Mercurial > repos > iuc > ncbi_eutils_esummary
view esummary.xml @ 1:c8d4ea6376a7 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/ncbi_entrez_eutils commit a4b0969b33a68a0ea9ba12291f6694aec24f13ed
author | iuc |
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date | Tue, 30 Oct 2018 19:09:40 -0400 |
parents | 92bd8a680b9d |
children | cb5a0fe9e036 |
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<?xml version="1.0"?> <tool id="ncbi_eutils_esummary" name="NCBI ESummary" version="@WRAPPER_VERSION@"> <description>fetch summary of history/ids</description> <macros> <import>macros.xml</import> </macros> <expand macro="requirements"/> <version_command>python esummary.py --version</version_command> <command detect_errors="aggressive" interpreter="python"><![CDATA[esummary.py $db_select @LIST_OR_HIST@ @EMAIL_ARGUMENTS@ > $default]]></command> <inputs> <expand macro="dbselect"/> <expand macro="list_or_hist"/> </inputs> <outputs> <data format="xml" name="default" label="Summary of NCBI Search"/> </outputs> <tests> <test> <param name="qss" value="id_list"/> <param name="id_list" value="10239"/> <param name="db_select" value="taxonomy"/> <output name="default" file="esummary.tax.xml" ftype="xml"/> </test> </tests> <help><![CDATA[ NCBI Entrez ESummary ==================== Responds to a list of UIDs from a given database with the corresponding document summaries. Example Queries --------------- Search against protein: +----------------------+--------------------------------------+ | Parameter | Value | +======================+======================================+ | NCBI Database to Use | Protein | +----------------------+--------------------------------------+ | ID List | 28800982 28628843 | +----------------------+--------------------------------------+ @REFERENCES@ @DISCLAIMER@ ]]></help> <expand macro="citations"/> </tool>