">Link to genomic records (protein_nuccore_wp)</option>
2902 <option value="nuccore_protein_wp">Links to autonomous proteins (nuccore_protein_wp)</option>
2903 <option value="protein_nuccore_mat_peptide">Mature Peptides (protein_nuccore_mat_peptide)</option>
2904 <option value="protein_nuccore">Nucleotide Links (protein_nuccore)</option>
2905 <option value="protein_nuccore_mgc">Nucleotide NIH cDNA clone links (protein_nuccore_mgc)</option>
2906 <option value="protein_nuccore_tsa">TSA master records (protein_nuccore_tsa)</option>
2907 </param>
2908 </when>
2909 <when value="nucleotide">
2910 <param name="linkname" type="select" label="Link Name">
2911 <option value="None">All Links</option>
2912 <option value="protein_nucleotide_mgc_url"> (protein_nucleotide_mgc_url)</option>
2913 </param>
2914 </when>
2915 <when value="omim">
2916 <param name="linkname" type="select" label="Link Name">
2917 <option value="None">All Links</option>
2918 <option value="protein_omim">OMIM Links (protein_omim)</option>
2919 </param>
2920 </when>
2921 <when value="pmc">
2922 <param name="linkname" type="select" label="Link Name">
2923 <option value="None">All Links</option>
2924 <option value="protein_pmc">PMC Links (protein_pmc)</option>
2925 </param>
2926 </when>
2927 <when value="popset">
2928 <param name="linkname" type="select" label="Link Name">
2929 <option value="None">All Links</option>
2930 <option value="protein_popset">PopSet Links (protein_popset)</option>
2931 </param>
2932 </when>
2933 <when value="protein">
2934 <param name="linkname" type="select" label="Link Name">
2935 <option value="None">All Links</option>
2936 <option value="protein_protein_cdart_summary"> (protein_protein_cdart_summary)</option>
2937 <option value="protein_protein_small_genome">Link to all proteins from this genome (protein_protein_small_genome)</option>
2938 <option value="protein_protein_wp2ref">Link to referencing proteins (protein_protein_wp2ref)</option>
2939 <option value="protein_protein_ref2wp">Links from references to autonomous proteins (protein_protein_ref2wp)</option>
2940 <option value="protein_protein_uniprot2refseq">Protein (RefSeq) (protein_protein_uniprot2refseq)</option>
2941 <option value="protein_protein_refseq2uniprot">Protein (UniProtKB) (protein_protein_refseq2uniprot)</option>
2942 </param>
2943 </when>
2944 <when value="proteinclusters">
2945 <param name="linkname" type="select" label="Link Name">
2946 <option value="None">All Links</option>
2947 <option value="protein_proteinclusters">Protein Cluster Links (protein_proteinclusters)</option>
2948 </param>
2949 </when>
2950 <when value="pcassay">
2951 <param name="linkname" type="select" label="Link Name">
2952 <option value="None">All Links</option>
2953 <option value="protein_pcassay_target_pig">BioAssay by Target (Identical Proteins, List) (protein_pcassay_target_pig)</option>
2954 <option value="protein_pcassay_target">BioAssay by Target (List) (protein_pcassay_target)</option>
2955 <option value="protein_pcassay_target_pig_summary">pcassay (protein_pcassay_target_pig_summary)</option>
2956 <option value="protein_pcassay_target_summary">pcassay (protein_pcassay_target_summary)</option>
2957 </param>
2958 </when>
2959 <when value="pccompound">
2960 <param name="linkname" type="select" label="Link Name">
2961 <option value="None">All Links</option>
2962 <option value="protein_pccompound">PubChem Compound Links (protein_pccompound)</option>
2963 </param>
2964 </when>
2965 <when value="pcsubstance">
2966 <param name="linkname" type="select" label="Link Name">
2967 <option value="None">All Links</option>
2968 <option value="protein_pcsubstance">PubChem Substance Links (protein_pcsubstance)</option>
2969 </param>
2970 </when>
2971 <when value="pubmed">
2972 <param name="linkname" type="select" label="Link Name">
2973 <option value="None">All Links</option>
2974 <option value="protein_pubmed_refseq">PubMed (RefSeq) Links (protein_pubmed_refseq)</option>
2975 <option value="protein_pubmed_weighted">PubMed (Weighted) Links (protein_pubmed_weighted)</option>
2976 <option value="protein_pubmed">PubMed Links (protein_pubmed)</option>
2977 </param>
2978 </when>
2979 <when value="snp">
2980 <param name="linkname" type="select" label="Link Name">
2981 <option value="None">All Links</option>
2982 <option value="protein_snp_geneview"> (protein_snp_geneview)</option>
2983 <option value="protein_snp">SNP Links (protein_snp)</option>
2984 </param>
2985 </when>
2986 <when value="structure">
2987 <param name="linkname" type="select" label="Link Name">
2988 <option value="None">All Links</option>
2989 <option value="protein_structure_related"> (protein_structure_related)</option>
2990 <option value="protein_structure">Identical Structures (protein_structure)</option>
2991 <option value="protein_structure_related_list">Related Structures (List) (protein_structure_related_list)</option>
2992 <option value="protein_structure_direct">Structures (protein_structure_direct)</option>
2993 </param>
2994 </when>
2995 <when value="taxonomy">
2996 <param name="linkname" type="select" label="Link Name">
2997 <option value="None">All Links</option>
2998 <option value="protein_taxonomy_wp2species">Links from autonomous proteins to species level organisms (protein_taxonomy_wp2species)</option>
2999 <option value="protein_taxonomy">Taxonomy Links (protein_taxonomy)</option>
3000 </param>
3001 </when>
3002 </conditional>
3003 </when>
3004 <when value="proteinclusters">
3005 <conditional name="db_to">
3006 <param name="db_select_to" type="select" label="To NCBI Database">
3007 <option value="biosystems">BioSystems (biosystems)</option>
3008 <option value="gene">Gene (gene)</option>
3009 <option value="genome">Genome (genome)</option>
3010 <option value="nuccore">Nucleotide (nuccore)</option>
3011 <option value="protein">Protein (protein)</option>
3012 <option value="pubmed">PubMed (pubmed)</option>
3013 <option value="sparcle">Sparcle (sparcle)</option>
3014 <option value="taxonomy">Taxonomy (taxonomy)</option>
3015 </param>
3016 <when value="biosystems">
3017 <param name="linkname" type="select" label="Link Name">
3018 <option value="None">All Links</option>
3019 <option value="proteinclusters_biosystems">BioSystems (proteinclusters_biosystems)</option>
3020 </param>
3021 </when>
3022 <when value="gene">
3023 <param name="linkname" type="select" label="Link Name">
3024 <option value="None">All Links</option>
3025 <option value="proteinclusters_gene">Gene Links (proteinclusters_gene)</option>
3026 </param>
3027 </when>
3028 <when value="genome">
3029 <param name="linkname" type="select" label="Link Name">
3030 <option value="None">All Links</option>
3031 <option value="proteinclusters_genome">Genome Links (proteinclusters_genome)</option>
3032 </param>
3033 </when>
3034 <when value="nuccore">
3035 <param name="linkname" type="select" label="Link Name">
3036 <option value="None">All Links</option>
3037 <option value="proteinclusters_nuccore">Nucleotide Links (proteinclusters_nuccore)</option>
3038 </param>
3039 </when>
3040 <when value="protein">
3041 <param name="linkname" type="select" label="Link Name">
3042 <option value="None">All Links</option>
3043 <option value="proteinclusters_protein">Protein Links (proteinclusters_protein)</option>
3044 </param>
3045 </when>
3046 <when value="pubmed">
3047 <param name="linkname" type="select" label="Link Name">
3048 <option value="None">All Links</option>
3049 <option value="proteinclusters_pubmed_homology">PubMed (By Homology) Links (proteinclusters_pubmed_homology)</option>
3050 <option value="proteinclusters_pubmed_cdd">PubMed (CDD) Links (proteinclusters_pubmed_cdd)</option>
3051 <option value="proteinclusters_pubmed_curated">PubMed (Curated) Links (proteinclusters_pubmed_curated)</option>
3052 <option value="proteinclusters_pubmed_generif">PubMed (GeneRIF) Links (proteinclusters_pubmed_generif)</option>
3053 <option value="proteinclusters_pubmed_refseq">PubMed (RefSeq) Links (proteinclusters_pubmed_refseq)</option>
3054 <option value="proteinclusters_pubmed_structure">PubMed (Structure) Links (proteinclusters_pubmed_structure)</option>
3055 <option value="proteinclusters_pubmed_swissprot">PubMed (SwissProt) Links (proteinclusters_pubmed_swissprot)</option>
3056 <option value="proteinclusters_pubmed">PubMed Links (proteinclusters_pubmed)</option>
3057 </param>
3058 </when>
3059 <when value="sparcle">
3060 <param name="linkname" type="select" label="Link Name">
3061 <option value="None">All Links</option>
3062 <option value="proteinclusters_sparcle">Functional Class (proteinclusters_sparcle)</option>
3063 </param>
3064 </when>
3065 <when value="taxonomy">
3066 <param name="linkname" type="select" label="Link Name">
3067 <option value="None">All Links</option>
3068 <option value="proteinclusters_taxonomy">Taxonomy Links (proteinclusters_taxonomy)</option>
3069 </param>
3070 </when>
3071 </conditional>
3072 </when>
3073 <when value="pcassay">
3074 <conditional name="db_to">
3075 <param name="db_select_to" type="select" label="To NCBI Database">
3076 <option value="books">Books (books)</option>
3077 <option value="cdd">Conserved Domains (cdd)</option>
3078 <option value="gene">Gene (gene)</option>
3079 <option value="nuccore">Nucleotide (nuccore)</option>
3080 <option value="omim">OMIM (omim)</option>
3081 <option value="pmc">PMC (pmc)</option>
3082 <option value="protein">Protein (protein)</option>
3083 <option value="pcassay">PubChem BioAssay (pcassay)</option>
3084 <option value="pccompound">PubChem Compound (pccompound)</option>
3085 <option value="pcsubstance">PubChem Substance (pcsubstance)</option>
3086 <option value="pubmed">PubMed (pubmed)</option>
3087 <option value="sparcle">Sparcle (sparcle)</option>
3088 <option value="structure">Structure (structure)</option>
3089 <option value="taxonomy">Taxonomy (taxonomy)</option>
3090 </param>
3091 <when value="books">
3092 <param name="linkname" type="select" label="Link Name">
3093 <option value="None">All Links</option>
3094 <option value="pcassay_books_probe">MLP Chemical Probe Report (pcassay_books_probe)</option>
3095 </param>
3096 </when>
3097 <when value="cdd">
3098 <param name="linkname" type="select" label="Link Name">
3099 <option value="None">All Links</option>
3100 <option value="pcassay_cdd_protein_target">Conserved Domains (Full) via Protein Target (pcassay_cdd_protein_target)</option>
3101 </param>
3102 </when>
3103 <when value="gene">
3104 <param name="linkname" type="select" label="Link Name">
3105 <option value="None">All Links</option>
3106 <option value="pcassay_gene_target">Gene Target (pcassay_gene_target)</option>
3107 <option value="pcassay_gene_rnai_active">RNAi Target, Active (pcassay_gene_rnai_active)</option>
3108 <option value="pcassay_gene_rnai">RNAi Target, Tested (pcassay_gene_rnai)</option>
3109 </param>
3110 </when>
3111 <when value="nuccore">
3112 <param name="linkname" type="select" label="Link Name">
3113 <option value="None">All Links</option>
3114 <option value="pcassay_nuccore">Nucleotide (pcassay_nuccore)</option>
3115 <option value="pcassay_nuccore_rna_target">Nucleotide RNA Target (pcassay_nuccore_rna_target)</option>
3116 </param>
3117 </when>
3118 <when value="omim">
3119 <param name="linkname" type="select" label="Link Name">
3120 <option value="None">All Links</option>
3121 <option value="pcassay_omim">OMIM (pcassay_omim)</option>
3122 </param>
3123 </when>
3124 <when value="pmc">
3125 <param name="linkname" type="select" label="Link Name">
3126 <option value="None">All Links</option>
3127 <option value="pcassay_pmc">PMC Articles (pcassay_pmc)</option>
3128 </param>
3129 </when>
3130 <when value="protein">
3131 <param name="linkname" type="select" label="Link Name">
3132 <option value="None">All Links</option>
3133 <option value="pcassay_protein_target">Protein Target (pcassay_protein_target)</option>
3134 <option value="pcassay_protein_target_pig">Protein Target, Identical Sequence (pcassay_protein_target_pig)</option>
3135 </param>
3136 </when>
3137 <when value="pcassay">
3138 <param name="linkname" type="select" label="Link Name">
3139 <option value="None">All Links</option>
3140 <option value="pcassay_pcassay_assay_project">Related Assay Projects (pcassay_pcassay_assay_project)</option>
3141 <option value="pcassay_pcassay_activityneighbor_list">Related BioAssays, by Activity Overlap (List) (pcassay_pcassay_activityneighbor_list)</option>
3142 <option value="pcassay_pcassay_common_gene_list">Related BioAssays, by Common Active Gene (List) (pcassay_pcassay_common_gene_list)</option>
3143 <option value="pcassay_pcassay_neighbor_list">Related BioAssays, by Depositor (List) (pcassay_pcassay_neighbor_list)</option>
3144 <option value="pcassay_pcassay_gene_interaction_list">Related BioAssays, by Gene Interaction (List) (pcassay_pcassay_gene_interaction_list)</option>
3145 <option value="pcassay_pcassay_same_assay_project_list">Related BioAssays, by Same Project (List) (pcassay_pcassay_same_assay_project_list)</option>
3146 <option value="pcassay_pcassay_same_publication_list">Related BioAssays, by Same Publication (List) (pcassay_pcassay_same_publication_list)</option>
3147 <option value="pcassay_pcassay_similar_publication_list">Related BioAssays, by Similar Publication (List) (pcassay_pcassay_similar_publication_list)</option>
3148 <option value="pcassay_pcassay_targetneighbor_list">Related BioAssays, by Target Similarity (List) (pcassay_pcassay_targetneighbor_list)</option>
3149 </param>
3150 </when>
3151 <when value="pccompound">
3152 <param name="linkname" type="select" label="Link Name">
3153 <option value="None">All Links</option>
3154 <option value="pcassay_pccompound">Compounds (pcassay_pccompound)</option>
3155 <option value="pcassay_pccompound_active">Compounds, Active (pcassay_pccompound_active)</option>
3156 <option value="pcassay_pccompound_inactive">Compounds, Inactive (pcassay_pccompound_inactive)</option>
3157 <option value="pcassay_pccompound_probe">Compounds, Probe (pcassay_pccompound_probe)</option>
3158 <option value="pcassay_pccompound_activityconcnanomolar">Compounds, activity concentration at/below 1 nM (pcassay_pccompound_activityconcnanomolar)</option>
3159 <option value="pcassay_pccompound_activityconcmicromolar">Compounds, activity concentration at/below 1 uM (pcassay_pccompound_activityconcmicromolar)</option>
3160 </param>
3161 </when>
3162 <when value="pcsubstance">
3163 <param name="linkname" type="select" label="Link Name">
3164 <option value="None">All Links</option>
3165 <option value="pcassay_pcsubstance">Substances (pcassay_pcsubstance)</option>
3166 <option value="pcassay_pcsubstance_active">Substances, Active (pcassay_pcsubstance_active)</option>
3167 <option value="pcassay_pcsubstance_inactive">Substances, Inactive (pcassay_pcsubstance_inactive)</option>
3168 <option value="pcassay_pcsubstance_probe">Substances, Probe (pcassay_pcsubstance_probe)</option>
3169 <option value="pcassay_pcsubstance_activityconcnanomolar">Substances, activity concentration at/below 1 nM (pcassay_pcsubstance_activityconcnanomolar)</option>
3170 <option value="pcassay_pcsubstance_activityconcmicromolar">Substances, activity concentration at/below 1 uM (pcassay_pcsubstance_activityconcmicromolar)</option>
3171 </param>
3172 </when>
3173 <when value="pubmed">
3174 <param name="linkname" type="select" label="Link Name">
3175 <option value="None">All Links</option>
3176 <option value="pcassay_pubmed">PubMed Citations (pcassay_pubmed)</option>
3177 </param>
3178 </when>
3179 <when value="sparcle">
3180 <param name="linkname" type="select" label="Link Name">
3181 <option value="None">All Links</option>
3182 <option value="pcassay_sparcle_target">Target Functional Class (pcassay_sparcle_target)</option>
3183 </param>
3184 </when>
3185 <when value="structure">
3186 <param name="linkname" type="select" label="Link Name">
3187 <option value="None">All Links</option>
3188 <option value="pcassay_structure">Protein Structures (pcassay_structure)</option>
3189 </param>
3190 </when>
3191 <when value="taxonomy">
3192 <param name="linkname" type="select" label="Link Name">
3193 <option value="None">All Links</option>
3194 <option value="pcassay_taxonomy">Taxonomy (pcassay_taxonomy)</option>
3195 </param>
3196 </when>
3197 </conditional>
3198 </when>
3199 <when value="pccompound">
3200 <conditional name="db_to">
3201 <param name="db_select_to" type="select" label="To NCBI Database">
3202 <option value="biosystems">BioSystems (biosystems)</option>
3203 <option value="gene">Gene (gene)</option>
3204 <option value="mesh">MeSH (mesh)</option>
3205 <option value="nuccore">Nucleotide (nuccore)</option>
3206 <option value="omim">OMIM (omim)</option>
3207 <option value="pmc">PMC (pmc)</option>
3208 <option value="protein">Protein (protein)</option>
3209 <option value="pcassay">PubChem BioAssay (pcassay)</option>
3210 <option value="pccompound">PubChem Compound (pccompound)</option>
3211 <option value="pcsubstance">PubChem Substance (pcsubstance)</option>
3212 <option value="pubmed">PubMed (pubmed)</option>
3213 <option value="structure">Structure (structure)</option>
3214 <option value="taxonomy">Taxonomy (taxonomy)</option>
3215 </param>
3216 <when value="biosystems">
3217 <param name="linkname" type="select" label="Link Name">
3218 <option value="None">All Links</option>
3219 <option value="pccompound_biosystems">BioSystems (pccompound_biosystems)</option>
3220 </param>
3221 </when>
3222 <when value="gene">
3223 <param name="linkname" type="select" label="Link Name">
3224 <option value="None">All Links</option>
3225 <option value="pccompound_gene">Gene (pccompound_gene)</option>
3226 </param>
3227 </when>
3228 <when value="mesh">
3229 <param name="linkname" type="select" label="Link Name">
3230 <option value="None">All Links</option>
3231 <option value="pccompound_mesh">MeSH Keyword (pccompound_mesh)</option>
3232 </param>
3233 </when>
3234 <when value="nuccore">
3235 <param name="linkname" type="select" label="Link Name">
3236 <option value="None">All Links</option>
3237 <option value="pccompound_nuccore">Nucleotide Sequences (pccompound_nuccore)</option>
3238 </param>
3239 </when>
3240 <when value="omim">
3241 <param name="linkname" type="select" label="Link Name">
3242 <option value="None">All Links</option>
3243 <option value="pccompound_omim">OMIM (pccompound_omim)</option>
3244 </param>
3245 </when>
3246 <when value="pmc">
3247 <param name="linkname" type="select" label="Link Name">
3248 <option value="None">All Links</option>
3249 <option value="pccompound_pmc">PMC Articles (pccompound_pmc)</option>
3250 </param>
3251 </when>
3252 <when value="protein">
3253 <param name="linkname" type="select" label="Link Name">
3254 <option value="None">All Links</option>
3255 <option value="pccompound_protein">Protein Sequences (pccompound_protein)</option>
3256 </param>
3257 </when>
3258 <when value="pcassay">
3259 <param name="linkname" type="select" label="Link Name">
3260 <option value="None">All Links</option>
3261 <option value="pccompound_pcassay">BioAssays (pccompound_pcassay)</option>
3262 <option value="pccompound_pcassay_active">BioAssays, Active (pccompound_pcassay_active)</option>
3263 <option value="pccompound_pcassay_inactive">BioAssays, Inactive (pccompound_pcassay_inactive)</option>
3264 <option value="pccompound_pcassay_probe">BioAssays, Probe (pccompound_pcassay_probe)</option>
3265 <option value="pccompound_pcassay_activityconcnanomolar">BioAssays, activity concentration at/below 1 nM (pccompound_pcassay_activityconcnanomolar)</option>
3266 <option value="pccompound_pcassay_activityconcmicromolar">BioAssays, activity concentration at/below 1 uM (pccompound_pcassay_activityconcmicromolar)</option>
3267 </param>
3268 </when>
3269 <when value="pccompound">
3270 <param name="linkname" type="select" label="Link Name">
3271 <option value="None">All Links</option>
3272 <option value="pccompound_pccompound_mixture">Mixture/Component Compounds (pccompound_pccompound_mixture)</option>
3273 <option value="pccompound_pccompound_parent">Parent Compound (pccompound_pccompound_parent)</option>
3274 <option value="pccompound_pccompound_parent_pulldown">Same Parent (pccompound_pccompound_parent_pulldown)</option>
3275 <option value="pccompound_pccompound_parent_tautomer_pulldown">Same Parent, Any Tautomer (pccompound_pccompound_parent_tautomer_pulldown)</option>
3276 <option value="pccompound_pccompound_parent_connectivity_pulldown">Same Parent, Connectivity (pccompound_pccompound_parent_connectivity_pulldown)</option>
3277 <option value="pccompound_pccompound_parent_isotopes_pulldown">Same Parent, Isotopes (pccompound_pccompound_parent_isotopes_pulldown)</option>
3278 <option value="pccompound_pccompound_parent_stereo_pulldown">Same Parent, Stereochemistry (pccompound_pccompound_parent_stereo_pulldown)</option>
3279 <option value="pccompound_pccompound_sameanytautomer_pulldown">Same, Any Tautomer (pccompound_pccompound_sameanytautomer_pulldown)</option>
3280 <option value="pccompound_pccompound_sameconnectivity_pulldown">Same, Connectivity (pccompound_pccompound_sameconnectivity_pulldown)</option>
3281 <option value="pccompound_pccompound_sameisotopic_pulldown">Same, Isotopes (pccompound_pccompound_sameisotopic_pulldown)</option>
3282 <option value="pccompound_pccompound_samestereochem_pulldown">Same, Stereochemistry (pccompound_pccompound_samestereochem_pulldown)</option>
3283 <option value="pccompound_pccompound">Similar Compounds (pccompound_pccompound)</option>
3284 <option value="pccompound_pccompound_3d">Similar Conformers (pccompound_pccompound_3d)</option>
3285 </param>
3286 </when>
3287 <when value="pcsubstance">
3288 <param name="linkname" type="select" label="Link Name">
3289 <option value="None">All Links</option>
3290 <option value="pccompound_pcsubstance">PubChem Mixture Substances (pccompound_pcsubstance)</option>
3291 <option value="pccompound_pcsubstance_same">PubChem Same Substances (pccompound_pcsubstance_same)</option>
3292 </param>
3293 </when>
3294 <when value="pubmed">
3295 <param name="linkname" type="select" label="Link Name">
3296 <option value="None">All Links</option>
3297 <option value="pccompound_pubmed_mesh">PubMed (MeSH Keyword) (pccompound_pubmed_mesh)</option>
3298 <option value="pccompound_pubmed_publisher">PubMed (Publisher) (pccompound_pubmed_publisher)</option>
3299 <option value="pccompound_pubmed">PubMed Citations (pccompound_pubmed)</option>
3300 </param>
3301 </when>
3302 <when value="structure">
3303 <param name="linkname" type="select" label="Link Name">
3304 <option value="None">All Links</option>
3305 <option value="pccompound_structure">Protein Structures (pccompound_structure)</option>
3306 </param>
3307 </when>
3308 <when value="taxonomy">
3309 <param name="linkname" type="select" label="Link Name">
3310 <option value="None">All Links</option>
3311 <option value="pccompound_taxonomy">Taxonomy (pccompound_taxonomy)</option>
3312 </param>
3313 </when>
3314 </conditional>
3315 </when>
3316 <when value="pcsubstance">
3317 <conditional name="db_to">
3318 <param name="db_select_to" type="select" label="To NCBI Database">
3319 <option value="biosystems">BioSystems (biosystems)</option>
3320 <option value="books">Books (books)</option>
3321 <option value="gene">Gene (gene)</option>
3322 <option value="nuccore">Nucleotide (nuccore)</option>
3323 <option value="omim">OMIM (omim)</option>
3324 <option value="pmc">PMC (pmc)</option>
3325 <option value="protein">Protein (protein)</option>
3326 <option value="pcassay">PubChem BioAssay (pcassay)</option>
3327 <option value="pccompound">PubChem Compound (pccompound)</option>
3328 <option value="pubmed">PubMed (pubmed)</option>
3329 <option value="structure">Structure (structure)</option>
3330 <option value="taxonomy">Taxonomy (taxonomy)</option>
3331 </param>
3332 <when value="biosystems">
3333 <param name="linkname" type="select" label="Link Name">
3334 <option value="None">All Links</option>
3335 <option value="pcsubstance_biosystems">BioSystems (pcsubstance_biosystems)</option>
3336 </param>
3337 </when>
3338 <when value="books">
3339 <param name="linkname" type="select" label="Link Name">
3340 <option value="None">All Links</option>
3341 <option value="pcsubstance_books">Books (pcsubstance_books)</option>
3342 </param>
3343 </when>
3344 <when value="gene">
3345 <param name="linkname" type="select" label="Link Name">
3346 <option value="None">All Links</option>
3347 <option value="pcsubstance_gene">Gene (pcsubstance_gene)</option>
3348 </param>
3349 </when>
3350 <when value="nuccore">
3351 <param name="linkname" type="select" label="Link Name">
3352 <option value="None">All Links</option>
3353 <option value="pcsubstance_nuccore">Nucleotide Sequences (pcsubstance_nuccore)</option>
3354 </param>
3355 </when>
3356 <when value="omim">
3357 <param name="linkname" type="select" label="Link Name">
3358 <option value="None">All Links</option>
3359 <option value="pcsubstance_omim">OMIM (pcsubstance_omim)</option>
3360 </param>
3361 </when>
3362 <when value="pmc">
3363 <param name="linkname" type="select" label="Link Name">
3364 <option value="None">All Links</option>
3365 <option value="pcsubstance_pmc">PMC Articles (pcsubstance_pmc)</option>
3366 </param>
3367 </when>
3368 <when value="protein">
3369 <param name="linkname" type="select" label="Link Name">
3370 <option value="None">All Links</option>
3371 <option value="pcsubstance_protein">Protein Sequences (pcsubstance_protein)</option>
3372 </param>
3373 </when>
3374 <when value="pcassay">
3375 <param name="linkname" type="select" label="Link Name">
3376 <option value="None">All Links</option>
3377 <option value="pcsubstance_pcassay">BioAssays (pcsubstance_pcassay)</option>
3378 <option value="pcsubstance_pcassay_active">BioAssays, Active (pcsubstance_pcassay_active)</option>
3379 <option value="pcsubstance_pcassay_inactive">BioAssays, Inactive (pcsubstance_pcassay_inactive)</option>
3380 <option value="pcsubstance_pcassay_probe">BioAssays, Probe (pcsubstance_pcassay_probe)</option>
3381 <option value="pcsubstance_pcassay_activityconcnanomolar">BioAssays, activity concentration at/below 1 nM (pcsubstance_pcassay_activityconcnanomolar)</option>
3382 <option value="pcsubstance_pcassay_activityconcmicromolar">BioAssays, activity concentration at/below 1 uM (pcsubstance_pcassay_activityconcmicromolar)</option>
3383 </param>
3384 </when>
3385 <when value="pccompound">
3386 <param name="linkname" type="select" label="Link Name">
3387 <option value="None">All Links</option>
3388 <option value="pcsubstance_pccompound">PubChem Component Compounds (pcsubstance_pccompound)</option>
3389 <option value="pcsubstance_pccompound_same">PubChem Same Compounds (pcsubstance_pccompound_same)</option>
3390 </param>
3391 </when>
3392 <when value="pubmed">
3393 <param name="linkname" type="select" label="Link Name">
3394 <option value="None">All Links</option>
3395 <option value="pcsubstance_pubmed_bookrecords">&quot;Bookshelf (from PubChem Substance)&quot; (pcsubstance_pubmed_bookrecords)</option>
3396 <option value="pcsubstance_pubmed_publisher">PubMed (Publisher) (pcsubstance_pubmed_publisher)</option>
3397 <option value="pcsubstance_pubmed">PubMed Citations (pcsubstance_pubmed)</option>
3398 </param>
3399 </when>
3400 <when value="structure">
3401 <param name="linkname" type="select" label="Link Name">
3402 <option value="None">All Links</option>
3403 <option value="pcsubstance_structure">Protein Structures (pcsubstance_structure)</option>
3404 </param>
3405 </when>
3406 <when value="taxonomy">
3407 <param name="linkname" type="select" label="Link Name">
3408 <option value="None">All Links</option>
3409 <option value="pcsubstance_taxonomy">Taxonomy (pcsubstance_taxonomy)</option>
3410 </param>
3411 </when>
3412 </conditional>
3413 </when>
3414 <when value="pubmed">
3415 <conditional name="db_to">
3416 <param name="db_select_to" type="select" label="To NCBI Database">
3417 <option value="assembly">Assembly (assembly)</option>
3418 <option value="bioproject">BioProject (bioproject)</option>
3419 <option value="biosample">BioSample (biosample)</option>
3420 <option value="biosystems">BioSystems (biosystems)</option>
3421 <option value="books">Books (books)</option>
3422 <option value="clinvar">ClinVar (clinvar)</option>
3423 <option value="cdd">Conserved Domains (cdd)</option>
3424 <option value="gds">GEO DataSets (gds)</option>
3425 <option value="geoprofiles">GEO Profiles (geoprofiles)</option>
3426 <option value="gene">Gene (gene)</option>
3427 <option value="genome">Genome (genome)</option>
3428 <option value="homologene">HomoloGene (homologene)</option>
3429 <option value="medgen">MedGen (medgen)</option>
3430 <option value="nuccore">Nucleotide (nuccore)</option>
3431 <option value="omim">OMIM (omim)</option>
3432 <option value="pmc">PMC (pmc)</option>
3433 <option value="popset">PopSet (popset)</option>
3434 <option value="protein">Protein (protein)</option>
3435 <option value="proteinclusters">Protein Clusters (proteinclusters)</option>
3436 <option value="pcassay">PubChem BioAssay (pcassay)</option>
3437 <option value="pccompound">PubChem Compound (pccompound)</option>
3438 <option value="pcsubstance">PubChem Substance (pcsubstance)</option>
3439 <option value="pubmed">PubMed (pubmed)</option>
3440 <option value="snp">SNP (snp)</option>
3441 <option value="sra">SRA (sra)</option>
3442 <option value="structure">Structure (structure)</option>
3443 <option value="taxonomy">Taxonomy (taxonomy)</option>
3444 <option value="gap">dbGaP (gap)</option>
3445 <option value="dbvar">dbVar (dbvar)</option>
3446 </param>
3447 <when value="assembly">
3448 <param name="linkname" type="select" label="Link Name">
3449 <option value="None">All Links</option>
3450 <option value="pubmed_assembly">Assembly (pubmed_assembly)</option>
3451 </param>
3452 </when>
3453 <when value="bioproject">
3454 <param name="linkname" type="select" label="Link Name">
3455 <option value="None">All Links</option>
3456 <option value="pubmed_bioproject">Project Links (pubmed_bioproject)</option>
3457 </param>
3458 </when>
3459 <when value="biosample">
3460 <param name="linkname" type="select" label="Link Name">
3461 <option value="None">All Links</option>
3462 <option value="pubmed_biosample">BioSample Links (pubmed_biosample)</option>
3463 </param>
3464 </when>
3465 <when value="biosystems">
3466 <param name="linkname" type="select" label="Link Name">
3467 <option value="None">All Links</option>
3468 <option value="pubmed_biosystems">BioSystem Links (pubmed_biosystems)</option>
3469 </param>
3470 </when>
3471 <when value="books">
3472 <param name="linkname" type="select" label="Link Name">
3473 <option value="None">All Links</option>
3474 <option value="pubmed_books_refs">Cited in Books (pubmed_books_refs)</option>
3475 </param>
3476 </when>
3477 <when value="clinvar">
3478 <param name="linkname" type="select" label="Link Name">
3479 <option value="None">All Links</option>
3480 <option value="pubmed_clinvar_calculated">ClinVar (calculated) (pubmed_clinvar_calculated)</option>
3481 <option value="pubmed_clinvar">ClinVar (pubmed_clinvar)</option>
3482 </param>
3483 </when>
3484 <when value="cdd">
3485 <param name="linkname" type="select" label="Link Name">
3486 <option value="None">All Links</option>
3487 <option value="pubmed_cdd">Conserved Domain Links (pubmed_cdd)</option>
3488 </param>
3489 </when>
3490 <when value="gds">
3491 <param name="linkname" type="select" label="Link Name">
3492 <option value="None">All Links</option>
3493 <option value="pubmed_gds">GEO DataSet Links (pubmed_gds)</option>
3494 </param>
3495 </when>
3496 <when value="geoprofiles">
3497 <param name="linkname" type="select" label="Link Name">
3498 <option value="None">All Links</option>
3499 <option value="pubmed_geoprofiles">GEO Profile Links (pubmed_geoprofiles)</option>
3500 </param>
3501 </when>
3502 <when value="gene">
3503 <param name="linkname" type="select" label="Link Name">
3504 <option value="None">All Links</option>
3505 <option value="pubmed_gene_rif">Gene (GeneRIF) Links (pubmed_gene_rif)</option>
3506 <option value="pubmed_gene_citedinomim">Gene (OMIM) Links (pubmed_gene_citedinomim)</option>
3507 <option value="pubmed_gene_bookrecords">Gene (from Bookshelf) (pubmed_gene_bookrecords)</option>
3508 <option value="pubmed_gene_pmc_nucleotide">Gene (nucleotide/PMC) (pubmed_gene_pmc_nucleotide)</option>
3509 <option value="pubmed_gene">Gene Links (pubmed_gene)</option>
3510 </param>
3511 </when>
3512 <when value="genome">
3513 <param name="linkname" type="select" label="Link Name">
3514 <option value="None">All Links</option>
3515 <option value="pubmed_genome">Genome Links (pubmed_genome)</option>
3516 </param>
3517 </when>
3518 <when value="homologene">
3519 <param name="linkname" type="select" label="Link Name">
3520 <option value="None">All Links</option>
3521 <option value="pubmed_homologene">HomoloGene Links (pubmed_homologene)</option>
3522 </param>
3523 </when>
3524 <when value="medgen">
3525 <param name="linkname" type="select" label="Link Name">
3526 <option value="None">All Links</option>
3527 <option value="pubmed_medgen_bookshelf_cited">MedGen (Bookshelf cited) (pubmed_medgen_bookshelf_cited)</option>
3528 <option value="pubmed_medgen_genereviews">MedGen (GeneReviews) (pubmed_medgen_genereviews)</option>
3529 <option value="pubmed_medgen_omim">MedGen (OMIM) (pubmed_medgen_omim)</option>
3530 <option value="pubmed_medgen">MedGen (pubmed_medgen)</option>
3531 </param>
3532 </when>
3533 <when value="nuccore">
3534 <param name="linkname" type="select" label="Link Name">
3535 <option value="None">All Links</option>
3536 <option value="pubmed_nuccore_refseq">Nucleotide (RefSeq) Links (pubmed_nuccore_refseq)</option>
3537 <option value="pubmed_nuccore_weighted">Nucleotide (Weighted) Links (pubmed_nuccore_weighted)</option>
3538 <option value="pubmed_nuccore">Nucleotide Links (pubmed_nuccore)</option>
3539 </param>
3540 </when>
3541 <when value="omim">
3542 <param name="linkname" type="select" label="Link Name">
3543 <option value="None">All Links</option>
3544 <option value="pubmed_omim_calculated">OMIM (calculated) Links (pubmed_omim_calculated)</option>
3545 <option value="pubmed_omim_cited">OMIM (cited) Links (pubmed_omim_cited)</option>
3546 <option value="pubmed_omim_bookrecords">OMIM (from Bookshelf) (pubmed_omim_bookrecords)</option>
3547 </param>
3548 </when>
3549 <when value="pmc">
3550 <param name="linkname" type="select" label="Link Name">
3551 <option value="None">All Links</option>
3552 <option value="pubmed_pmc_embargo"> (pubmed_pmc_embargo)</option>
3553 <option value="pubmed_pmc_local"> (pubmed_pmc_local)</option>
3554 <option value="pubmed_pmc_refs">Cited in PMC (pubmed_pmc_refs)</option>
3555 <option value="pubmed_pmc">PMC Links (pubmed_pmc)</option>
3556 <option value="pubmed_pmc_bookrecords">References in PMC for this Bookshelf citation (pubmed_pmc_bookrecords)</option>
3557 </param>
3558 </when>
3559 <when value="popset">
3560 <param name="linkname" type="select" label="Link Name">
3561 <option value="None">All Links</option>
3562 <option value="pubmed_popset">PopSet Links (pubmed_popset)</option>
3563 </param>
3564 </when>
3565 <when value="protein">
3566 <param name="linkname" type="select" label="Link Name">
3567 <option value="None">All Links</option>
3568 <option value="pubmed_protein_refseq">Protein (RefSeq) Links (pubmed_protein_refseq)</option>
3569 <option value="pubmed_protein_weighted">Protein (Weighted) Links (pubmed_protein_weighted)</option>
3570 <option value="pubmed_protein">Protein Links (pubmed_protein)</option>
3571 </param>
3572 </when>
3573 <when value="proteinclusters">
3574 <param name="linkname" type="select" label="Link Name">
3575 <option value="None">All Links</option>
3576 <option value="pubmed_proteinclusters">Protein Cluster Links (pubmed_proteinclusters)</option>
3577 </param>
3578 </when>
3579 <when value="pcassay">
3580 <param name="linkname" type="select" label="Link Name">
3581 <option value="None">All Links</option>
3582 <option value="pubmed_pcassay">PubChem BioAssay (pubmed_pcassay)</option>
3583 </param>
3584 </when>
3585 <when value="pccompound">
3586 <param name="linkname" type="select" label="Link Name">
3587 <option value="None">All Links</option>
3588 <option value="pubmed_pccompound_mesh">PubChem Compound (MeSH Keyword) (pubmed_pccompound_mesh)</option>
3589 <option value="pubmed_pccompound_publisher">PubChem Compound (Publisher) (pubmed_pccompound_publisher)</option>
3590 <option value="pubmed_pccompound">PubChem Compound (pubmed_pccompound)</option>
3591 </param>
3592 </when>
3593 <when value="pcsubstance">
3594 <param name="linkname" type="select" label="Link Name">
3595 <option value="None">All Links</option>
3596 <option value="pubmed_pcsubstance_publisher">PubChem Substance (Publisher) (pubmed_pcsubstance_publisher)</option>
3597 <option value="pubmed_pcsubstance_bookrecords">PubChem Substance (from Bookshelf) (pubmed_pcsubstance_bookrecords)</option>
3598 <option value="pubmed_pcsubstance">PubChem Substance Links (pubmed_pcsubstance)</option>
3599 </param>
3600 </when>
3601 <when value="pubmed">
3602 <param name="linkname" type="select" label="Link Name">
3603 <option value="None">All Links</option>
3604 <option value="pubmed_pubmed_alsoviewed">Articles frequently viewed together (pubmed_pubmed_alsoviewed)</option>
3605 <option value="pubmed_pubmed_refs">References for PMC Articles (pubmed_pubmed_refs)</option>
3606 <option value="pubmed_pubmed_bookrecords">References for this Bookshelf citation (pubmed_pubmed_bookrecords)</option>
3607 <option value="pubmed_pubmed">Similar articles (pubmed_pubmed)</option>
3608 </param>
3609 </when>
3610 <when value="snp">
3611 <param name="linkname" type="select" label="Link Name">
3612 <option value="None">All Links</option>
3613 <option value="pubmed_snp_cited">SNP (Cited) (pubmed_snp_cited)</option>
3614 <option value="pubmed_snp">SNP Links (pubmed_snp)</option>
3615 </param>
3616 </when>
3617 <when value="sra">
3618 <param name="linkname" type="select" label="Link Name">
3619 <option value="None">All Links</option>
3620 <option value="pubmed_sra">SRA Links (pubmed_sra)</option>
3621 </param>
3622 </when>
3623 <when value="structure">
3624 <param name="linkname" type="select" label="Link Name">
3625 <option value="None">All Links</option>
3626 <option value="pubmed_structure">Structure Links (pubmed_structure)</option>
3627 </param>
3628 </when>
3629 <when value="taxonomy">
3630 <param name="linkname" type="select" label="Link Name">
3631 <option value="None">All Links</option>
3632 <option value="pubmed_taxonomy_entrez">Taxonomy via GenBank (pubmed_taxonomy_entrez)</option>
3633 </param>
3634 </when>
3635 <when value="gap">
3636 <param name="linkname" type="select" label="Link Name">
3637 <option value="None">All Links</option>
3638 <option value="pubmed_gap">dbGaP Links (pubmed_gap)</option>
3639 </param>
3640 </when>
3641 <when value="dbvar">
3642 <param name="linkname" type="select" label="Link Name">
3643 <option value="None">All Links</option>
3644 <option value="pubmed_dbvar">dbVar (pubmed_dbvar)</option>
3645 </param>
3646 </when>
3647 </conditional>
3648 </when>
3649 <when value="snp">
3650 <conditional name="db_to">
3651 <param name="db_select_to" type="select" label="To NCBI Database">
3652 <option value="bioproject">BioProject (bioproject)</option>
3653 <option value="biosample">BioSample (biosample)</option>
3654 <option value="clinvar">ClinVar (clinvar)</option>
3655 <option value="gene">Gene (gene)</option>
3656 <option value="nuccore">Nucleotide (nuccore)</option>
3657 <option value="pmc">PMC (pmc)</option>
3658 <option value="protein">Protein (protein)</option>
3659 <option value="pubmed">PubMed (pubmed)</option>
3660 <option value="snp">SNP (snp)</option>
3661 <option value="sparcle">Sparcle (sparcle)</option>
3662 <option value="structure">Structure (structure)</option>
3663 <option value="taxonomy">Taxonomy (taxonomy)</option>
3664 <option value="gap">dbGaP (gap)</option>
3665 <option value="dbvar">dbVar (dbvar)</option>
3666 </param>
3667 <when value="bioproject">
3668 <param name="linkname" type="select" label="Link Name">
3669 <option value="None">All Links</option>
3670 <option value="snp_bioproject">BioProject Links (snp_bioproject)</option>
3671 </param>
3672 </when>
3673 <when value="biosample">
3674 <param name="linkname" type="select" label="Link Name">
3675 <option value="None">All Links</option>
3676 <option value="snp_biosample">BioSample Links (snp_biosample)</option>
3677 </param>
3678 </when>
3679 <when value="clinvar">
3680 <param name="linkname" type="select" label="Link Name">
3681 <option value="None">All Links</option>
3682 <option value="snp_clinvar">ClinVar (snp_clinvar)</option>
3683 </param>
3684 </when>
3685 <when value="gene">
3686 <param name="linkname" type="select" label="Link Name">
3687 <option value="None">All Links</option>
3688 <option value="snp_gene">Gene Links (snp_gene)</option>
3689 </param>
3690 </when>
3691 <when value="nuccore">
3692 <param name="linkname" type="select" label="Link Name">
3693 <option value="None">All Links</option>
3694 <option value="snp_nuccore">Nucleotide Links (snp_nuccore)</option>
3695 </param>
3696 </when>
3697 <when value="pmc">
3698 <param name="linkname" type="select" label="Link Name">
3699 <option value="None">All Links</option>
3700 <option value="snp_pmc">PMC Links (snp_pmc)</option>
3701 </param>
3702 </when>
3703 <when value="protein">
3704 <param name="linkname" type="select" label="Link Name">
3705 <option value="None">All Links</option>
3706 <option value="snp_protein">Protein Links (snp_protein)</option>
3707 </param>
3708 </when>
3709 <when value="pubmed">
3710 <param name="linkname" type="select" label="Link Name">
3711 <option value="None">All Links</option>
3712 <option value="snp_pubmed">PubMed Links (snp_pubmed)</option>
3713 <option value="snp_pubmed_cited">Pubmed (SNP Cited) (snp_pubmed_cited)</option>
3714 </param>
3715 </when>
3716 <when value="snp">
3717 <param name="linkname" type="select" label="Link Name">
3718 <option value="None">All Links</option>
3719 <option value="snp_snp_genegenotype">Gene Genotype Links (snp_snp_genegenotype)</option>
3720 <option value="snp_snp_somatic">Somatic SNPs (snp_snp_somatic)</option>
3721 </param>
3722 </when>
3723 <when value="sparcle">
3724 <param name="linkname" type="select" label="Link Name">
3725 <option value="None">All Links</option>
3726 <option value="snp_sparcle">Functional Class (snp_sparcle)</option>
3727 </param>
3728 </when>
3729 <when value="structure">
3730 <param name="linkname" type="select" label="Link Name">
3731 <option value="None">All Links</option>
3732 <option value="snp_structure">Structure Links (snp_structure)</option>
3733 </param>
3734 </when>
3735 <when value="taxonomy">
3736 <param name="linkname" type="select" label="Link Name">
3737 <option value="None">All Links</option>
3738 <option value="snp_taxonomy">Taxonomy Links (snp_taxonomy)</option>
3739 </param>
3740 </when>
3741 <when value="gap">
3742 <param name="linkname" type="select" label="Link Name">
3743 <option value="None">All Links</option>
3744 <option value="snp_gap">GAP Links (snp_gap)</option>
3745 </param>
3746 </when>
3747 <when value="dbvar">
3748 <param name="linkname" type="select" label="Link Name">
3749 <option value="None">All Links</option>
3750 <option value="snp_dbvar">dbVar (snp_dbvar)</option>
3751 </param>
3752 </when>
3753 </conditional>
3754 </when>
3755 <when value="sra">
3756 <conditional name="db_to">
3757 <param name="db_select_to" type="select" label="To NCBI Database">
3758 <option value="assembly">Assembly (assembly)</option>
3759 <option value="bioproject">BioProject (bioproject)</option>
3760 <option value="biosample">BioSample (biosample)</option>
3761 <option value="gds">GEO DataSets (gds)</option>
3762 <option value="genome">Genome (genome)</option>
3763 <option value="nuccore">Nucleotide (nuccore)</option>
3764 <option value="omim">OMIM (omim)</option>
3765 <option value="pmc">PMC (pmc)</option>
3766 <option value="pubmed">PubMed (pubmed)</option>
3767 <option value="taxonomy">Taxonomy (taxonomy)</option>
3768 <option value="gap">dbGaP (gap)</option>
3769 </param>
3770 <when value="assembly">
3771 <param name="linkname" type="select" label="Link Name">
3772 <option value="None">All Links</option>
3773 <option value="sra_assembly">Assembly Links (sra_assembly)</option>
3774 </param>
3775 </when>
3776 <when value="bioproject">
3777 <param name="linkname" type="select" label="Link Name">
3778 <option value="None">All Links</option>
3779 <option value="sra_bioproject">BioProject Links (sra_bioproject)</option>
3780 <option value="sra_bioproject_sp">bioproject (sra_bioproject_sp)</option>
3781 </param>
3782 </when>
3783 <when value="biosample">
3784 <param name="linkname" type="select" label="Link Name">
3785 <option value="None">All Links</option>
3786 <option value="sra_biosample">BioSample Links (sra_biosample)</option>
3787 </param>
3788 </when>
3789 <when value="gds">
3790 <param name="linkname" type="select" label="Link Name">
3791 <option value="None">All Links</option>
3792 <option value="sra_gds">GEO DataSet Links (sra_gds)</option>
3793 </param>
3794 </when>
3795 <when value="genome">
3796 <param name="linkname" type="select" label="Link Name">
3797 <option value="None">All Links</option>
3798 <option value="sra_genome">genome (sra_genome)</option>
3799 </param>
3800 </when>
3801 <when value="nuccore">
3802 <param name="linkname" type="select" label="Link Name">
3803 <option value="None">All Links</option>
3804 <option value="sra_nuccore">Nucleotide Links (sra_nuccore)</option>
3805 <option value="sra_nuccore_wgs">WGS links (sra_nuccore_wgs)</option>
3806 </param>
3807 </when>
3808 <when value="omim">
3809 <param name="linkname" type="select" label="Link Name">
3810 <option value="None">All Links</option>
3811 <option value="sra_omim">Omim links (sra_omim)</option>
3812 </param>
3813 </when>
3814 <when value="pmc">
3815 <param name="linkname" type="select" label="Link Name">
3816 <option value="None">All Links</option>
3817 <option value="sra_pmc">PMC (sra_pmc)</option>
3818 </param>
3819 </when>
3820 <when value="pubmed">
3821 <param name="linkname" type="select" label="Link Name">
3822 <option value="None">All Links</option>
3823 <option value="sra_pubmed">PubMed Links (sra_pubmed)</option>
3824 </param>
3825 </when>
3826 <when value="taxonomy">
3827 <param name="linkname" type="select" label="Link Name">
3828 <option value="None">All Links</option>
3829 <option value="sra_taxonomy">Taxonomy Links (sra_taxonomy)</option>
3830 </param>
3831 </when>
3832 <when value="gap">
3833 <param name="linkname" type="select" label="Link Name">
3834 <option value="None">All Links</option>
3835 <option value="sra_gap_all">dbGaP Links (sra_gap_all)</option>
3836 </param>
3837 </when>
3838 </conditional>
3839 </when>
3840 <when value="seqannot">
3841 <conditional name="db_to">
3842 <param name="db_select_to" type="select" label="To NCBI Database">
3843 <option value="bioproject">BioProject (bioproject)</option>
3844 <option value="nuccore">Nucleotide (nuccore)</option>
3845 </param>
3846 <when value="bioproject">
3847 <param name="linkname" type="select" label="Link Name">
3848 <option value="None">All Links</option>
3849 <option value="seqannot_bioproject">BioProject links (seqannot_bioproject)</option>
3850 </param>
3851 </when>
3852 <when value="nuccore">
3853 <param name="linkname" type="select" label="Link Name">
3854 <option value="None">All Links</option>
3855 <option value="seqannot_nuccore">NucCore links (seqannot_nuccore)</option>
3856 </param>
3857 </when>
3858 </conditional>
3859 </when>
3860 <when value="sparcle">
3861 <conditional name="db_to">
3862 <param name="db_select_to" type="select" label="To NCBI Database">
3863 <option value="biosystems">BioSystems (biosystems)</option>
3864 <option value="clinvar">ClinVar (clinvar)</option>
3865 <option value="cdd">Conserved Domains (cdd)</option>
3866 <option value="geoprofiles">GEO Profiles (geoprofiles)</option>
3867 <option value="gtr">GTR (gtr)</option>
3868 <option value="gene">Gene (gene)</option>
3869 <option value="homologene">HomoloGene (homologene)</option>
3870 <option value="medgen">MedGen (medgen)</option>
3871 <option value="nuccore">Nucleotide (nuccore)</option>
3872 <option value="omim">OMIM (omim)</option>
3873 <option value="protein">Protein (protein)</option>
3874 <option value="proteinclusters">Protein Clusters (proteinclusters)</option>
3875 <option value="pcassay">PubChem BioAssay (pcassay)</option>
3876 <option value="snp">SNP (snp)</option>
3877 <option value="structure">Structure (structure)</option>
3878 <option value="dbvar">dbVar (dbvar)</option>
3879 </param>
3880 <when value="biosystems">
3881 <param name="linkname" type="select" label="Link Name">
3882 <option value="None">All Links</option>
3883 <option value="sparcle_biosystems">Pathways (sparcle_biosystems)</option>
3884 </param>
3885 </when>
3886 <when value="clinvar">
3887 <param name="linkname" type="select" label="Link Name">
3888 <option value="None">All Links</option>
3889 <option value="sparcle_clinvar">Clinical Variants (sparcle_clinvar)</option>
3890 </param>
3891 </when>
3892 <when value="cdd">
3893 <param name="linkname" type="select" label="Link Name">
3894 <option value="None">All Links</option>
3895 <option value="sparcle_cdd">Domains (sparcle_cdd)</option>
3896 </param>
3897 </when>
3898 <when value="geoprofiles">
3899 <param name="linkname" type="select" label="Link Name">
3900 <option value="None">All Links</option>
3901 <option value="sparcle_geoprofiles">Microarray (sparcle_geoprofiles)</option>
3902 </param>
3903 </when>
3904 <when value="gtr">
3905 <param name="linkname" type="select" label="Link Name">
3906 <option value="None">All Links</option>
3907 <option value="sparcle_gtr">Gene Tests (sparcle_gtr)</option>
3908 </param>
3909 </when>
3910 <when value="gene">
3911 <param name="linkname" type="select" label="Link Name">
3912 <option value="None">All Links</option>
3913 <option value="sparcle_gene">Genes (sparcle_gene)</option>
3914 </param>
3915 </when>
3916 <when value="homologene">
3917 <param name="linkname" type="select" label="Link Name">
3918 <option value="None">All Links</option>
3919 <option value="sparcle_homologene">Homologene (sparcle_homologene)</option>
3920 </param>
3921 </when>
3922 <when value="medgen">
3923 <param name="linkname" type="select" label="Link Name">
3924 <option value="None">All Links</option>
3925 <option value="sparcle_medgen_diseases">Genetic diseases (sparcle_medgen_diseases)</option>
3926 </param>
3927 </when>
3928 <when value="nuccore">
3929 <param name="linkname" type="select" label="Link Name">
3930 <option value="None">All Links</option>
3931 <option value="sparcle_nuccore_mrna">mRNAs (sparcle_nuccore_mrna)</option>
3932 </param>
3933 </when>
3934 <when value="omim">
3935 <param name="linkname" type="select" label="Link Name">
3936 <option value="None">All Links</option>
3937 <option value="sparcle_omim">OMIM (sparcle_omim)</option>
3938 </param>
3939 </when>
3940 <when value="protein">
3941 <param name="linkname" type="select" label="Link Name">
3942 <option value="None">All Links</option>
3943 <option value="sparcle_protein">Proteins (sparcle_protein)</option>
3944 </param>
3945 </when>
3946 <when value="proteinclusters">
3947 <param name="linkname" type="select" label="Link Name">
3948 <option value="None">All Links</option>
3949 <option value="sparcle_proteinclusters">Protein Clusters (sparcle_proteinclusters)</option>
3950 </param>
3951 </when>
3952 <when value="pcassay">
3953 <param name="linkname" type="select" label="Link Name">
3954 <option value="None">All Links</option>
3955 <option value="sparcle_pcassay_target">BioAssays (sparcle_pcassay_target)</option>
3956 </param>
3957 </when>
3958 <when value="snp">
3959 <param name="linkname" type="select" label="Link Name">
3960 <option value="None">All Links</option>
3961 <option value="sparcle_snp">SNPs (sparcle_snp)</option>
3962 </param>
3963 </when>
3964 <when value="structure">
3965 <param name="linkname" type="select" label="Link Name">
3966 <option value="None">All Links</option>
3967 <option value="sparcle_structure">3D Structures (sparcle_structure)</option>
3968 </param>
3969 </when>
3970 <when value="dbvar">
3971 <param name="linkname" type="select" label="Link Name">
3972 <option value="None">All Links</option>
3973 <option value="sparcle_dbvar">Variants (sparcle_dbvar)</option>
3974 </param>
3975 </when>
3976 </conditional>
3977 </when>
3978 <when value="structure">
3979 <conditional name="db_to">
3980 <param name="db_select_to" type="select" label="To NCBI Database">
3981 <option value="biosystems">BioSystems (biosystems)</option>
3982 <option value="cdd">Conserved Domains (cdd)</option>
3983 <option value="gene">Gene (gene)</option>
3984 <option value="nuccore">Nucleotide (nuccore)</option>
3985 <option value="omim">OMIM (omim)</option>
3986 <option value="pmc">PMC (pmc)</option>
3987 <option value="protein">Protein (protein)</option>
3988 <option value="pcassay">PubChem BioAssay (pcassay)</option>
3989 <option value="pccompound">PubChem Compound (pccompound)</option>
3990 <option value="pcsubstance">PubChem Substance (pcsubstance)</option>
3991 <option value="pubmed">PubMed (pubmed)</option>
3992 <option value="snp">SNP (snp)</option>
3993 <option value="sparcle">Sparcle (sparcle)</option>
3994 <option value="structure">Structure (structure)</option>
3995 <option value="taxonomy">Taxonomy (taxonomy)</option>
3996 </param>
3997 <when value="biosystems">
3998 <param name="linkname" type="select" label="Link Name">
3999 <option value="None">All Links</option>
4000 <option value="structure_biosystems">BioSystem Links (structure_biosystems)</option>
4001 </param>
4002 </when>
4003 <when value="cdd">
4004 <param name="linkname" type="select" label="Link Name">
4005 <option value="None">All Links</option>
4006 <option value="structure_cdd_family_2">Conserved Domain Family Links (structure_cdd_family_2)</option>
4007 <option value="structure_cdd">Conserved Domain Links (structure_cdd)</option>
4008 <option value="structure_cdd_superfamily_2">Conserved Domain Superfamily Links (structure_cdd_superfamily_2)</option>
4009 </param>
4010 </when>
4011 <when value="gene">
4012 <param name="linkname" type="select" label="Link Name">
4013 <option value="None">All Links</option>
4014 <option value="structure_gene">Gene (structure_gene)</option>
4015 </param>
4016 </when>
4017 <when value="nuccore">
4018 <param name="linkname" type="select" label="Link Name">
4019 <option value="None">All Links</option>
4020 <option value="structure_nuccore">Nucleotide Links (structure_nuccore)</option>
4021 </param>
4022 </when>
4023 <when value="omim">
4024 <param name="linkname" type="select" label="Link Name">
4025 <option value="None">All Links</option>
4026 <option value="structure_omim">OMIM Links (structure_omim)</option>
4027 </param>
4028 </when>
4029 <when value="pmc">
4030 <param name="linkname" type="select" label="Link Name">
4031 <option value="None">All Links</option>
4032 <option value="structure_pmc">PMC Links (structure_pmc)</option>
4033 </param>
4034 </when>
4035 <when value="protein">
4036 <param name="linkname" type="select" label="Link Name">
4037 <option value="None">All Links</option>
4038 <option value="structure_protein">Identical Proteins (structure_protein)</option>
4039 <option value="structure_protein_direct">Proteins (structure_protein_direct)</option>
4040 <option value="structure_protein_related_list">Related Proteins (structure_protein_related_list)</option>
4041 </param>
4042 </when>
4043 <when value="pcassay">
4044 <param name="linkname" type="select" label="Link Name">
4045 <option value="None">All Links</option>
4046 <option value="structure_pcassay">BioAssay Links (structure_pcassay)</option>
4047 </param>
4048 </when>
4049 <when value="pccompound">
4050 <param name="linkname" type="select" label="Link Name">
4051 <option value="None">All Links</option>
4052 <option value="structure_pccompound">PubChem Compound Links (structure_pccompound)</option>
4053 </param>
4054 </when>
4055 <when value="pcsubstance">
4056 <param name="linkname" type="select" label="Link Name">
4057 <option value="None">All Links</option>
4058 <option value="structure_pcsubstance">PubChem Substance Links (structure_pcsubstance)</option>
4059 </param>
4060 </when>
4061 <when value="pubmed">
4062 <param name="linkname" type="select" label="Link Name">
4063 <option value="None">All Links</option>
4064 <option value="structure_pubmed">PubMed Links (structure_pubmed)</option>
4065 </param>
4066 </when>
4067 <when value="snp">
4068 <param name="linkname" type="select" label="Link Name">
4069 <option value="None">All Links</option>
4070 <option value="structure_snp">SNP Links (structure_snp)</option>
4071 </param>
4072 </when>
4073 <when value="sparcle">
4074 <param name="linkname" type="select" label="Link Name">
4075 <option value="None">All Links</option>
4076 <option value="structure_sparcle">Functional Class (structure_sparcle)</option>
4077 </param>
4078 </when>
4079 <when value="structure">
4080 <param name="linkname" type="select" label="Link Name">
4081 <option value="None">All Links</option>
4082 <option value="structure_mmdb">Related Structures (structure_mmdb)</option>
4083 </param>
4084 </when>
4085 <when value="taxonomy">
4086 <param name="linkname" type="select" label="Link Name">
4087 <option value="None">All Links</option>
4088 <option value="structure_taxonomy">Taxonomy Links (structure_taxonomy)</option>
4089 </param>
4090 </when>
4091 </conditional>
4092 </when>
4093 <when value="taxonomy">
4094 <conditional name="db_to">
4095 <param name="db_select_to" type="select" label="To NCBI Database">
4096 <option value="assembly">Assembly (assembly)</option>
4097 <option value="bioproject">BioProject (bioproject)</option>
4098 <option value="biosample">BioSample (biosample)</option>
4099 <option value="biosystems">BioSystems (biosystems)</option>
4100 <option value="books">Books (books)</option>
4101 <option value="cdd">Conserved Domains (cdd)</option>
4102 <option value="gds">GEO DataSets (gds)</option>
4103 <option value="geoprofiles">GEO Profiles (geoprofiles)</option>
4104 <option value="gene">Gene (gene)</option>
4105 <option value="genome">Genome (genome)</option>
4106 <option value="homologene">HomoloGene (homologene)</option>
4107 <option value="mesh">MeSH (mesh)</option>
4108 <option value="nuccore">Nucleotide (nuccore)</option>
4109 <option value="pmc">PMC (pmc)</option>
4110 <option value="popset">PopSet (popset)</option>
4111 <option value="protein">Protein (protein)</option>
4112 <option value="proteinclusters">Protein Clusters (proteinclusters)</option>
4113 <option value="pcassay">PubChem BioAssay (pcassay)</option>
4114 <option value="pccompound">PubChem Compound (pccompound)</option>
4115 <option value="pcsubstance">PubChem Substance (pcsubstance)</option>
4116 <option value="pubmed">PubMed (pubmed)</option>
4117 <option value="snp">SNP (snp)</option>
4118 <option value="sra">SRA (sra)</option>
4119 <option value="structure">Structure (structure)</option>
4120 <option value="dbvar">dbVar (dbvar)</option>
4121 </param>
4122 <when value="assembly">
4123 <param name="linkname" type="select" label="Link Name">
4124 <option value="None">All Links</option>
4125 <option value="taxonomy_assembly_exp">Assembly Links (taxonomy_assembly_exp)</option>
4126 </param>
4127 </when>
4128 <when value="bioproject">
4129 <param name="linkname" type="select" label="Link Name">
4130 <option value="None">All Links</option>
4131 <option value="taxonomy_bioproject_exp">BioProject Links (taxonomy_bioproject_exp)</option>
4132 </param>
4133 </when>
4134 <when value="biosample">
4135 <param name="linkname" type="select" label="Link Name">
4136 <option value="None">All Links</option>
4137 <option value="taxonomy_biosample_exp">BioSample Links (taxonomy_biosample_exp)</option>
4138 </param>
4139 </when>
4140 <when value="biosystems">
4141 <param name="linkname" type="select" label="Link Name">
4142 <option value="None">All Links</option>
4143 <option value="taxonomy_biosystems_exp">Biosystems Links (taxonomy_biosystems_exp)</option>
4144 </param>
4145 </when>
4146 <when value="books">
4147 <param name="linkname" type="select" label="Link Name">
4148 <option value="None">All Links</option>
4149 <option value="taxonomy_books">Books Links (taxonomy_books)</option>
4150 </param>
4151 </when>
4152 <when value="cdd">
4153 <param name="linkname" type="select" label="Link Name">
4154 <option value="None">All Links</option>
4155 <option value="taxonomy_cdd_exp">Conserved Domain Links (taxonomy_cdd_exp)</option>
4156 </param>
4157 </when>
4158 <when value="gds">
4159 <param name="linkname" type="select" label="Link Name">
4160 <option value="None">All Links</option>
4161 <option value="taxonomy_gds_exp">GEO DataSet Links (taxonomy_gds_exp)</option>
4162 </param>
4163 </when>
4164 <when value="geoprofiles">
4165 <param name="linkname" type="select" label="Link Name">
4166 <option value="None">All Links</option>
4167 <option value="taxonomy_geoprofiles"> (taxonomy_geoprofiles)</option>
4168 </param>
4169 </when>
4170 <when value="gene">
4171 <param name="linkname" type="select" label="Link Name">
4172 <option value="None">All Links</option>
4173 <option value="taxonomy_gene_exp">Gene Links (taxonomy_gene_exp)</option>
4174 </param>
4175 </when>
4176 <when value="genome">
4177 <param name="linkname" type="select" label="Link Name">
4178 <option value="None">All Links</option>
4179 <option value="taxonomy_genome">Genome Links (taxonomy_genome)</option>
4180 </param>
4181 </when>
4182 <when value="homologene">
4183 <param name="linkname" type="select" label="Link Name">
4184 <option value="None">All Links</option>
4185 <option value="taxonomy_homologene_exp">HomoloGene Links (taxonomy_homologene_exp)</option>
4186 </param>
4187 </when>
4188 <when value="mesh">
4189 <param name="linkname" type="select" label="Link Name">
4190 <option value="None">All Links</option>
4191 <option value="taxonomy_mesh">MeSH Links (taxonomy_mesh)</option>
4192 </param>
4193 </when>
4194 <when value="nuccore">
4195 <param name="linkname" type="select" label="Link Name">
4196 <option value="None">All Links</option>
4197 <option value="taxonomy_nucleotide_exp">Nucleotide Links (taxonomy_nucleotide_exp)</option>
4198 </param>
4199 </when>
4200 <when value="pmc">
4201 <param name="linkname" type="select" label="Link Name">
4202 <option value="None">All Links</option>
4203 <option value="taxonomy_pmc">PMC Links (taxonomy_pmc)</option>
4204 </param>
4205 </when>
4206 <when value="popset">
4207 <param name="linkname" type="select" label="Link Name">
4208 <option value="None">All Links</option>
4209 <option value="taxonomy_popset">PopSet Links (taxonomy_popset)</option>
4210 </param>
4211 </when>
4212 <when value="protein">
4213 <param name="linkname" type="select" label="Link Name">
4214 <option value="None">All Links</option>
4215 <option value="taxonomy_protein_species2wp">Links from species level taxonomic nodes to autonomous proteins (taxonomy_protein_species2wp)</option>
4216 <option value="taxonomy_protein_exp">Protein Links (taxonomy_protein_exp)</option>
4217 </param>
4218 </when>
4219 <when value="proteinclusters">
4220 <param name="linkname" type="select" label="Link Name">
4221 <option value="None">All Links</option>
4222 <option value="taxonomy_proteinclusters_exp">Protein Clusters Links (taxonomy_proteinclusters_exp)</option>
4223 </param>
4224 </when>
4225 <when value="pcassay">
4226 <param name="linkname" type="select" label="Link Name">
4227 <option value="None">All Links</option>
4228 <option value="taxonomy_pcassay">PubChem BioAssay Links (taxonomy_pcassay)</option>
4229 </param>
4230 </when>
4231 <when value="pccompound">
4232 <param name="linkname" type="select" label="Link Name">
4233 <option value="None">All Links</option>
4234 <option value="taxonomy_pccompound">PubChem Compound Links (taxonomy_pccompound)</option>
4235 </param>
4236 </when>
4237 <when value="pcsubstance">
4238 <param name="linkname" type="select" label="Link Name">
4239 <option value="None">All Links</option>
4240 <option value="taxonomy_pcsubstance">PubChem Substance Links (taxonomy_pcsubstance)</option>
4241 </param>
4242 </when>
4243 <when value="pubmed">
4244 <param name="linkname" type="select" label="Link Name">
4245 <option value="None">All Links</option>
4246 <option value="taxonomy_pubmed">PubMed Links (taxonomy_pubmed)</option>
4247 <option value="taxonomy_pubmed_entrez">PubMed via GenBank (taxonomy_pubmed_entrez)</option>
4248 </param>
4249 </when>
4250 <when value="snp">
4251 <param name="linkname" type="select" label="Link Name">
4252 <option value="None">All Links</option>
4253 <option value="taxonomy_snp_exp">SNP Links (taxonomy_snp_exp)</option>
4254 </param>
4255 </when>
4256 <when value="sra">
4257 <param name="linkname" type="select" label="Link Name">
4258 <option value="None">All Links</option>
4259 <option value="taxonomy_sra_exp">SRA Links (taxonomy_sra_exp)</option>
4260 </param>
4261 </when>
4262 <when value="structure">
4263 <param name="linkname" type="select" label="Link Name">
4264 <option value="None">All Links</option>
4265 <option value="taxonomy_structure_exp">Structure Links (taxonomy_structure_exp)</option>
4266 </param>
4267 </when>
4268 <when value="dbvar">
4269 <param name="linkname" type="select" label="Link Name">
4270 <option value="None">All Links</option>
4271 <option value="taxonomy_dbvar_exp">dbVar Links (taxonomy_dbvar_exp)</option>
4272 </param>
4273 </when>
4274 </conditional>
4275 </when>
4276 <when value="gap">
4277 <conditional name="db_to">
4278 <param name="db_select_to" type="select" label="To NCBI Database">
4279 <option value="bioproject">BioProject (bioproject)</option>
4280 <option value="biosample">BioSample (biosample)</option>
4281 <option value="gds">GEO DataSets (gds)</option>
4282 <option value="gene">Gene (gene)</option>
4283 <option value="mesh">MeSH (mesh)</option>
4284 <option value="medgen">MedGen (medgen)</option>
4285 <option value="pmc">PMC (pmc)</option>
4286 <option value="pubmed">PubMed (pubmed)</option>
4287 <option value="snp">SNP (snp)</option>
4288 <option value="sra">SRA (sra)</option>
4289 <option value="dbvar">dbVar (dbvar)</option>
4290 </param>
4291 <when value="bioproject">
4292 <param name="linkname" type="select" label="Link Name">
4293 <option value="None">All Links</option>
4294 <option value="gap_bioproject">BioProject Links (gap_bioproject)</option>
4295 </param>
4296 </when>
4297 <when value="biosample">
4298 <param name="linkname" type="select" label="Link Name">
4299 <option value="None">All Links</option>
4300 <option value="gap_biosample_all">BioSample Links (gap_biosample_all)</option>
4301 </param>
4302 </when>
4303 <when value="gds">
4304 <param name="linkname" type="select" label="Link Name">
4305 <option value="None">All Links</option>
4306 <option value="gap_gds">GEO DataSets (gap_gds)</option>
4307 </param>
4308 </when>
4309 <when value="gene">
4310 <param name="linkname" type="select" label="Link Name">
4311 <option value="None">All Links</option>
4312 <option value="gap_gene">Gene Links (gap_gene)</option>
4313 </param>
4314 </when>
4315 <when value="mesh">
4316 <param name="linkname" type="select" label="Link Name">
4317 <option value="None">All Links</option>
4318 <option value="gap_mesh">MeSH (gap_mesh)</option>
4319 </param>
4320 </when>
4321 <when value="medgen">
4322 <param name="linkname" type="select" label="Link Name">
4323 <option value="None">All Links</option>
4324 <option value="gap_medgen">MedGen (gap_medgen)</option>
4325 </param>
4326 </when>
4327 <when value="pmc">
4328 <param name="linkname" type="select" label="Link Name">
4329 <option value="None">All Links</option>
4330 <option value="gap_pmc">PMC Links (gap_pmc)</option>
4331 </param>
4332 </when>
4333 <when value="pubmed">
4334 <param name="linkname" type="select" label="Link Name">
4335 <option value="None">All Links</option>
4336 <option value="gap_pubmed">PubMed Links (gap_pubmed)</option>
4337 </param>
4338 </when>
4339 <when value="snp">
4340 <param name="linkname" type="select" label="Link Name">
4341 <option value="None">All Links</option>
4342 <option value="gap_snp">SNP Links (gap_snp)</option>
4343 </param>
4344 </when>
4345 <when value="sra">
4346 <param name="linkname" type="select" label="Link Name">
4347 <option value="None">All Links</option>
4348 <option value="gap_sra_all">SRA Links (gap_sra_all)</option>
4349 </param>
4350 </when>
4351 <when value="dbvar">
4352 <param name="linkname" type="select" label="Link Name">
4353 <option value="None">All Links</option>
4354 <option value="gap_dbvar">dbVar (gap_dbvar)</option>
4355 </param>
4356 </when>
4357 </conditional>
4358 </when>
4359 <when value="dbvar">
4360 <conditional name="db_to">
4361 <param name="db_select_to" type="select" label="To NCBI Database">
4362 <option value="bioproject">BioProject (bioproject)</option>
4363 <option value="biosample">BioSample (biosample)</option>
4364 <option value="biosystems">BioSystems (biosystems)</option>
4365 <option value="clinvar">ClinVar (clinvar)</option>
4366 <option value="gds">GEO DataSets (gds)</option>
4367 <option value="gene">Gene (gene)</option>
4368 <option value="nuccore">Nucleotide (nuccore)</option>
4369 <option value="omim">OMIM (omim)</option>
4370 <option value="pubmed">PubMed (pubmed)</option>
4371 <option value="snp">SNP (snp)</option>
4372 <option value="sparcle">Sparcle (sparcle)</option>
4373 <option value="taxonomy">Taxonomy (taxonomy)</option>
4374 <option value="gap">dbGaP (gap)</option>
4375 </param>
4376 <when value="bioproject">
4377 <param name="linkname" type="select" label="Link Name">
4378 <option value="None">All Links</option>
4379 <option value="dbvar_bioproject">BioProjects Links (dbvar_bioproject)</option>
4380 </param>
4381 </when>
4382 <when value="biosample">
4383 <param name="linkname" type="select" label="Link Name">
4384 <option value="None">All Links</option>
4385 <option value="dbvar_biosample">BioSample Links (dbvar_biosample)</option>
4386 </param>
4387 </when>
4388 <when value="biosystems">
4389 <param name="linkname" type="select" label="Link Name">
4390 <option value="None">All Links</option>
4391 <option value="dbvar_biosystems_gene">Pathways + GO (dbvar_biosystems_gene)</option>
4392 </param>
4393 </when>
4394 <when value="clinvar">
4395 <param name="linkname" type="select" label="Link Name">
4396 <option value="None">All Links</option>
4397 <option value="dbvar_clinvar">ClinVar (dbvar_clinvar)</option>
4398 </param>
4399 </when>
4400 <when value="gds">
4401 <param name="linkname" type="select" label="Link Name">
4402 <option value="None">All Links</option>
4403 <option value="dbvar_gds">GEO DataSets Links (dbvar_gds)</option>
4404 </param>
4405 </when>
4406 <when value="gene">
4407 <param name="linkname" type="select" label="Link Name">
4408 <option value="None">All Links</option>
4409 <option value="dbvar_gene">Gene Links (dbvar_gene)</option>
4410 </param>
4411 </when>
4412 <when value="nuccore">
4413 <param name="linkname" type="select" label="Link Name">
4414 <option value="None">All Links</option>
4415 <option value="dbvar_nuccore">Nucleotide Links (dbvar_nuccore)</option>
4416 </param>
4417 </when>
4418 <when value="omim">
4419 <param name="linkname" type="select" label="Link Name">
4420 <option value="None">All Links</option>
4421 <option value="dbvar_omim">OMIM Links (dbvar_omim)</option>
4422 </param>
4423 </when>
4424 <when value="pubmed">
4425 <param name="linkname" type="select" label="Link Name">
4426 <option value="None">All Links</option>
4427 <option value="dbvar_pubmed">PubMed Links (dbvar_pubmed)</option>
4428 </param>
4429 </when>
4430 <when value="snp">
4431 <param name="linkname" type="select" label="Link Name">
4432 <option value="None">All Links</option>
4433 <option value="dbvar_snp">dbSNP Links (dbvar_snp)</option>
4434 </param>
4435 </when>
4436 <when value="sparcle">
4437 <param name="linkname" type="select" label="Link Name">
4438 <option value="None">All Links</option>
4439 <option value="dbvar_sparcle">Functional Class (dbvar_sparcle)</option>
4440 </param>
4441 </when>
4442 <when value="taxonomy">
4443 <param name="linkname" type="select" label="Link Name">
4444 <option value="None">All Links</option>
4445 <option value="dbvar_taxonomy">Taxonomy Links (dbvar_taxonomy)</option>
4446 </param>
4447 </when>
4448 <when value="gap">
4449 <param name="linkname" type="select" label="Link Name">
4450 <option value="None">All Links</option>
4451 <option value="dbvar_gap">dbGaP Links (dbvar_gap)</option>
4452 </param>
4453 </when>
4454 </conditional>
4455 </when>
4456 <when value="grasp">
4457 <conditional name="db_to">
4458 <param name="db_select_to" type="select" label="To NCBI Database">
4459 <option value="grasp">grasp (grasp)</option>
4460 </param>
4461 <when value="grasp">
4462 <param name="linkname" type="select" label="Link Name">
4463 <option value="none">All Links</option>
4464 </param>
4465 </when>
4466 </conditional>
4467 </when>
4468 <when value="annotinfo">
4469 <conditional name="db_to">
4470 <param name="db_select_to" type="select" label="To NCBI Database">
4471 <option value="none">Not applicable</option>
4472 </param>
4473 <when value="none">
4474 <param name="linkname" type="select" label="Link Name">
4475 <option value="none">Not applicable</option>
4476 </param>
4477 </when>
4478 </conditional>
4479 </when>
4480 <when value="gapplus">
4481 <conditional name="db_to">
4482 <param name="db_select_to" type="select" label="To NCBI Database">
4483 <option value="none">Not applicable</option>
4484 </param>
4485 <when value="none">
4486 <param name="linkname" type="select" label="Link Name">
4487 <option value="none">Not applicable</option>
4488 </param>
4489 </when>
4490 </conditional>
4491 </when>
4492 <when value="ncbisearch">
4493 <conditional name="db_to">
4494 <param name="db_select_to" type="select" label="To NCBI Database">
4495 <option value="none">Not applicable</option>
4496 </param>
4497 <when value="none">
4498 <param name="linkname" type="select" label="Link Name">
4499 <option value="none">Not applicable</option>
4500 </param>
4501 </when>
4502 </conditional>
4503 </when>
4504 <when value="grasp">
4505 <conditional name="db_to">
4506 <param name="db_select_to" type="select" label="To NCBI Database">
4507 <option value="none">Not applicable</option>
4508 </param>
4509 <when value="none">
4510 <param name="linkname" type="select" label="Link Name">
4511 <option value="none">Not applicable</option>
4512 </param>
4513 </when>
4514 </conditional>
4515 </when>
4516 </conditional>
4517 </xml>
4518 <token name="@LINK_TOKEN@">
4519 <![CDATA[
4520 #if $cmd.db_from_link.db_to.db_select_to == 'n/a':
4521 none
4522 #else:
4523 $cmd.db_from_link.db_to.db_select_to
4524 #end if
4525
4526 $cmd.db_from_link.db_select_from_link
4527
4528 $cmd.cmd_select
4529
4530 #if $cmd.output_format == 'json':
4531 --retmode json
4532 #elif $cmd.output_format == 'text':
4533 --retmode uilist
4534 #else:
4535 --retmode xml
4536 #end if
4537
4538 #if $cmd.db_from_link.db_to.linkname != 'None' and $cmd.cmd_select in ('neighbor', 'neighbor_history', 'neighbor_score'):
4539 --linkname $cmd.db_from_link.db_to.linkname
4540 #end if
4541 ]]>
4542 </token>
847 </macros> 4543 </macros>